Wall clock time and date at job start Mon Mar 30 2020 05:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 111.00637 * 2 1 4 4 S 1.83206 * 111.04164 * 235.87244 * 2 1 3 5 5 C 1.77435 * 96.56376 * 217.09691 * 4 2 1 6 6 C 1.38823 * 108.28826 * 15.46562 * 5 4 2 7 7 C 1.39645 * 117.80263 * 180.35658 * 6 5 4 8 8 C 1.37699 * 121.10130 * 359.82825 * 7 6 5 9 9 C 1.38302 * 120.55832 * 359.97438 * 8 7 6 10 10 C 1.38226 * 119.26229 * 0.10622 * 9 8 7 11 11 F 1.35103 * 119.93901 * 179.97438 * 10 9 8 12 12 C 1.50869 * 115.38936 * 0.38157 * 6 5 4 13 13 H 1.09006 * 109.27361 * 99.93004 * 12 6 5 14 14 C 1.50701 * 109.27047 * 219.42992 * 12 6 5 15 15 H 1.07996 * 120.00289 * 65.48539 * 14 12 6 16 16 C 1.37887 * 120.00177 * 245.21378 * 14 12 6 17 17 N 1.31516 * 119.99496 * 354.23940 * 16 14 12 18 18 Si 1.86796 * 120.00077 * 174.24088 * 16 14 12 19 19 H 1.48491 * 109.47323 * 89.99803 * 18 16 14 20 20 H 1.48502 * 109.46988 * 210.00023 * 18 16 14 21 21 H 1.48505 * 109.47055 * 329.99484 * 18 16 14 22 22 H 1.09003 * 109.46833 * 295.84339 * 1 2 3 23 23 H 1.09001 * 109.46827 * 55.84106 * 1 2 3 24 24 H 1.08999 * 109.47325 * 175.84422 * 1 2 3 25 25 H 1.07993 * 119.44635 * 179.80545 * 7 6 5 26 26 H 1.08002 * 119.72383 * 179.97438 * 8 7 6 27 27 H 1.08006 * 120.37451 * 180.12873 * 9 8 7 28 28 H 0.96999 * 119.99661 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9207 1.0175 0.0000 4 16 2.1878 -0.9593 -1.4154 5 6 3.5728 -1.6624 -0.5578 6 6 3.3699 -1.4981 0.8057 7 6 4.3535 -1.9781 1.6730 8 6 5.4856 -2.5971 1.1920 9 6 5.6744 -2.7586 -0.1686 10 6 4.7136 -2.2891 -1.0445 11 9 4.8843 -2.4392 -2.3762 12 6 2.0848 -0.8075 1.1899 13 1 1.3508 -1.5549 1.4910 14 6 2.3472 0.1249 2.3444 15 1 2.9891 0.9830 2.2105 16 6 1.7632 -0.1144 3.5704 17 7 0.8896 -1.0885 3.7036 18 14 2.2128 0.9448 5.0418 19 1 1.2960 2.1108 5.1111 20 1 2.0885 0.1428 6.2855 21 1 3.6116 1.4227 4.8988 22 1 -0.3633 0.4480 0.9249 23 1 -0.3633 0.5770 -0.8504 24 1 -0.3634 -1.0249 -0.0745 25 1 4.2243 -1.8615 2.7389 26 1 6.2323 -2.9596 1.8829 27 1 6.5624 -3.2464 -0.5426 28 1 0.4785 -1.2566 4.5659 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260493193.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:13 Heat of formation + Delta-G solvation = -44.037062 kcal Electronic energy + Delta-G solvation = -14561.800983 eV Core-core repulsion = 12003.148333 eV Total energy + Delta-G solvation = -2558.652650 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.052 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.87714 -40.12248 -36.78830 -34.05558 -32.13289 -31.22013 -28.66934 -25.96371 -24.03245 -22.93097 -21.68849 -19.10798 -18.39522 -17.51675 -17.10998 -16.64051 -16.49753 -16.09050 -15.34285 -15.25602 -14.63445 -14.15949 -14.05046 -13.28781 -13.17483 -13.08554 -12.92265 -12.79791 -12.36854 -12.25607 -11.92206 -11.68984 -11.55799 -10.94794 -10.72293 -10.44709 -9.50346 -8.40344 -8.18809 -6.31800 0.16328 0.28837 0.71241 1.33825 1.43402 1.46681 1.55138 2.39129 2.66551 3.06905 3.30596 3.78452 3.97847 4.17223 4.23268 4.29895 4.42807 4.62683 4.82287 4.93997 5.03173 5.12242 5.18978 5.28216 5.38953 5.47320 5.65493 5.68090 5.96464 6.15216 6.79996 7.34679 8.86707 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.026518 B = 0.010021 C = 0.007749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.651892 B = 2793.477564 C = 3612.648788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.026 4.026 3 H 0.089 0.911 4 S -0.197 6.197 5 C -0.157 4.157 6 C -0.051 4.051 7 C -0.110 4.110 8 C -0.085 4.085 9 C -0.146 4.146 10 C 0.102 3.898 11 F -0.145 7.145 12 C 0.053 3.947 13 H 0.072 0.928 14 C -0.517 4.517 15 H 0.052 0.948 16 C 0.034 3.966 17 N -0.913 5.913 18 Si 0.952 3.048 19 H -0.275 1.275 20 H -0.282 1.282 21 H -0.268 1.268 22 H 0.068 0.932 23 H 0.073 0.927 24 H 0.055 0.945 25 H 0.120 0.880 26 H 0.170 0.830 27 H 0.174 0.826 28 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.802 -1.426 -3.818 7.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.154 4.154 3 H 0.107 0.893 4 S 0.045 5.955 5 C -0.270 4.270 6 C -0.056 4.056 7 C -0.130 4.130 8 C -0.105 4.105 9 C -0.165 4.165 10 C 0.077 3.923 11 F -0.124 7.124 12 C 0.034 3.966 13 H 0.090 0.910 14 C -0.555 4.555 15 H 0.070 0.930 16 C -0.168 4.168 17 N -0.551 5.551 18 Si 0.777 3.223 19 H -0.201 1.201 20 H -0.207 1.207 21 H -0.192 1.192 22 H 0.087 0.913 23 H 0.092 0.908 24 H 0.074 0.926 25 H 0.138 0.862 26 H 0.188 0.812 27 H 0.191 0.809 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.159 -1.572 -5.000 7.354 hybrid contribution 0.352 0.579 1.758 1.884 sum 5.512 -0.993 -3.242 6.471 Atomic orbital electron populations 1.21476 0.90746 1.02301 1.02352 1.24388 1.00057 1.00015 0.90973 0.89257 1.85446 1.28191 1.58750 1.23080 1.22276 0.98643 1.08393 0.97694 1.21759 0.97910 0.95264 0.90698 1.21132 0.93400 0.98282 1.00197 1.21199 0.97084 0.97127 0.95082 1.21295 0.99425 1.02962 0.92848 1.17158 0.94665 1.02950 0.77513 1.91438 1.95481 1.94027 1.31414 1.18560 0.90215 0.95033 0.92825 0.90997 1.20986 1.29585 1.10336 0.94631 0.92953 1.25623 0.93856 0.96103 1.01189 1.69974 1.27679 1.31844 1.25602 0.85644 0.79020 0.78790 0.78823 1.20061 1.20719 1.19210 0.91339 0.90820 0.92617 0.86205 0.81242 0.80870 0.92302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.15 9.26 71.98 0.67 -3.49 15 2 C -0.03 -1.11 3.46 30.98 0.11 -1.00 15 3 H 0.09 3.80 7.92 -2.39 -0.02 3.78 15 4 S -0.20 -8.15 22.55 -56.49 -1.27 -9.43 15 5 C -0.16 -6.66 6.45 22.58 0.15 -6.51 15 6 C -0.05 -2.30 5.55 -19.33 -0.11 -2.40 15 7 C -0.11 -4.34 9.46 22.48 0.21 -4.13 15 8 C -0.09 -2.56 9.99 22.16 0.22 -2.34 15 9 C -0.15 -4.30 10.06 22.28 0.22 -4.08 15 10 C 0.10 3.78 7.31 22.44 0.16 3.95 15 11 F -0.14 -5.27 17.27 44.97 0.78 -4.50 15 12 C 0.05 2.55 2.46 -11.85 -0.03 2.52 15 13 H 0.07 3.90 6.62 -2.38 -0.02 3.89 15 14 C -0.52 -26.08 7.53 25.60 0.19 -25.88 15 15 H 0.05 2.67 7.82 -2.91 -0.02 2.65 15 16 C 0.03 1.70 5.45 84.66 0.46 2.16 15 17 N -0.91 -48.75 12.61 21.45 0.27 -48.48 15 18 Si 0.95 40.11 29.54 68.60 2.03 42.14 15 19 H -0.28 -11.41 7.11 99.48 0.71 -10.70 15 20 H -0.28 -11.71 7.11 99.48 0.71 -11.00 15 21 H -0.27 -11.04 7.11 99.48 0.71 -10.33 15 22 H 0.07 2.74 8.14 -2.39 -0.02 2.72 15 23 H 0.07 2.33 8.14 -2.39 -0.02 2.31 15 24 H 0.05 2.12 8.14 -2.39 -0.02 2.10 15 25 H 0.12 4.94 7.85 -2.91 -0.02 4.91 15 26 H 0.17 3.60 8.06 -2.91 -0.02 3.58 15 27 H 0.17 3.66 8.06 -2.91 -0.02 3.64 15 28 H 0.27 13.59 8.31 -92.71 -0.77 12.82 15 Total: -1.00 -56.34 259.34 5.22 -51.11 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 1.16 Total: 10.36 kcal Atomic # 6 Polarization: -43.46 SS G_CDS: 2.26 Total: -41.20 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: 0.27 Total: -48.48 kcal Atomic # 9 Polarization: -5.27 SS G_CDS: 0.78 Total: -4.50 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.14 kcal Atomic # 16 Polarization: -8.15 SS G_CDS: -1.27 Total: -9.43 kcal Total: -56.34 5.22 -51.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260493193.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.075 kcal (2) G-P(sol) polarization free energy of solvation -56.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds