Wall clock time and date at job start Mon Mar 30 2020 05:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37838 * 120.06327 * 2 1 4 4 C 1.38644 * 120.12522 * 180.02562 * 3 2 1 5 5 F 1.35101 * 119.87667 * 179.97438 * 4 3 2 6 6 C 1.38695 * 120.24772 * 359.97438 * 4 3 2 7 7 C 1.50699 * 119.93700 * 179.97438 * 6 4 3 8 8 C 1.50701 * 109.46850 * 280.02338 * 7 6 4 9 9 H 1.08000 * 120.00135 * 359.97438 * 8 7 6 10 10 C 1.37881 * 119.99869 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99886 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 119.99783 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.46707 * 60.00197 * 12 10 8 14 14 H 1.48494 * 109.46964 * 179.97438 * 12 10 8 15 15 H 1.48493 * 109.47309 * 299.99926 * 12 10 8 16 16 C 1.37800 * 120.12292 * 0.02562 * 6 4 3 17 17 C 1.39687 * 120.06309 * 180.02562 * 2 1 3 18 18 C 1.47604 * 120.12187 * 359.95444 * 17 2 1 19 19 O 1.21488 * 119.99703 * 6.25239 * 18 17 2 20 20 O 1.34727 * 119.99714 * 186.25781 * 18 17 2 21 21 H 1.08995 * 109.47451 * 96.59119 * 1 2 3 22 22 H 1.08999 * 109.47078 * 216.59608 * 1 2 3 23 23 H 1.09008 * 109.47127 * 336.58613 * 1 2 3 24 24 H 1.08002 * 119.93423 * 359.74609 * 3 2 1 25 25 H 1.08999 * 109.47577 * 40.02127 * 7 6 4 26 26 H 1.09002 * 109.46994 * 160.02495 * 7 6 4 27 27 H 0.97001 * 119.99256 * 180.02562 * 11 10 8 28 28 H 1.08003 * 120.06026 * 180.02562 * 16 6 4 29 29 H 0.96697 * 116.99658 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1930 0.0000 4 6 3.5840 1.1945 -0.0005 5 9 4.2557 2.3666 -0.0011 6 6 4.2839 -0.0029 -0.0005 7 6 5.7909 0.0069 -0.0017 8 6 6.2904 0.2568 -1.4014 9 1 5.5871 0.3943 -2.2093 10 6 7.6455 0.3089 -1.6507 11 7 8.5020 0.1409 -0.6669 12 14 8.2648 0.6179 -3.3858 13 1 7.7612 1.9304 -3.8645 14 1 9.7497 0.6277 -3.3870 15 1 7.7757 -0.4578 -4.2849 16 6 3.6039 -1.2015 -0.0005 17 6 2.2068 -1.2090 -0.0005 18 6 1.4729 -2.4896 -0.0001 19 8 0.2634 -2.4966 -0.1139 20 8 2.1444 -3.6507 0.1266 21 1 -0.3634 -0.1180 -1.0208 22 1 -0.3633 -0.8251 0.6127 23 1 -0.3634 0.9431 0.4084 24 1 1.6575 2.1282 -0.0041 25 1 6.1497 0.7965 0.6585 26 1 6.1607 -0.9564 0.3495 27 1 9.4553 0.1779 -0.8423 28 1 4.1500 -2.1333 -0.0001 29 1 1.6206 -4.4636 0.1210 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260508339.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:44 Heat of formation + Delta-G solvation = -144.523363 kcal Electronic energy + Delta-G solvation = -16358.756654 eV Core-core repulsion = 13352.993720 eV Total energy + Delta-G solvation = -3005.762934 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.87082 -41.55069 -39.67947 -37.18295 -35.74378 -33.95303 -32.08307 -30.58563 -27.57088 -25.26751 -24.57247 -23.33849 -21.37172 -19.15183 -18.59453 -18.09386 -17.81729 -17.39686 -16.78848 -16.51731 -16.41349 -15.33588 -14.57419 -14.46162 -14.40689 -14.32074 -14.06759 -13.84224 -13.42693 -13.11091 -12.89085 -12.56724 -12.52875 -12.44140 -12.29223 -11.59626 -11.55621 -11.18639 -10.62138 -9.94614 -9.52609 -8.22669 -6.35690 -0.44876 0.24316 1.39007 1.42017 1.44379 1.50472 2.10259 2.37779 2.60825 3.09205 3.23903 3.68454 3.79665 4.00865 4.13269 4.36989 4.64173 4.78508 4.83201 4.85707 5.04364 5.08857 5.21195 5.27965 5.41981 5.61669 5.64975 5.69292 5.81918 6.10957 6.74453 7.02471 7.32754 8.87027 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.028123 B = 0.007019 C = 0.006202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.379372 B = 3988.098458 C = 4513.718792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.008 4.008 3 C -0.160 4.160 4 C 0.122 3.878 5 F -0.141 7.141 6 C -0.121 4.121 7 C 0.060 3.940 8 C -0.532 4.532 9 H 0.053 0.947 10 C 0.009 3.991 11 N -0.927 5.927 12 Si 0.963 3.037 13 H -0.270 1.270 14 H -0.279 1.279 15 H -0.265 1.265 16 C -0.034 4.034 17 C -0.156 4.156 18 C 0.540 3.460 19 O -0.526 6.526 20 O -0.507 6.507 21 H 0.082 0.918 22 H 0.087 0.913 23 H 0.087 0.913 24 H 0.171 0.829 25 H 0.005 0.995 26 H 0.018 0.982 27 H 0.267 0.733 28 H 0.144 0.856 29 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.722 -3.106 1.388 15.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.008 4.008 3 C -0.179 4.179 4 C 0.102 3.898 5 F -0.119 7.119 6 C -0.122 4.122 7 C 0.023 3.977 8 C -0.570 4.570 9 H 0.071 0.929 10 C -0.190 4.190 11 N -0.566 5.566 12 Si 0.788 3.212 13 H -0.196 1.196 14 H -0.204 1.204 15 H -0.190 1.190 16 C -0.052 4.052 17 C -0.158 4.158 18 C 0.386 3.614 19 O -0.419 6.419 20 O -0.321 6.321 21 H 0.100 0.900 22 H 0.105 0.895 23 H 0.106 0.894 24 H 0.188 0.812 25 H 0.023 0.977 26 H 0.037 0.963 27 H 0.076 0.924 28 H 0.162 0.838 29 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges -14.598 -2.734 1.408 14.918 hybrid contribution 0.858 -0.121 -0.663 1.092 sum -13.739 -2.855 0.745 14.052 Atomic orbital electron populations 1.21085 0.87390 1.04351 1.03936 1.19989 0.97984 0.89777 0.93077 1.21131 0.90479 1.00409 1.05838 1.18200 0.90775 0.80817 0.99994 1.91470 1.81291 1.45917 1.93272 1.20465 0.98279 0.92414 1.01052 1.18008 0.86090 0.96848 0.96737 1.21281 0.92019 1.49821 0.93881 0.92864 1.25870 0.96989 0.94600 1.01535 1.70058 1.02599 1.50367 1.33614 0.85525 0.77203 0.79130 0.79391 1.19559 1.20432 1.19013 1.21203 0.92681 0.97677 0.93659 1.19061 0.92862 0.91324 1.12522 1.20487 0.84788 0.84401 0.71700 1.90813 1.15421 1.88012 1.47610 1.84583 1.45560 1.17481 1.84494 0.89990 0.89501 0.89419 0.81192 0.97686 0.96349 0.92448 0.83823 0.70423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.45 8.73 71.24 0.62 -1.82 15 2 C -0.01 -0.22 5.91 -19.61 -0.12 -0.34 15 3 C -0.16 -4.79 9.64 22.27 0.21 -4.58 15 4 C 0.12 4.76 7.24 22.48 0.16 4.93 15 5 F -0.14 -6.07 16.65 44.97 0.75 -5.32 15 6 C -0.12 -5.22 5.08 -19.86 -0.10 -5.32 15 7 C 0.06 3.18 4.82 29.10 0.14 3.32 15 8 C -0.53 -30.24 9.09 25.60 0.23 -30.01 15 9 H 0.05 2.98 7.74 -2.91 -0.02 2.96 15 10 C 0.01 0.50 5.46 84.66 0.46 0.96 15 11 N -0.93 -55.46 13.29 21.45 0.28 -55.18 15 12 Si 0.96 44.14 29.54 68.60 2.03 46.17 15 13 H -0.27 -12.10 7.11 99.48 0.71 -11.39 15 14 H -0.28 -12.39 7.11 99.48 0.71 -11.69 15 15 H -0.27 -11.65 7.11 99.48 0.71 -10.94 15 16 C -0.03 -1.24 9.23 22.52 0.21 -1.03 15 17 C -0.16 -4.88 5.87 -20.10 -0.12 -5.00 15 18 C 0.54 14.66 8.20 70.29 0.58 15.23 15 19 O -0.53 -14.86 14.13 19.87 0.28 -14.58 15 20 O -0.51 -11.05 12.70 -56.37 -0.72 -11.76 15 21 H 0.08 1.74 8.14 -2.39 -0.02 1.73 15 22 H 0.09 2.04 5.85 -2.39 -0.01 2.03 15 23 H 0.09 1.46 8.04 -2.38 -0.02 1.44 15 24 H 0.17 3.88 8.06 -2.91 -0.02 3.86 15 25 H 0.00 0.28 7.94 -2.39 -0.02 0.26 15 26 H 0.02 1.00 8.00 -2.39 -0.02 0.98 15 27 H 0.27 14.98 8.31 -92.71 -0.77 14.21 15 28 H 0.14 5.11 7.60 -2.91 -0.02 5.08 15 29 H 0.43 4.62 9.11 -74.06 -0.67 3.94 15 Total: -1.00 -67.29 265.66 5.43 -61.87 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: 0.52 Total: 2.47 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: 2.28 Total: -23.66 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: 0.28 Total: -55.18 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -0.43 Total: -26.35 kcal Atomic # 9 Polarization: -6.07 SS G_CDS: 0.75 Total: -5.32 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -67.29 5.43 -61.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260508339.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.654 kcal (2) G-P(sol) polarization free energy of solvation -67.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds