Wall clock time and date at job start Mon Mar 30 2020 05:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.97059 * 2 1 4 4 S 1.83305 * 111.10067 * 124.17700 * 2 1 3 5 5 C 1.77439 * 96.60407 * 93.12078 * 4 2 1 6 6 C 1.38820 * 108.29595 * 15.17956 * 5 4 2 7 7 C 1.39631 * 117.81556 * 180.73769 * 6 5 4 8 8 C 1.37706 * 121.09551 * 359.68951 * 7 6 5 9 9 C 1.38306 * 120.55506 * 0.02562 * 8 7 6 10 10 C 1.38224 * 119.26352 * 0.14921 * 9 8 7 11 11 F 1.35103 * 119.93516 * 179.97438 * 10 9 8 12 12 C 1.50880 * 115.37363 * 0.75725 * 6 5 4 13 13 H 1.09006 * 109.28074 * 219.08003 * 12 6 5 14 14 C 1.50707 * 109.21658 * 99.60071 * 12 6 5 15 15 H 1.07996 * 119.99871 * 239.02301 * 14 12 6 16 16 C 1.37871 * 119.99877 * 59.01449 * 14 12 6 17 17 N 1.31514 * 120.00245 * 359.97438 * 16 14 12 18 18 Si 1.86806 * 120.00005 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.46672 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47012 * 119.99879 * 18 16 14 21 21 H 1.48498 * 109.46863 * 239.99828 * 18 16 14 22 22 H 1.09002 * 109.47153 * 184.13411 * 1 2 3 23 23 H 1.09001 * 109.46832 * 64.13601 * 1 2 3 24 24 H 1.09004 * 109.47261 * 304.13583 * 1 2 3 25 25 H 1.07997 * 119.45268 * 179.70275 * 7 6 5 26 26 H 1.08000 * 119.72493 * 180.02562 * 8 7 6 27 27 H 1.08000 * 120.37087 * 180.13247 * 9 8 7 28 28 H 0.96996 * 119.99956 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9201 1.0178 0.0000 4 16 2.1899 -0.9607 1.4148 5 6 2.3529 -2.5043 0.5551 6 6 2.2669 -2.2552 -0.8079 7 6 2.3556 -3.3450 -1.6763 8 6 2.5291 -4.6241 -1.1968 9 6 2.6194 -4.8590 0.1631 10 6 2.5304 -3.7943 1.0401 11 9 2.6163 -4.0083 2.3713 12 6 2.0850 -0.8070 -1.1903 13 1 1.3887 -0.7402 -2.0263 14 6 3.4153 -0.2323 -1.6040 15 1 3.8241 0.6170 -1.0768 16 6 4.1105 -0.7909 -2.6554 17 7 3.6131 -1.8256 -3.2970 18 14 5.7599 -0.0790 -3.1679 19 1 6.0950 1.0731 -2.2929 20 1 6.8101 -1.1209 -3.0393 21 1 5.6851 0.3770 -4.5791 22 1 -0.3633 -1.0250 0.0741 23 1 -0.3633 0.4483 -0.9247 24 1 -0.3634 0.5767 0.8506 25 1 2.2871 -3.1820 -2.7417 26 1 2.5953 -5.4509 -1.8885 27 1 2.7576 -5.8632 0.5358 28 1 4.1024 -2.2188 -4.0364 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260493174.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:06 Heat of formation + Delta-G solvation = -35.763292 kcal Electronic energy + Delta-G solvation = -14835.386150 eV Core-core repulsion = 12277.092278 eV Total energy + Delta-G solvation = -2558.293872 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.78220 -40.04610 -36.70235 -34.22180 -31.75810 -30.88033 -29.03973 -25.52797 -23.98193 -23.10781 -21.61895 -19.02232 -18.47876 -17.25685 -17.06594 -16.62797 -16.50898 -15.82135 -15.19012 -15.15998 -14.63008 -14.03135 -13.73970 -13.67960 -13.28313 -13.12777 -12.83227 -12.60292 -12.37897 -12.18537 -12.04952 -11.55779 -11.32978 -10.88705 -10.66675 -10.42507 -9.30870 -8.26770 -8.04688 -6.31817 0.34433 0.49893 0.81162 1.38307 1.42881 1.44899 1.52006 2.38101 2.86608 3.10204 3.40965 3.94622 4.01379 4.16433 4.26955 4.40534 4.61340 4.68476 4.87671 4.93772 5.05661 5.17905 5.27119 5.32827 5.43599 5.61039 5.81311 5.94942 6.09178 6.23115 6.72417 7.35406 8.83227 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.022088 B = 0.011936 C = 0.009555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.339748 B = 2345.373124 C = 2929.590317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.036 4.036 3 H 0.113 0.887 4 S -0.185 6.185 5 C -0.153 4.153 6 C -0.035 4.035 7 C -0.084 4.084 8 C -0.112 4.112 9 C -0.153 4.153 10 C 0.082 3.918 11 F -0.151 7.151 12 C 0.070 3.930 13 H 0.038 0.962 14 C -0.521 4.521 15 H 0.058 0.942 16 C 0.025 3.975 17 N -0.890 5.890 18 Si 0.952 3.048 19 H -0.273 1.273 20 H -0.287 1.287 21 H -0.274 1.274 22 H 0.048 0.952 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.152 0.848 26 H 0.155 0.845 27 H 0.162 0.838 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.081 -2.526 2.527 5.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.164 4.164 3 H 0.131 0.869 4 S 0.056 5.944 5 C -0.266 4.266 6 C -0.040 4.040 7 C -0.105 4.105 8 C -0.132 4.132 9 C -0.173 4.173 10 C 0.057 3.943 11 F -0.129 7.129 12 C 0.051 3.949 13 H 0.056 0.944 14 C -0.558 4.558 15 H 0.076 0.924 16 C -0.176 4.176 17 N -0.528 5.528 18 Si 0.778 3.222 19 H -0.198 1.198 20 H -0.213 1.213 21 H -0.199 1.199 22 H 0.067 0.933 23 H 0.098 0.902 24 H 0.096 0.904 25 H 0.169 0.831 26 H 0.172 0.828 27 H 0.180 0.820 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.794 -2.155 3.660 5.695 hybrid contribution 1.017 -0.129 -1.250 1.617 sum -2.777 -2.284 2.410 4.328 Atomic orbital electron populations 1.21901 0.91077 1.02238 1.03317 1.24259 0.99227 1.00641 0.92301 0.86910 1.85282 1.83052 1.04520 1.21505 1.22193 1.11185 0.95263 0.97931 1.21345 0.95306 0.97282 0.90104 1.21870 0.95830 0.90571 1.02232 1.21197 0.99996 0.97393 0.94624 1.21172 1.04844 0.98045 0.93192 1.17053 1.07777 0.92211 0.77260 1.91401 1.94313 1.95533 1.31692 1.18363 0.96806 0.86568 0.93150 0.94368 1.21310 1.04924 1.14536 1.15059 0.92367 1.25584 1.00716 0.95076 0.96210 1.69843 1.39217 1.22100 1.21591 0.85583 0.80018 0.78324 0.78239 1.19779 1.21273 1.19945 0.93261 0.90174 0.90353 0.83054 0.82755 0.82031 0.92380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.02 9.30 71.98 0.67 -3.35 15 2 C -0.04 -1.43 3.50 30.98 0.11 -1.33 15 3 H 0.11 4.36 7.70 -2.39 -0.02 4.34 15 4 S -0.18 -7.90 22.53 -56.49 -1.27 -9.18 15 5 C -0.15 -6.95 6.46 22.58 0.15 -6.80 15 6 C -0.03 -1.64 4.94 -19.33 -0.10 -1.73 15 7 C -0.08 -3.69 8.32 22.48 0.19 -3.51 15 8 C -0.11 -4.06 9.99 22.16 0.22 -3.84 15 9 C -0.15 -5.39 10.06 22.28 0.22 -5.17 15 10 C 0.08 3.41 7.31 22.44 0.16 3.57 15 11 F -0.15 -6.11 17.27 44.97 0.78 -5.34 15 12 C 0.07 3.30 2.10 -11.84 -0.02 3.27 15 13 H 0.04 1.88 7.92 -2.38 -0.02 1.86 15 14 C -0.52 -26.81 8.45 25.60 0.22 -26.60 15 15 H 0.06 3.03 7.53 -2.91 -0.02 3.00 15 16 C 0.02 1.27 5.29 84.65 0.45 1.72 15 17 N -0.89 -45.17 9.05 21.45 0.19 -44.98 15 18 Si 0.95 41.58 29.54 68.60 2.03 43.60 15 19 H -0.27 -11.91 7.11 99.48 0.71 -11.21 15 20 H -0.29 -12.63 7.11 99.48 0.71 -11.92 15 21 H -0.27 -11.54 7.11 99.48 0.71 -10.83 15 22 H 0.05 1.64 8.14 -2.39 -0.02 1.62 15 23 H 0.08 2.31 8.14 -2.39 -0.02 2.29 15 24 H 0.08 2.11 8.14 -2.38 -0.02 2.09 15 25 H 0.15 7.00 5.85 -2.91 -0.02 6.99 15 26 H 0.15 4.40 8.06 -2.91 -0.02 4.38 15 27 H 0.16 4.43 8.06 -2.91 -0.02 4.41 15 28 H 0.27 12.86 8.31 -92.71 -0.77 12.09 15 Total: -1.00 -55.69 253.27 5.16 -50.54 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: 1.17 Total: 9.11 kcal Atomic # 6 Polarization: -46.02 SS G_CDS: 2.26 Total: -43.76 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: 0.19 Total: -44.98 kcal Atomic # 9 Polarization: -6.11 SS G_CDS: 0.78 Total: -5.34 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.60 kcal Atomic # 16 Polarization: -7.90 SS G_CDS: -1.27 Total: -9.18 kcal Total: -55.69 5.16 -50.54 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260493174.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.773 kcal (2) G-P(sol) polarization free energy of solvation -55.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds