Wall clock time and date at job start Mon Mar 30 2020 06:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.76203 * 103.00121 * 2 1 4 4 C 1.39029 * 120.05268 * 359.97438 * 3 2 1 5 5 C 1.38089 * 120.03451 * 179.97438 * 4 3 2 6 6 C 1.38238 * 120.13006 * 359.97438 * 5 4 3 7 7 C 1.50706 * 119.94397 * 179.97438 * 6 5 4 8 8 C 1.38783 * 120.10555 * 0.27187 * 6 5 4 9 9 O 1.35898 * 120.01354 * 179.72914 * 8 6 5 10 10 C 1.38599 * 119.96913 * 359.49295 * 8 6 5 11 11 C 1.50695 * 120.06909 * 180.25378 * 10 8 6 12 12 C 1.50691 * 109.47247 * 270.23334 * 11 10 8 13 13 H 1.08005 * 120.00464 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00375 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99452 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00409 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47125 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46977 * 120.00165 * 16 14 12 19 19 H 1.48502 * 109.47184 * 240.00316 * 16 14 12 20 20 H 1.09001 * 109.47343 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.47299 * 300.00497 * 1 2 3 22 22 H 1.08999 * 109.47397 * 59.99758 * 1 2 3 23 23 H 1.08000 * 119.98380 * 359.96025 * 4 3 2 24 24 H 1.08001 * 119.93697 * 179.97438 * 5 4 3 25 25 H 1.08999 * 109.47015 * 90.00072 * 7 6 5 26 26 H 1.09000 * 109.46646 * 209.99224 * 7 6 5 27 27 H 1.09000 * 109.47248 * 329.99942 * 7 6 5 28 28 H 0.96700 * 113.99940 * 90.00326 * 9 8 6 29 29 H 1.09011 * 109.46973 * 30.23104 * 11 10 8 30 30 H 1.08999 * 109.47472 * 150.22850 * 11 10 8 31 31 H 0.97001 * 119.99784 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1944 2.6660 -0.0005 5 6 1.5055 4.0114 0.0000 6 6 2.8267 4.4181 0.0016 7 6 3.1615 5.8875 0.0016 8 6 3.8453 3.4755 -0.0030 9 8 5.1434 3.8774 -0.0070 10 6 3.5379 2.1240 0.0014 11 6 4.6421 1.0985 0.0022 12 6 5.0114 0.7569 -1.4183 13 1 4.4982 1.2349 -2.2397 14 6 6.0053 -0.1651 -1.6696 15 7 6.6307 -0.7468 -0.6695 16 14 6.4626 -0.5891 -3.4304 17 1 5.6168 0.1966 -4.3644 18 1 7.8922 -0.2614 -3.6631 19 1 6.2428 -2.0391 -3.6635 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 0.1614 2.3509 -0.0016 24 1 0.7151 4.7474 -0.0008 25 1 3.2408 6.2421 1.0293 26 1 4.1107 6.0438 -0.5109 27 1 2.3751 6.4393 -0.5134 28 1 5.5222 3.9926 0.8753 29 1 5.5136 1.5034 0.5168 30 1 4.3024 0.1991 0.5156 31 1 7.3296 -1.3958 -0.8462 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260502584.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:25 Heat of formation + Delta-G solvation = -32.849588 kcal Electronic energy + Delta-G solvation = -14717.979437 eV Core-core repulsion = 12283.272218 eV Total energy + Delta-G solvation = -2434.707219 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.36813 -36.00849 -33.74285 -32.11908 -30.58767 -28.54239 -26.98408 -26.40558 -23.32160 -21.41988 -20.11217 -17.97219 -16.36643 -16.01800 -15.54842 -15.00026 -14.46206 -14.24896 -13.46931 -13.41060 -13.10858 -12.66699 -12.32471 -12.29711 -12.08350 -11.76764 -11.49637 -11.24549 -10.95497 -10.66002 -10.47569 -10.11970 -9.77397 -9.43069 -9.11681 -8.84705 -8.31237 -7.86559 -6.71039 -5.93788 -3.94537 1.65265 1.91905 2.10360 3.04157 3.37039 3.43715 3.50083 4.07153 4.54884 4.86196 5.19395 5.30472 5.32460 5.36528 5.43573 5.52336 5.68530 5.81800 5.87365 6.01165 6.22798 6.36321 6.49285 6.70757 6.84564 7.02423 7.28686 7.59407 7.75161 8.01076 8.30778 8.41497 9.06583 9.66781 11.16505 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.019357 B = 0.010120 C = 0.007414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.165429 B = 2766.064362 C = 3775.699208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 S -0.064 6.064 3 C -0.087 4.087 4 C -0.143 4.143 5 C -0.116 4.116 6 C -0.124 4.124 7 C -0.105 4.105 8 C 0.114 3.886 9 O -0.480 6.480 10 C -0.041 4.041 11 C 0.055 3.945 12 C -0.491 4.491 13 H 0.054 0.946 14 C 0.059 3.941 15 N -0.896 5.896 16 Si 0.893 3.107 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.284 1.284 20 H 0.100 0.900 21 H 0.074 0.926 22 H 0.076 0.924 23 H 0.116 0.884 24 H 0.117 0.883 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.379 0.621 29 H 0.032 0.968 30 H 0.037 0.963 31 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.456 7.485 3.736 13.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.338 4.338 2 S 0.179 5.821 3 C -0.200 4.200 4 C -0.167 4.167 5 C -0.136 4.136 6 C -0.127 4.127 7 C -0.161 4.161 8 C 0.067 3.933 9 O -0.288 6.288 10 C -0.046 4.046 11 C 0.018 3.982 12 C -0.529 4.529 13 H 0.073 0.927 14 C -0.142 4.142 15 N -0.536 5.536 16 Si 0.721 3.279 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.210 1.210 20 H 0.119 0.881 21 H 0.093 0.907 22 H 0.095 0.905 23 H 0.134 0.866 24 H 0.135 0.865 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.233 0.767 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.761 6.253 3.151 12.013 hybrid contribution -0.513 0.871 -0.494 1.125 sum -10.274 7.124 2.657 12.781 Atomic orbital electron populations 1.23772 0.99270 1.06126 1.04609 1.86260 1.01071 1.02814 1.91975 1.21533 0.95747 0.96659 1.06013 1.20993 0.97628 0.93126 1.04981 1.20517 0.95038 0.94959 1.03057 1.20138 0.93112 0.95770 1.03676 1.20601 1.02365 0.91638 1.01536 1.18000 0.83531 0.90226 1.01510 1.84869 1.22847 1.88854 1.32267 1.20726 0.94244 0.95255 0.94424 1.18257 0.90288 0.91222 0.98433 1.20878 1.18452 1.22695 0.90874 0.92741 1.24925 0.96147 0.96068 0.97034 1.69961 1.24794 1.28422 1.30415 0.86503 0.78167 0.78088 0.85116 1.19749 1.21093 1.21007 0.88148 0.90703 0.90497 0.86602 0.86494 0.92002 0.91055 0.92196 0.76669 0.94939 0.94540 0.93087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 9.15 101.05 0.92 -1.31 16 2 S -0.06 -1.24 20.77 -107.50 -2.23 -3.48 16 3 C -0.09 -1.76 6.11 -39.06 -0.24 -2.00 16 4 C -0.14 -2.43 9.36 -39.34 -0.37 -2.80 16 5 C -0.12 -1.84 9.69 -39.64 -0.38 -2.22 16 6 C -0.12 -2.11 5.90 -104.42 -0.62 -2.73 16 7 C -0.10 -1.40 9.79 36.01 0.35 -1.04 16 8 C 0.11 2.31 6.64 -39.25 -0.26 2.05 16 9 O -0.48 -9.37 11.58 -19.42 -0.22 -9.59 16 10 C -0.04 -0.92 5.10 -104.26 -0.53 -1.46 16 11 C 0.06 1.46 4.44 -29.04 -0.13 1.33 16 12 C -0.49 -14.22 9.09 -34.44 -0.31 -14.53 16 13 H 0.05 1.62 7.74 -52.48 -0.41 1.22 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 16 Si 0.89 22.46 29.54 -169.99 -5.02 17.44 16 17 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 20 H 0.10 1.14 8.14 -51.92 -0.42 0.72 16 21 H 0.07 0.88 7.75 -51.92 -0.40 0.48 16 22 H 0.08 0.96 7.74 -51.92 -0.40 0.55 16 23 H 0.12 1.64 5.87 -52.49 -0.31 1.33 16 24 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.99 7.52 -51.93 -0.39 0.60 16 27 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 28 H 0.38 5.55 9.06 45.56 0.41 5.97 16 29 H 0.03 0.89 7.54 -51.92 -0.39 0.50 16 30 H 0.04 1.02 6.78 -51.93 -0.35 0.66 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 277.96 15.07 4.19 4.19 Total: -1.00 -32.51 277.96 -7.28 -39.78 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -3.06 Total: 1.00 kcal Atomic # 6 Polarization: -21.43 SS G_CDS: -1.66 Total: -23.10 kcal Atomic # 7 Polarization: -26.99 SS G_CDS: 0.74 Total: -26.25 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: -0.22 Total: -9.59 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Atomic # 16 Polarization: -1.24 SS G_CDS: -2.23 Total: -3.48 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -32.51 -7.28 -39.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260502584.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.934 kcal (2) G-P(sol) polarization free energy of solvation -32.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds