Wall clock time and date at job start Mon Mar 30 2020 06:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38207 * 120.08752 * 2 1 4 4 F 1.35099 * 119.94968 * 359.94784 * 3 2 1 5 5 C 1.38559 * 120.09576 * 179.97438 * 3 2 1 6 6 C 1.38352 * 120.27885 * 0.02562 * 5 3 2 7 7 C 1.50701 * 119.90741 * 180.02562 * 6 5 3 8 8 C 1.50701 * 109.46765 * 90.00283 * 7 6 5 9 9 H 1.07995 * 120.00116 * 0.02562 * 8 7 6 10 10 C 1.37876 * 119.99912 * 179.97438 * 8 7 6 11 11 N 1.31518 * 120.00018 * 0.02562 * 10 8 7 12 12 Si 1.86793 * 120.00343 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47126 * 90.00245 * 12 10 8 14 14 H 1.48497 * 109.47311 * 210.00534 * 12 10 8 15 15 H 1.48506 * 109.47073 * 330.00354 * 12 10 8 16 16 C 1.37931 * 120.17845 * 359.97438 * 6 5 3 17 17 C 1.39580 * 120.09327 * 179.71439 * 2 1 3 18 18 C 1.47733 * 120.13506 * 0.02562 * 17 2 1 19 19 O 1.21464 * 120.00210 * 6.01822 * 18 17 2 20 20 O 1.34718 * 119.99847 * 186.01373 * 18 17 2 21 21 H 1.09004 * 109.46578 * 96.54896 * 1 2 3 22 22 H 1.09000 * 109.46750 * 216.54341 * 1 2 3 23 23 H 1.08988 * 109.47268 * 336.55016 * 1 2 3 24 24 H 1.07998 * 119.85575 * 179.97438 * 5 3 2 25 25 H 1.08996 * 109.46905 * 210.00104 * 7 6 5 26 26 H 1.08994 * 109.47108 * 330.00363 * 7 6 5 27 27 H 0.96996 * 120.00017 * 179.97438 * 11 10 8 28 28 H 1.08002 * 120.04768 * 180.02562 * 16 6 5 29 29 H 0.96696 * 116.99841 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1999 1.1958 0.0000 4 9 1.5252 2.3663 -0.0011 5 6 3.5855 1.1960 0.0005 6 6 4.2832 0.0014 0.0005 7 6 5.7902 0.0114 0.0017 8 6 6.2913 0.0140 1.4229 9 1 5.5889 0.0085 2.2432 10 6 7.6467 0.0223 1.6760 11 7 8.5021 0.0285 0.6771 12 14 8.2680 0.0248 3.4376 13 1 8.4415 -1.3746 3.9033 14 1 9.5716 0.7331 3.5017 15 1 7.2847 0.7180 4.3083 16 6 3.6033 -1.1987 0.0005 17 6 2.2069 -1.2076 0.0060 18 6 1.4733 -2.4900 0.0118 19 8 0.2638 -2.4983 -0.0989 20 8 2.1460 -3.6502 0.1399 21 1 -0.3632 -0.1172 -1.0210 22 1 -0.3633 -0.8256 0.6119 23 1 -0.3633 0.9427 0.4089 24 1 4.1230 2.1328 0.0001 25 1 6.1598 -0.8759 -0.5122 26 1 6.1480 0.9039 -0.5114 27 1 9.4556 0.0347 0.8551 28 1 4.1501 -2.1301 0.0010 29 1 1.6229 -4.4634 0.1378 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260493546.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:57 Heat of formation + Delta-G solvation = -143.119589 kcal Electronic energy + Delta-G solvation = -16271.125203 eV Core-core repulsion = 13265.423141 eV Total energy + Delta-G solvation = -3005.702061 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.96420 -41.58244 -39.75157 -37.23577 -35.67087 -33.97566 -32.04657 -30.64254 -27.51931 -25.59089 -24.64173 -23.07367 -21.46060 -19.24784 -18.54507 -18.22362 -17.47834 -16.96410 -16.77615 -16.73595 -16.44485 -16.40644 -14.53540 -14.50840 -14.45838 -14.16588 -14.11957 -13.70900 -13.11887 -13.09889 -12.92938 -12.65540 -12.53520 -12.46570 -12.38452 -11.68107 -11.51450 -11.17431 -10.59311 -10.02147 -9.50326 -8.20397 -6.32649 -0.45698 0.14521 1.41472 1.43091 1.45435 1.54709 1.97966 2.39532 2.60612 3.11714 3.22079 3.65436 3.75716 3.94273 4.05545 4.31931 4.61294 4.69314 4.73306 4.88589 5.03121 5.08668 5.15849 5.28399 5.35108 5.59811 5.73842 5.76436 5.80301 6.14606 6.79308 6.98752 7.36330 8.89218 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.025164 B = 0.006967 C = 0.005981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.430147 B = 4018.035213 C = 4680.196202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.076 4.076 3 C 0.080 3.920 4 F -0.135 7.135 5 C -0.116 4.116 6 C -0.048 4.048 7 C 0.056 3.944 8 C -0.531 4.531 9 H 0.057 0.943 10 C 0.010 3.990 11 N -0.926 5.926 12 Si 0.961 3.039 13 H -0.272 1.272 14 H -0.282 1.282 15 H -0.267 1.267 16 C -0.065 4.065 17 C -0.116 4.116 18 C 0.541 3.459 19 O -0.524 6.524 20 O -0.503 6.503 21 H 0.083 0.917 22 H 0.091 0.909 23 H 0.072 0.928 24 H 0.140 0.860 25 H 0.018 0.982 26 H 0.015 0.985 27 H 0.266 0.734 28 H 0.144 0.856 29 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.902 -3.383 -1.023 13.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.077 4.077 3 C 0.061 3.939 4 F -0.114 7.114 5 C -0.135 4.135 6 C -0.048 4.048 7 C 0.020 3.980 8 C -0.569 4.569 9 H 0.075 0.925 10 C -0.188 4.188 11 N -0.566 5.566 12 Si 0.786 3.214 13 H -0.197 1.197 14 H -0.207 1.207 15 H -0.192 1.192 16 C -0.083 4.083 17 C -0.117 4.117 18 C 0.387 3.613 19 O -0.416 6.416 20 O -0.317 6.317 21 H 0.102 0.898 22 H 0.110 0.890 23 H 0.091 0.909 24 H 0.158 0.842 25 H 0.037 0.963 26 H 0.033 0.967 27 H 0.075 0.925 28 H 0.162 0.838 29 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges -12.842 -2.999 -1.092 13.233 hybrid contribution 0.433 -0.151 0.668 0.810 sum -12.410 -3.150 -0.425 12.810 Atomic orbital electron populations 1.20975 0.87829 1.03834 1.04049 1.20003 0.98268 0.90060 0.99389 1.17203 0.89442 0.81007 1.06226 1.91462 1.80124 1.45521 1.94249 1.21392 0.92031 1.00191 0.99883 1.20197 0.97668 0.92045 0.94875 1.18152 0.85893 0.97242 0.96757 1.21353 0.91908 1.51349 0.92320 0.92492 1.25820 0.97109 0.94529 1.01383 1.70054 1.02623 1.50994 1.32913 0.85505 0.77687 0.78539 0.79704 1.19695 1.20748 1.19169 1.21445 0.92328 0.99003 0.95529 1.18723 0.92970 0.90359 1.09652 1.20428 0.84702 0.84451 0.71768 1.90813 1.15490 1.87984 1.47331 1.84578 1.45378 1.17369 1.84341 0.89832 0.89022 0.90917 0.84166 0.96325 0.96701 0.92508 0.83789 0.70237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.91 8.63 71.24 0.61 -2.29 15 2 C -0.08 -2.37 5.92 -19.55 -0.12 -2.49 15 3 C 0.08 2.66 7.24 22.34 0.16 2.83 15 4 F -0.13 -4.23 16.37 44.97 0.74 -3.50 15 5 C -0.12 -4.27 9.67 22.37 0.22 -4.06 15 6 C -0.05 -1.93 5.06 -19.91 -0.10 -2.03 15 7 C 0.06 2.78 5.10 29.10 0.15 2.92 15 8 C -0.53 -28.49 9.09 25.60 0.23 -28.26 15 9 H 0.06 3.01 7.74 -2.91 -0.02 2.98 15 10 C 0.01 0.57 5.46 84.65 0.46 1.03 15 11 N -0.93 -53.22 13.29 21.45 0.28 -52.94 15 12 Si 0.96 42.51 29.54 68.60 2.03 44.54 15 13 H -0.27 -11.63 7.11 99.48 0.71 -10.92 15 14 H -0.28 -12.24 7.11 99.48 0.71 -11.53 15 15 H -0.27 -11.49 7.11 99.48 0.71 -10.78 15 16 C -0.06 -2.31 9.26 22.54 0.21 -2.10 15 17 C -0.12 -3.68 5.87 -20.10 -0.12 -3.80 15 18 C 0.54 14.89 8.20 70.33 0.58 15.47 15 19 O -0.52 -15.22 14.12 19.95 0.28 -14.94 15 20 O -0.50 -10.89 12.70 -56.28 -0.71 -11.61 15 21 H 0.08 2.05 8.14 -2.38 -0.02 2.03 15 22 H 0.09 2.46 5.83 -2.39 -0.01 2.45 15 23 H 0.07 1.73 7.46 -2.39 -0.02 1.71 15 24 H 0.14 5.02 8.06 -2.91 -0.02 4.99 15 25 H 0.02 0.96 8.08 -2.39 -0.02 0.94 15 26 H 0.01 0.77 8.08 -2.39 -0.02 0.75 15 27 H 0.27 14.41 8.31 -92.71 -0.77 13.63 15 28 H 0.14 4.99 7.63 -2.91 -0.02 4.97 15 29 H 0.44 4.54 9.11 -74.06 -0.67 3.86 15 Total: -1.00 -61.54 265.27 5.42 -56.12 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: 0.52 Total: 5.09 kcal Atomic # 6 Polarization: -25.06 SS G_CDS: 2.29 Total: -22.77 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: 0.28 Total: -52.94 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.43 Total: -26.54 kcal Atomic # 9 Polarization: -4.23 SS G_CDS: 0.74 Total: -3.50 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -61.54 5.42 -56.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260493546.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.996 kcal (2) G-P(sol) polarization free energy of solvation -61.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds