Wall clock time and date at job start Mon Mar 30 2020 06:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38207 * 120.08752 * 2 1 4 4 F 1.35099 * 119.94968 * 359.94784 * 3 2 1 5 5 C 1.38559 * 120.09576 * 179.97438 * 3 2 1 6 6 C 1.38352 * 120.27885 * 0.02562 * 5 3 2 7 7 C 1.50701 * 119.90741 * 180.02562 * 6 5 3 8 8 C 1.50701 * 109.46765 * 90.00283 * 7 6 5 9 9 H 1.07995 * 120.00116 * 0.02562 * 8 7 6 10 10 C 1.37876 * 119.99912 * 179.97438 * 8 7 6 11 11 N 1.31518 * 120.00018 * 0.02562 * 10 8 7 12 12 Si 1.86793 * 120.00343 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47126 * 90.00245 * 12 10 8 14 14 H 1.48497 * 109.47311 * 210.00534 * 12 10 8 15 15 H 1.48506 * 109.47073 * 330.00354 * 12 10 8 16 16 C 1.37931 * 120.17845 * 359.97438 * 6 5 3 17 17 C 1.39580 * 120.09327 * 179.71439 * 2 1 3 18 18 C 1.47733 * 120.13506 * 0.02562 * 17 2 1 19 19 O 1.21464 * 120.00210 * 6.01822 * 18 17 2 20 20 O 1.34718 * 119.99847 * 186.01373 * 18 17 2 21 21 H 1.09004 * 109.46578 * 96.54896 * 1 2 3 22 22 H 1.09000 * 109.46750 * 216.54341 * 1 2 3 23 23 H 1.08988 * 109.47268 * 336.55016 * 1 2 3 24 24 H 1.07998 * 119.85575 * 179.97438 * 5 3 2 25 25 H 1.08996 * 109.46905 * 210.00104 * 7 6 5 26 26 H 1.08994 * 109.47108 * 330.00363 * 7 6 5 27 27 H 0.96996 * 120.00017 * 179.97438 * 11 10 8 28 28 H 1.08002 * 120.04768 * 180.02562 * 16 6 5 29 29 H 0.96696 * 116.99841 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1999 1.1958 0.0000 4 9 1.5252 2.3663 -0.0011 5 6 3.5855 1.1960 0.0005 6 6 4.2832 0.0014 0.0005 7 6 5.7902 0.0114 0.0017 8 6 6.2913 0.0140 1.4229 9 1 5.5889 0.0085 2.2432 10 6 7.6467 0.0223 1.6760 11 7 8.5021 0.0285 0.6771 12 14 8.2680 0.0248 3.4376 13 1 8.4415 -1.3746 3.9033 14 1 9.5716 0.7331 3.5017 15 1 7.2847 0.7180 4.3083 16 6 3.6033 -1.1987 0.0005 17 6 2.2069 -1.2076 0.0060 18 6 1.4733 -2.4900 0.0118 19 8 0.2638 -2.4983 -0.0989 20 8 2.1460 -3.6502 0.1399 21 1 -0.3632 -0.1172 -1.0210 22 1 -0.3633 -0.8256 0.6119 23 1 -0.3633 0.9427 0.4089 24 1 4.1230 2.1328 0.0001 25 1 6.1598 -0.8759 -0.5122 26 1 6.1480 0.9039 -0.5114 27 1 9.4556 0.0347 0.8551 28 1 4.1501 -2.1301 0.0010 29 1 1.6229 -4.4634 0.1378 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260493546.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:58 Heat of formation + Delta-G solvation = -126.166977 kcal Electronic energy + Delta-G solvation = -16270.390082 eV Core-core repulsion = 13265.423141 eV Total energy + Delta-G solvation = -3004.966941 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.61008 -40.37107 -38.39899 -36.12861 -33.93494 -32.25351 -30.67544 -28.99505 -25.89608 -24.25894 -22.87124 -21.77547 -20.05778 -18.06227 -16.98274 -16.41804 -16.12296 -15.70721 -15.46254 -15.31030 -15.18559 -14.56598 -13.30125 -13.10294 -13.01676 -12.61461 -12.50688 -12.37063 -11.58101 -11.55396 -11.43761 -11.26907 -11.10529 -10.68524 -10.66957 -10.13945 -9.69921 -9.58395 -8.60477 -8.52536 -8.02525 -6.15158 -4.20164 0.88842 1.56581 2.69377 3.07791 3.25263 3.32072 3.35792 3.97333 4.37441 4.60093 4.98299 5.02457 5.20559 5.29528 5.39459 5.74516 5.84031 5.88341 6.02154 6.19288 6.35613 6.50418 6.57492 6.69201 6.76864 7.19797 7.38954 7.56046 7.79747 7.97825 8.15245 8.84470 9.44865 10.94672 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.025164 B = 0.006967 C = 0.005981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.430147 B = 4018.035213 C = 4680.196202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.082 4.082 3 C 0.079 3.921 4 F -0.141 7.141 5 C -0.112 4.112 6 C -0.027 4.027 7 C 0.048 3.952 8 C -0.519 4.519 9 H 0.059 0.941 10 C 0.061 3.939 11 N -0.891 5.891 12 Si 0.897 3.103 13 H -0.279 1.279 14 H -0.285 1.285 15 H -0.273 1.273 16 C -0.067 4.067 17 C -0.115 4.115 18 C 0.533 3.467 19 O -0.516 6.516 20 O -0.507 6.507 21 H 0.072 0.928 22 H 0.091 0.909 23 H 0.060 0.940 24 H 0.140 0.860 25 H 0.036 0.964 26 H 0.035 0.965 27 H 0.264 0.736 28 H 0.142 0.858 29 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.466 -2.824 -1.843 11.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.083 4.083 3 C 0.060 3.940 4 F -0.119 7.119 5 C -0.131 4.131 6 C -0.027 4.027 7 C 0.012 3.988 8 C -0.557 4.557 9 H 0.077 0.923 10 C -0.141 4.141 11 N -0.530 5.530 12 Si 0.724 3.276 13 H -0.205 1.205 14 H -0.211 1.211 15 H -0.197 1.197 16 C -0.085 4.085 17 C -0.116 4.116 18 C 0.379 3.621 19 O -0.407 6.407 20 O -0.318 6.318 21 H 0.091 0.909 22 H 0.110 0.890 23 H 0.079 0.921 24 H 0.158 0.842 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.074 0.926 28 H 0.160 0.840 29 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -11.388 -2.413 -1.913 11.797 hybrid contribution 0.057 -0.285 0.967 1.009 sum -11.331 -2.698 -0.946 11.686 Atomic orbital electron populations 1.20941 0.89686 1.03152 1.03331 1.19685 0.96964 0.90479 1.01193 1.17290 0.89985 0.80475 1.06262 1.91448 1.80418 1.45767 1.94309 1.21430 0.91239 1.00669 0.99785 1.20585 0.99748 0.90513 0.91888 1.18419 0.83000 0.99154 0.98273 1.21016 0.91615 1.51897 0.91131 0.92292 1.24992 0.96814 0.94863 0.97418 1.69945 1.02316 1.49878 1.30830 0.86507 0.78275 0.78283 0.84504 1.20463 1.21093 1.19744 1.21493 0.91546 0.99707 0.95737 1.18573 0.93557 0.88967 1.10499 1.20856 0.85136 0.84293 0.71840 1.90808 1.15328 1.87724 1.46883 1.84634 1.45104 1.16948 1.85111 0.90896 0.89014 0.92122 0.84234 0.94538 0.94694 0.92650 0.83991 0.73153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.67 8.63 36.01 0.31 -1.36 15 2 C -0.08 -1.36 5.92 -104.13 -0.62 -1.98 15 3 C 0.08 1.36 7.24 -39.47 -0.29 1.08 15 4 F -0.14 -2.34 16.37 2.25 0.04 -2.30 15 5 C -0.11 -2.07 9.67 -39.42 -0.38 -2.46 15 6 C -0.03 -0.54 5.06 -104.69 -0.53 -1.07 15 7 C 0.05 1.15 5.10 -29.03 -0.15 1.00 15 8 C -0.52 -13.71 9.09 -34.44 -0.31 -14.02 15 9 H 0.06 1.55 7.74 -52.49 -0.41 1.14 15 10 C 0.06 1.66 5.46 -17.82 -0.10 1.56 15 11 N -0.89 -25.18 13.29 55.43 0.74 -24.44 15 12 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 15 13 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 14 H -0.29 -6.55 7.11 56.52 0.40 -6.15 15 15 H -0.27 -6.24 7.11 56.52 0.40 -5.84 15 16 C -0.07 -1.20 9.26 -39.17 -0.36 -1.57 15 17 C -0.11 -1.92 5.87 -104.99 -0.62 -2.54 15 18 C 0.53 7.99 8.20 34.61 0.28 8.28 15 19 O -0.52 -8.22 14.12 -19.24 -0.27 -8.49 15 20 O -0.51 -6.17 12.70 -40.54 -0.51 -6.69 15 21 H 0.07 1.01 8.14 -51.93 -0.42 0.58 15 22 H 0.09 1.37 5.83 -51.93 -0.30 1.06 15 23 H 0.06 0.81 7.46 -51.94 -0.39 0.42 15 24 H 0.14 2.46 8.06 -52.49 -0.42 2.04 15 25 H 0.04 0.90 8.08 -51.93 -0.42 0.48 15 26 H 0.03 0.87 8.08 -51.93 -0.42 0.45 15 27 H 0.26 7.06 8.31 -40.82 -0.34 6.72 15 28 H 0.14 2.49 7.63 -52.49 -0.40 2.09 15 29 H 0.41 2.80 9.11 45.56 0.42 3.21 15 LS Contribution 265.27 15.07 4.00 4.00 Total: -1.00 -29.34 265.27 -5.69 -35.03 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: -1.90 Total: 0.23 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -2.76 Total: -13.08 kcal Atomic # 7 Polarization: -25.18 SS G_CDS: 0.74 Total: -24.44 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.79 Total: -15.18 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.04 Total: -2.30 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.34 -5.69 -35.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260493546.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.135 kcal (2) G-P(sol) polarization free energy of solvation -29.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds