Wall clock time and date at job start Mon Mar 30 2020 05:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99930 * 2 1 4 4 H 1.48503 * 109.46719 * 239.99530 * 3 2 1 5 5 H 1.48502 * 109.46862 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47390 * 119.99419 * 3 2 1 7 7 C 1.37876 * 119.99970 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99981 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99898 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46768 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.46765 * 179.97438 * 10 9 7 12 12 C 1.37969 * 120.05152 * 261.28331 * 11 10 9 13 13 C 1.38308 * 120.17614 * 179.72575 * 12 11 10 14 14 C 1.38599 * 120.28069 * 0.24954 * 13 12 11 15 15 F 1.35104 * 119.95074 * 180.02562 * 14 13 12 16 16 C 1.38154 * 120.09664 * 0.02683 * 14 13 12 17 17 C 1.39613 * 120.04842 * 81.53463 * 11 10 9 18 18 C 1.47732 * 120.13924 * 0.02562 * 17 11 10 19 19 O 1.21480 * 119.99610 * 354.77857 * 18 17 11 20 20 O 1.34704 * 120.00287 * 174.77811 * 18 17 11 21 21 H 0.97003 * 119.99852 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.47199 * 59.99582 * 9 7 2 23 23 H 1.09000 * 109.47006 * 299.99249 * 9 7 2 24 24 H 1.09004 * 109.46842 * 60.00206 * 10 9 7 25 25 H 1.08994 * 109.47287 * 300.00167 * 10 9 7 26 26 H 1.07995 * 119.91026 * 359.97438 * 12 11 10 27 27 H 1.08006 * 119.85897 * 180.27990 * 13 12 11 28 28 H 1.08002 * 120.08956 * 179.97438 * 16 14 13 29 29 H 0.96699 * 116.99991 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4918 -4.9672 0.0012 12 6 1.3034 -5.6557 1.1819 13 6 0.6074 -6.8508 1.1863 14 6 0.0989 -7.3678 0.0051 15 9 -0.5805 -8.5356 0.0172 16 6 0.2857 -6.6908 -1.1845 17 6 0.9878 -5.4840 -1.1938 18 6 1.1916 -4.7542 -2.4620 19 8 1.7148 -3.6579 -2.4545 20 8 0.7975 -5.3045 -3.6267 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6241 -2.5567 0.8904 24 1 2.8719 -3.6043 0.8906 25 1 2.8720 -3.6043 -0.8894 26 1 1.6971 -5.2583 2.1057 27 1 0.4590 -7.3833 2.1142 28 1 -0.1103 -7.0939 -2.1049 29 1 0.9516 -4.7890 -4.4302 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260517766.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:44 Heat of formation + Delta-G solvation = -119.086854 kcal Electronic energy + Delta-G solvation = -16376.888796 eV Core-core repulsion = 13372.228872 eV Total energy + Delta-G solvation = -3004.659924 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.81362 -40.28053 -38.35816 -35.87598 -33.80079 -31.93006 -31.41736 -28.81028 -25.35255 -24.23769 -22.37475 -21.37253 -20.09501 -18.07122 -17.38392 -16.38714 -16.27010 -15.59139 -15.55173 -15.16010 -15.00078 -14.39834 -13.71840 -13.47324 -13.10481 -12.70012 -12.34123 -12.07278 -11.68678 -11.39605 -11.27397 -10.90262 -10.85501 -10.57293 -10.08787 -9.62516 -9.44146 -9.08295 -9.02063 -8.26835 -8.25212 -5.91977 -3.92514 0.77391 1.29752 2.79246 3.23371 3.38003 3.41751 3.44695 3.79248 4.28859 4.52357 4.78762 4.89967 5.17467 5.29481 5.44262 5.56791 5.77857 5.99029 6.12867 6.23007 6.28873 6.61161 6.75462 6.86297 6.86814 7.17232 7.74038 7.93272 8.06375 8.27375 8.50184 9.12641 9.69400 11.19718 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.032307 B = 0.006521 C = 0.005842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.489943 B = 4292.813550 C = 4792.062035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.509 4.509 8 H 0.054 0.946 9 C 0.040 3.960 10 C -0.090 4.090 11 C -0.002 4.002 12 C -0.107 4.107 13 C -0.116 4.116 14 C 0.062 3.938 15 F -0.143 7.143 16 C -0.097 4.097 17 C -0.102 4.102 18 C 0.508 3.492 19 O -0.459 6.459 20 O -0.523 6.523 21 H 0.259 0.741 22 H 0.026 0.974 23 H 0.010 0.990 24 H 0.058 0.942 25 H 0.088 0.912 26 H 0.142 0.858 27 H 0.137 0.863 28 H 0.145 0.855 29 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.163 -14.247 -1.810 14.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.547 4.547 8 H 0.072 0.928 9 C 0.003 3.997 10 C -0.127 4.127 11 C -0.002 4.002 12 C -0.125 4.125 13 C -0.135 4.135 14 C 0.043 3.957 15 F -0.122 7.122 16 C -0.116 4.116 17 C -0.103 4.103 18 C 0.350 3.650 19 O -0.344 6.344 20 O -0.336 6.336 21 H 0.069 0.931 22 H 0.044 0.956 23 H 0.028 0.972 24 H 0.077 0.923 25 H 0.106 0.894 26 H 0.160 0.840 27 H 0.155 0.845 28 H 0.163 0.837 29 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 1.068 -14.076 -1.446 14.190 hybrid contribution 0.248 1.033 -0.527 1.186 sum 1.316 -13.043 -1.972 13.256 Atomic orbital electron populations 1.69962 1.06018 1.26491 1.51332 1.24986 0.94819 0.99075 0.95592 0.86671 0.79559 0.83279 0.78540 1.20304 1.21401 1.20319 1.21130 0.92886 0.90800 1.49875 0.92798 1.18989 0.93485 0.90046 0.97194 1.21202 0.99033 0.90077 1.02419 1.20669 0.92941 0.96035 0.90564 1.20972 0.99236 0.93847 0.98395 1.21367 0.97973 0.96973 0.97189 1.17432 0.99151 0.84470 0.94658 1.91483 1.77932 1.45414 1.97338 1.21316 0.98209 0.94265 0.97774 1.18697 1.04669 0.95726 0.91227 1.20754 0.76339 0.84150 0.83731 1.91087 1.37757 1.18918 1.86670 1.84506 1.78367 1.53045 1.17678 0.93109 0.95564 0.97180 0.92307 0.89419 0.83973 0.84479 0.83722 0.73035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.64 13.29 55.43 0.74 -26.90 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 3 Si 0.89 22.17 29.54 -169.99 -5.02 17.14 15 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 15 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 15 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 7 C -0.51 -14.73 9.11 -34.44 -0.31 -15.04 15 8 H 0.05 1.51 7.74 -52.49 -0.41 1.11 15 9 C 0.04 1.05 4.48 -27.88 -0.12 0.93 15 10 C -0.09 -1.90 4.54 -27.88 -0.13 -2.03 15 11 C 0.00 -0.03 5.17 -104.21 -0.54 -0.57 15 12 C -0.11 -1.56 9.65 -39.65 -0.38 -1.94 15 13 C -0.12 -1.50 10.02 -39.42 -0.39 -1.90 15 14 C 0.06 0.85 7.29 -39.48 -0.29 0.57 15 15 F -0.14 -1.93 17.26 2.25 0.04 -1.89 15 16 C -0.10 -1.39 9.59 -39.10 -0.38 -1.76 15 17 C -0.10 -1.71 5.87 -104.99 -0.62 -2.33 15 18 C 0.51 8.82 8.13 34.61 0.28 9.10 15 19 O -0.46 -9.77 12.37 -19.25 -0.24 -10.01 15 20 O -0.52 -6.86 12.70 -40.50 -0.51 -7.37 15 21 H 0.26 7.55 8.31 -40.82 -0.34 7.21 15 22 H 0.03 0.75 6.55 -51.93 -0.34 0.41 15 23 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 15 24 H 0.06 1.15 8.02 -51.93 -0.42 0.73 15 25 H 0.09 1.92 5.96 -51.93 -0.31 1.61 15 26 H 0.14 1.82 8.04 -52.49 -0.42 1.40 15 27 H 0.14 1.37 8.06 -52.48 -0.42 0.95 15 28 H 0.14 1.82 7.62 -52.49 -0.40 1.42 15 29 H 0.41 3.62 9.11 45.56 0.42 4.03 15 LS Contribution 263.35 15.07 3.97 3.97 Total: -1.00 -33.32 263.35 -5.87 -39.19 By element: Atomic # 1 Polarization: 1.17 SS G_CDS: -1.86 Total: -0.69 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: -2.98 Total: -13.43 kcal Atomic # 7 Polarization: -27.64 SS G_CDS: 0.74 Total: -26.90 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.75 Total: -17.38 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -33.32 -5.87 -39.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260517766.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.900 kcal (2) G-P(sol) polarization free energy of solvation -33.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds