Wall clock time and date at job start Mon Mar 30 2020 05:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.97059 * 2 1 4 4 S 1.83305 * 111.10067 * 124.17700 * 2 1 3 5 5 C 1.77439 * 96.60407 * 93.12078 * 4 2 1 6 6 C 1.38820 * 108.29595 * 15.17956 * 5 4 2 7 7 C 1.39631 * 117.81556 * 180.73769 * 6 5 4 8 8 C 1.37706 * 121.09551 * 359.68951 * 7 6 5 9 9 C 1.38306 * 120.55506 * 0.02562 * 8 7 6 10 10 C 1.38224 * 119.26352 * 0.14921 * 9 8 7 11 11 F 1.35103 * 119.93516 * 179.97438 * 10 9 8 12 12 C 1.50880 * 115.37363 * 0.75725 * 6 5 4 13 13 H 1.09006 * 109.28074 * 219.08003 * 12 6 5 14 14 C 1.50707 * 109.21658 * 99.60071 * 12 6 5 15 15 H 1.07996 * 119.99871 * 239.02301 * 14 12 6 16 16 C 1.37871 * 119.99877 * 59.01449 * 14 12 6 17 17 N 1.31514 * 120.00245 * 359.97438 * 16 14 12 18 18 Si 1.86806 * 120.00005 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.46672 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47012 * 119.99879 * 18 16 14 21 21 H 1.48498 * 109.46863 * 239.99828 * 18 16 14 22 22 H 1.09002 * 109.47153 * 184.13411 * 1 2 3 23 23 H 1.09001 * 109.46832 * 64.13601 * 1 2 3 24 24 H 1.09004 * 109.47261 * 304.13583 * 1 2 3 25 25 H 1.07997 * 119.45268 * 179.70275 * 7 6 5 26 26 H 1.08000 * 119.72493 * 180.02562 * 8 7 6 27 27 H 1.08000 * 120.37087 * 180.13247 * 9 8 7 28 28 H 0.96996 * 119.99956 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9201 1.0178 0.0000 4 16 2.1899 -0.9607 1.4148 5 6 2.3529 -2.5043 0.5551 6 6 2.2669 -2.2552 -0.8079 7 6 2.3556 -3.3450 -1.6763 8 6 2.5291 -4.6241 -1.1968 9 6 2.6194 -4.8590 0.1631 10 6 2.5304 -3.7943 1.0401 11 9 2.6163 -4.0083 2.3713 12 6 2.0850 -0.8070 -1.1903 13 1 1.3887 -0.7402 -2.0263 14 6 3.4153 -0.2323 -1.6040 15 1 3.8241 0.6170 -1.0768 16 6 4.1105 -0.7909 -2.6554 17 7 3.6131 -1.8256 -3.2970 18 14 5.7599 -0.0790 -3.1679 19 1 6.0950 1.0731 -2.2929 20 1 6.8101 -1.1209 -3.0393 21 1 5.6851 0.3770 -4.5791 22 1 -0.3633 -1.0250 0.0741 23 1 -0.3633 0.4483 -0.9247 24 1 -0.3634 0.5767 0.8506 25 1 2.2871 -3.1820 -2.7417 26 1 2.5953 -5.4509 -1.8885 27 1 2.7576 -5.8632 0.5358 28 1 4.1024 -2.2188 -4.0364 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260493174.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:06 Heat of formation + Delta-G solvation = -23.958980 kcal Electronic energy + Delta-G solvation = -14834.874276 eV Core-core repulsion = 12277.092278 eV Total energy + Delta-G solvation = -2557.781999 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.052 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.13510 -38.38786 -35.03989 -32.40217 -30.19032 -29.22768 -27.30644 -23.78151 -22.35995 -21.48718 -19.94417 -17.30986 -16.66678 -15.58125 -15.42974 -14.91239 -14.75867 -14.24167 -13.57516 -13.52828 -12.95022 -12.36892 -12.17881 -12.05193 -11.71280 -11.46421 -11.06338 -10.87159 -10.65078 -10.62193 -10.39116 -9.82504 -9.56395 -9.20991 -8.88785 -8.64139 -7.61198 -6.57747 -6.17510 -4.35986 1.99788 2.14378 2.45312 3.09044 3.18548 3.26962 3.31013 4.23761 4.52509 4.99808 5.07705 5.51344 5.53599 5.64640 5.78836 5.96289 6.10212 6.23601 6.33476 6.37289 6.55725 6.67970 6.87923 7.02884 7.19502 7.34026 7.58932 7.69905 7.91531 7.95360 8.65472 9.30090 10.74996 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.022088 B = 0.011936 C = 0.009555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.339748 B = 2345.373124 C = 2929.590317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.043 4.043 3 H 0.111 0.889 4 S -0.172 6.172 5 C -0.132 4.132 6 C -0.011 4.011 7 C -0.067 4.067 8 C -0.121 4.121 9 C -0.167 4.167 10 C 0.098 3.902 11 F -0.151 7.151 12 C 0.071 3.929 13 H 0.055 0.945 14 C -0.501 4.501 15 H 0.068 0.932 16 C 0.063 3.937 17 N -0.880 5.880 18 Si 0.902 3.098 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.282 1.282 22 H 0.056 0.944 23 H 0.065 0.935 24 H 0.054 0.946 25 H 0.165 0.835 26 H 0.118 0.882 27 H 0.123 0.877 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.057 -1.681 2.452 5.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.171 4.171 3 H 0.129 0.871 4 S 0.070 5.930 5 C -0.245 4.245 6 C -0.017 4.017 7 C -0.088 4.088 8 C -0.141 4.141 9 C -0.187 4.187 10 C 0.073 3.927 11 F -0.130 7.130 12 C 0.052 3.948 13 H 0.073 0.927 14 C -0.538 4.538 15 H 0.087 0.913 16 C -0.139 4.139 17 N -0.518 5.518 18 Si 0.729 3.271 19 H -0.195 1.195 20 H -0.208 1.208 21 H -0.208 1.208 22 H 0.075 0.925 23 H 0.083 0.917 24 H 0.073 0.927 25 H 0.182 0.818 26 H 0.136 0.864 27 H 0.141 0.859 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.758 -1.311 3.587 5.358 hybrid contribution 1.021 -0.340 -1.221 1.628 sum -2.737 -1.651 2.366 3.976 Atomic orbital electron populations 1.21958 0.93826 1.02121 1.01495 1.24209 0.97049 1.01431 0.94412 0.87149 1.85388 1.82514 1.04351 1.20728 1.21967 1.10350 0.94329 0.97872 1.21290 0.93877 0.97013 0.89499 1.21820 0.94804 0.89355 1.02844 1.20835 1.01987 0.97574 0.93744 1.20749 1.07253 0.96957 0.93748 1.16727 1.07249 0.91913 0.76800 1.91405 1.94276 1.95588 1.31717 1.18412 0.98058 0.85772 0.92531 0.92689 1.21117 1.03688 1.14346 1.14618 0.91341 1.24988 0.98335 0.94589 0.95990 1.69725 1.38638 1.21853 1.21571 0.86352 0.83113 0.79232 0.78377 1.19529 1.20827 1.20756 0.92473 0.91654 0.92697 0.81795 0.86390 0.85878 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 9.30 37.16 0.35 -1.88 15 2 C -0.04 -0.85 3.50 -26.14 -0.09 -0.94 15 3 H 0.11 2.14 7.70 -51.93 -0.40 1.74 15 4 S -0.17 -3.68 22.53 -107.50 -2.42 -6.11 15 5 C -0.13 -3.03 6.46 -39.10 -0.25 -3.29 15 6 C -0.01 -0.26 4.94 -103.80 -0.51 -0.78 15 7 C -0.07 -1.50 8.32 -39.26 -0.33 -1.83 15 8 C -0.12 -2.35 9.99 -39.75 -0.40 -2.74 15 9 C -0.17 -3.20 10.06 -39.56 -0.40 -3.60 15 10 C 0.10 2.12 7.31 -39.32 -0.29 1.83 15 11 F -0.15 -3.18 17.27 2.25 0.04 -3.14 15 12 C 0.07 1.66 2.10 -92.24 -0.19 1.46 15 13 H 0.06 1.32 7.92 -51.93 -0.41 0.91 15 14 C -0.50 -12.73 8.45 -34.44 -0.29 -13.02 15 15 H 0.07 1.75 7.53 -52.49 -0.40 1.35 15 16 C 0.06 1.61 5.29 -17.82 -0.09 1.51 15 17 N -0.88 -22.32 9.05 55.43 0.50 -21.82 15 18 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 15 19 H -0.27 -6.10 7.11 56.52 0.40 -5.69 15 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 21 H -0.28 -6.24 7.11 56.52 0.40 -5.83 15 22 H 0.06 0.97 8.14 -51.93 -0.42 0.55 15 23 H 0.06 0.98 8.14 -51.93 -0.42 0.56 15 24 H 0.05 0.79 8.14 -51.93 -0.42 0.37 15 25 H 0.17 3.79 5.85 -52.49 -0.31 3.48 15 26 H 0.12 1.91 8.06 -52.49 -0.42 1.49 15 27 H 0.12 1.97 8.06 -52.49 -0.42 1.55 15 28 H 0.26 6.43 8.31 -40.82 -0.34 6.09 15 LS Contribution 253.27 15.07 3.82 3.82 Total: -1.00 -26.40 253.27 -8.35 -34.75 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -2.76 Total: 0.50 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: -2.50 Total: -23.27 kcal Atomic # 7 Polarization: -22.32 SS G_CDS: 0.50 Total: -21.82 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.04 Total: -3.14 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: -3.68 SS G_CDS: -2.42 Total: -6.11 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -26.40 -8.35 -34.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260493174.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.791 kcal (2) G-P(sol) polarization free energy of solvation -26.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds