Wall clock time and date at job start Mon Mar 30 2020 06:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.76203 * 103.00121 * 2 1 4 4 C 1.39029 * 120.05268 * 359.97438 * 3 2 1 5 5 C 1.38089 * 120.03451 * 179.97438 * 4 3 2 6 6 C 1.38238 * 120.13006 * 359.97438 * 5 4 3 7 7 C 1.50706 * 119.94397 * 179.97438 * 6 5 4 8 8 C 1.38783 * 120.10555 * 0.27187 * 6 5 4 9 9 O 1.35898 * 120.01354 * 179.72914 * 8 6 5 10 10 C 1.38599 * 119.96913 * 359.49295 * 8 6 5 11 11 C 1.50695 * 120.06909 * 180.25378 * 10 8 6 12 12 C 1.50691 * 109.47247 * 270.23334 * 11 10 8 13 13 H 1.08005 * 120.00464 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00375 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99452 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00409 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47125 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46977 * 120.00165 * 16 14 12 19 19 H 1.48502 * 109.47184 * 240.00316 * 16 14 12 20 20 H 1.09001 * 109.47343 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.47299 * 300.00497 * 1 2 3 22 22 H 1.08999 * 109.47397 * 59.99758 * 1 2 3 23 23 H 1.08000 * 119.98380 * 359.96025 * 4 3 2 24 24 H 1.08001 * 119.93697 * 179.97438 * 5 4 3 25 25 H 1.08999 * 109.47015 * 90.00072 * 7 6 5 26 26 H 1.09000 * 109.46646 * 209.99224 * 7 6 5 27 27 H 1.09000 * 109.47248 * 329.99942 * 7 6 5 28 28 H 0.96700 * 113.99940 * 90.00326 * 9 8 6 29 29 H 1.09011 * 109.46973 * 30.23104 * 11 10 8 30 30 H 1.08999 * 109.47472 * 150.22850 * 11 10 8 31 31 H 0.97001 * 119.99784 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1944 2.6660 -0.0005 5 6 1.5055 4.0114 0.0000 6 6 2.8267 4.4181 0.0016 7 6 3.1615 5.8875 0.0016 8 6 3.8453 3.4755 -0.0030 9 8 5.1434 3.8774 -0.0070 10 6 3.5379 2.1240 0.0014 11 6 4.6421 1.0985 0.0022 12 6 5.0114 0.7569 -1.4183 13 1 4.4982 1.2349 -2.2397 14 6 6.0053 -0.1651 -1.6696 15 7 6.6307 -0.7468 -0.6695 16 14 6.4626 -0.5891 -3.4304 17 1 5.6168 0.1966 -4.3644 18 1 7.8922 -0.2614 -3.6631 19 1 6.2428 -2.0391 -3.6635 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 0.1614 2.3509 -0.0016 24 1 0.7151 4.7474 -0.0008 25 1 3.2408 6.2421 1.0293 26 1 4.1107 6.0438 -0.5109 27 1 2.3751 6.4393 -0.5134 28 1 5.5222 3.9926 0.8753 29 1 5.5136 1.5034 0.5168 30 1 4.3024 0.1991 0.5156 31 1 7.3296 -1.3958 -0.8462 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260502584.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:25 Heat of formation + Delta-G solvation = -54.320265 kcal Electronic energy + Delta-G solvation = -14718.910475 eV Core-core repulsion = 12283.272218 eV Total energy + Delta-G solvation = -2435.638258 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.81015 -37.46062 -35.64849 -33.81071 -32.14219 -29.66882 -28.83698 -27.65620 -25.30915 -22.82008 -21.68925 -19.41267 -18.52578 -17.57167 -17.03111 -16.63749 -16.12756 -15.76778 -14.79096 -14.59525 -14.35957 -14.17648 -14.03244 -13.69868 -13.38992 -13.21759 -13.00522 -12.93140 -12.57362 -12.56356 -12.27066 -11.84979 -11.51501 -11.35297 -10.68817 -10.52259 -10.22883 -9.39417 -8.25883 -8.09816 -6.25306 0.26444 0.47311 0.76164 1.36260 1.36704 1.50049 1.75548 2.40155 2.69730 3.14857 3.47529 3.99478 4.08671 4.18921 4.33659 4.35036 4.52694 4.73764 4.83620 4.89223 4.89996 5.03416 5.12570 5.25176 5.38528 5.40563 5.60747 5.76132 5.84592 5.96681 6.20870 6.81404 6.96754 7.39503 8.93459 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.019357 B = 0.010120 C = 0.007414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.165429 B = 2766.064362 C = 3775.699208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.155 6.155 3 C -0.094 4.094 4 C -0.139 4.139 5 C -0.102 4.102 6 C -0.123 4.123 7 C -0.100 4.100 8 C 0.096 3.904 9 O -0.498 6.498 10 C -0.087 4.087 11 C 0.071 3.929 12 C -0.501 4.501 13 H 0.038 0.962 14 C 0.006 3.994 15 N -0.929 5.929 16 Si 0.958 3.042 17 H -0.271 1.271 18 H -0.276 1.276 19 H -0.274 1.274 20 H 0.120 0.880 21 H 0.096 0.904 22 H 0.090 0.910 23 H 0.151 0.849 24 H 0.164 0.836 25 H 0.084 0.916 26 H 0.059 0.941 27 H 0.086 0.914 28 H 0.394 0.606 29 H 0.003 0.997 30 H 0.011 0.989 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.022 9.256 3.087 16.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 S 0.087 5.913 3 C -0.206 4.206 4 C -0.163 4.163 5 C -0.122 4.122 6 C -0.126 4.126 7 C -0.157 4.157 8 C 0.049 3.951 9 O -0.309 6.309 10 C -0.093 4.093 11 C 0.034 3.966 12 C -0.539 4.539 13 H 0.056 0.944 14 C -0.191 4.191 15 N -0.570 5.570 16 Si 0.783 3.217 17 H -0.195 1.195 18 H -0.201 1.201 19 H -0.199 1.199 20 H 0.139 0.861 21 H 0.114 0.886 22 H 0.109 0.891 23 H 0.168 0.832 24 H 0.182 0.818 25 H 0.102 0.898 26 H 0.078 0.922 27 H 0.105 0.895 28 H 0.251 0.749 29 H 0.022 0.978 30 H 0.029 0.971 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.322 8.037 2.515 14.925 hybrid contribution 0.181 0.379 -0.234 0.481 sum -12.142 8.417 2.281 14.949 Atomic orbital electron populations 1.23796 0.92924 1.08058 1.06253 1.86449 1.08102 1.04405 1.92337 1.21597 0.95613 0.96951 1.06481 1.21414 0.98353 0.93060 1.03426 1.21087 0.95592 0.95388 1.00088 1.20541 0.92842 0.97129 1.02067 1.20658 1.02683 0.89146 1.03196 1.18267 0.84397 0.90117 1.02280 1.84797 1.23403 1.88750 1.33966 1.20535 0.94357 0.95510 0.98866 1.17851 0.90776 0.91513 0.96491 1.21061 1.18395 1.22647 0.91803 0.94352 1.25773 0.96092 0.95944 1.01301 1.70073 1.25355 1.29016 1.32513 0.85505 0.78081 0.78157 0.79990 1.19525 1.20123 1.19944 0.86119 0.88560 0.89089 0.83184 0.81820 0.89766 0.92206 0.89543 0.74870 0.97836 0.97055 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 9.15 113.37 1.04 -2.33 16 2 S -0.16 -6.12 20.77 -56.49 -1.17 -7.29 16 3 C -0.09 -3.81 6.11 22.61 0.14 -3.67 16 4 C -0.14 -4.29 9.36 22.42 0.21 -4.08 16 5 C -0.10 -2.81 9.69 22.23 0.22 -2.59 16 6 C -0.12 -3.88 5.90 -19.73 -0.12 -3.99 16 7 C -0.10 -2.32 9.79 71.24 0.70 -1.62 16 8 C 0.10 3.91 6.64 22.49 0.15 4.06 16 9 O -0.50 -20.08 11.58 -92.40 -1.07 -21.15 16 10 C -0.09 -4.08 5.10 -19.63 -0.10 -4.18 16 11 C 0.07 4.00 4.44 29.10 0.13 4.13 16 12 C -0.50 -30.42 9.09 25.60 0.23 -30.19 16 13 H 0.04 2.38 7.74 -2.91 -0.02 2.36 16 14 C 0.01 0.38 5.46 84.65 0.46 0.85 16 15 N -0.93 -58.11 13.29 21.45 0.28 -57.82 16 16 Si 0.96 47.15 29.54 68.60 2.03 49.17 16 17 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 18 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 19 H -0.27 -12.96 7.11 99.48 0.71 -12.26 16 20 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 21 H 0.10 1.89 7.75 -2.39 -0.02 1.87 16 22 H 0.09 1.92 7.74 -2.39 -0.02 1.91 16 23 H 0.15 3.53 5.87 -2.91 -0.02 3.51 16 24 H 0.16 3.02 8.06 -2.91 -0.02 2.99 16 25 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.06 1.54 7.52 -2.39 -0.02 1.52 16 27 H 0.09 1.56 8.08 -2.39 -0.02 1.54 16 28 H 0.39 12.18 9.06 -74.06 -0.67 11.51 16 29 H 0.00 0.21 7.54 -2.38 -0.02 0.19 16 30 H 0.01 0.69 6.78 -2.39 -0.02 0.67 16 31 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -74.67 277.96 3.59 -71.08 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: 0.47 Total: 9.64 kcal Atomic # 6 Polarization: -46.68 SS G_CDS: 3.06 Total: -43.62 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: 0.28 Total: -57.82 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -1.07 Total: -21.15 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.17 kcal Atomic # 16 Polarization: -6.12 SS G_CDS: -1.17 Total: -7.29 kcal Total: -74.67 3.59 -71.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260502584.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.758 kcal (2) G-P(sol) polarization free energy of solvation -74.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds