Wall clock time and date at job start Mon Mar 30 2020 05:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99930 * 2 1 4 4 H 1.48503 * 109.46719 * 239.99530 * 3 2 1 5 5 H 1.48502 * 109.46862 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47390 * 119.99419 * 3 2 1 7 7 C 1.37876 * 119.99970 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99981 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99898 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46768 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.46765 * 179.97438 * 10 9 7 12 12 C 1.37969 * 120.05152 * 261.28331 * 11 10 9 13 13 C 1.38308 * 120.17614 * 179.72575 * 12 11 10 14 14 C 1.38599 * 120.28069 * 0.24954 * 13 12 11 15 15 F 1.35104 * 119.95074 * 180.02562 * 14 13 12 16 16 C 1.38154 * 120.09664 * 0.02683 * 14 13 12 17 17 C 1.39613 * 120.04842 * 81.53463 * 11 10 9 18 18 C 1.47732 * 120.13924 * 0.02562 * 17 11 10 19 19 O 1.21480 * 119.99610 * 354.77857 * 18 17 11 20 20 O 1.34704 * 120.00287 * 174.77811 * 18 17 11 21 21 H 0.97003 * 119.99852 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.47199 * 59.99582 * 9 7 2 23 23 H 1.09000 * 109.47006 * 299.99249 * 9 7 2 24 24 H 1.09004 * 109.46842 * 60.00206 * 10 9 7 25 25 H 1.08994 * 109.47287 * 300.00167 * 10 9 7 26 26 H 1.07995 * 119.91026 * 359.97438 * 12 11 10 27 27 H 1.08006 * 119.85897 * 180.27990 * 13 12 11 28 28 H 1.08002 * 120.08956 * 179.97438 * 16 14 13 29 29 H 0.96699 * 116.99991 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4918 -4.9672 0.0012 12 6 1.3034 -5.6557 1.1819 13 6 0.6074 -6.8508 1.1863 14 6 0.0989 -7.3678 0.0051 15 9 -0.5805 -8.5356 0.0172 16 6 0.2857 -6.6908 -1.1845 17 6 0.9878 -5.4840 -1.1938 18 6 1.1916 -4.7542 -2.4620 19 8 1.7148 -3.6579 -2.4545 20 8 0.7975 -5.3045 -3.6267 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6241 -2.5567 0.8904 24 1 2.8719 -3.6043 0.8906 25 1 2.8720 -3.6043 -0.8894 26 1 1.6971 -5.2583 2.1057 27 1 0.4590 -7.3833 2.1142 28 1 -0.1103 -7.0939 -2.1049 29 1 0.9516 -4.7890 -4.4302 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260517766.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:43 Heat of formation + Delta-G solvation = -140.607498 kcal Electronic energy + Delta-G solvation = -16377.822001 eV Core-core repulsion = 13372.228872 eV Total energy + Delta-G solvation = -3005.593129 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.90128 -41.58905 -39.58716 -37.18763 -35.70253 -33.76683 -32.58492 -30.48835 -27.09131 -25.64130 -23.83797 -22.89250 -21.56404 -19.27782 -18.64944 -18.50919 -17.46316 -16.81590 -16.70843 -16.51873 -16.43802 -16.23262 -15.03995 -14.81659 -14.45771 -14.36252 -13.85991 -13.67028 -13.36110 -12.84765 -12.70625 -12.59946 -12.48693 -12.33830 -11.83099 -11.53451 -11.26164 -10.96716 -10.48457 -10.22918 -9.57490 -8.15725 -6.24715 -0.42761 0.11689 1.39078 1.43161 1.50514 1.52282 2.05547 2.42635 2.57874 3.15761 3.17587 3.65843 3.83385 3.92134 4.11816 4.41960 4.58649 4.71338 4.88296 4.91099 4.95319 5.10443 5.24778 5.39150 5.48767 5.66887 5.75948 5.87806 5.94769 6.30303 6.89872 7.04882 7.42194 8.96254 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.032307 B = 0.006521 C = 0.005842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.489943 B = 4292.813550 C = 4792.062035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.963 3.037 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.531 4.531 8 H 0.056 0.944 9 C 0.049 3.951 10 C -0.076 4.076 11 C -0.029 4.029 12 C -0.105 4.105 13 C -0.100 4.100 14 C 0.067 3.933 15 F -0.137 7.137 16 C -0.091 4.091 17 C -0.120 4.120 18 C 0.512 3.488 19 O -0.510 6.510 20 O -0.506 6.506 21 H 0.261 0.739 22 H -0.006 1.006 23 H -0.014 1.014 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.160 0.840 27 H 0.175 0.825 28 H 0.163 0.837 29 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.465 -15.474 -1.185 15.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.199 4.199 3 Si 0.788 3.212 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.569 4.569 8 H 0.075 0.925 9 C 0.012 3.988 10 C -0.113 4.113 11 C -0.030 4.030 12 C -0.122 4.122 13 C -0.118 4.118 14 C 0.048 3.952 15 F -0.115 7.115 16 C -0.110 4.110 17 C -0.121 4.121 18 C 0.356 3.644 19 O -0.400 6.400 20 O -0.321 6.321 21 H 0.070 0.930 22 H 0.013 0.987 23 H 0.005 0.995 24 H 0.088 0.912 25 H 0.092 0.908 26 H 0.178 0.822 27 H 0.192 0.808 28 H 0.181 0.819 29 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges 1.371 -15.337 -0.844 15.421 hybrid contribution 0.083 1.273 -0.766 1.488 sum 1.453 -14.064 -1.610 14.230 Atomic orbital electron populations 1.70104 1.07762 1.27550 1.52299 1.25939 0.95751 1.03178 0.95031 0.85538 0.78300 0.78294 0.79117 1.19725 1.20821 1.18751 1.21596 0.93315 0.92320 1.49647 0.92532 1.18766 0.93806 0.91870 0.94342 1.20814 0.97979 0.90256 1.02225 1.20489 0.94584 0.95458 0.92420 1.21163 0.99044 0.94178 0.97851 1.21690 0.95836 0.95905 0.98374 1.17527 0.98570 0.84378 0.94741 1.91508 1.77720 1.45012 1.97308 1.21428 0.97314 0.93202 0.99048 1.18776 1.05783 0.96817 0.90759 1.20986 0.75118 0.83412 0.84865 1.91066 1.40358 1.21088 1.87469 1.84457 1.77331 1.52704 1.17583 0.92985 0.98744 0.99545 0.91232 0.90818 0.82197 0.80769 0.81949 0.70812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.02 13.29 21.45 0.28 -58.73 15 2 C 0.00 -0.13 5.46 84.65 0.46 0.34 15 3 Si 0.96 45.87 29.54 68.60 2.03 47.89 15 4 H -0.27 -12.63 7.11 99.48 0.71 -11.93 15 5 H -0.28 -13.11 7.11 99.48 0.71 -12.40 15 6 H -0.26 -11.82 7.11 99.48 0.71 -11.11 15 7 C -0.53 -31.53 9.11 25.60 0.23 -31.30 15 8 H 0.06 3.23 7.74 -2.91 -0.02 3.21 15 9 C 0.05 2.71 4.48 29.85 0.13 2.84 15 10 C -0.08 -3.27 4.54 29.85 0.14 -3.14 15 11 C -0.03 -1.02 5.17 -19.60 -0.10 -1.12 15 12 C -0.10 -2.86 9.65 22.22 0.21 -2.64 15 13 C -0.10 -2.23 10.02 22.37 0.22 -2.01 15 14 C 0.07 1.64 7.29 22.34 0.16 1.81 15 15 F -0.14 -3.21 17.26 44.97 0.78 -2.43 15 16 C -0.09 -2.44 9.59 22.58 0.22 -2.22 15 17 C -0.12 -4.00 5.87 -20.10 -0.12 -4.12 15 18 C 0.51 18.06 8.13 70.33 0.57 18.63 15 19 O -0.51 -22.73 12.37 19.90 0.25 -22.49 15 20 O -0.51 -12.89 12.70 -56.14 -0.71 -13.60 15 21 H 0.26 15.50 8.31 -92.71 -0.77 14.73 15 22 H -0.01 -0.35 6.55 -2.39 -0.02 -0.37 15 23 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 15 24 H 0.07 2.75 8.02 -2.38 -0.02 2.73 15 25 H 0.07 3.37 5.96 -2.39 -0.01 3.35 15 26 H 0.16 3.72 8.04 -2.91 -0.02 3.70 15 27 H 0.17 2.63 8.06 -2.91 -0.02 2.60 15 28 H 0.16 3.68 7.62 -2.91 -0.02 3.66 15 29 H 0.43 7.23 9.11 -74.06 -0.67 6.56 15 Total: -1.00 -73.67 263.35 5.27 -68.40 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: 0.52 Total: 3.90 kcal Atomic # 6 Polarization: -25.07 SS G_CDS: 2.14 Total: -22.94 kcal Atomic # 7 Polarization: -59.02 SS G_CDS: 0.28 Total: -58.73 kcal Atomic # 8 Polarization: -35.62 SS G_CDS: -0.47 Total: -36.09 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.78 Total: -2.43 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.89 kcal Total: -73.67 5.27 -68.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260517766.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.207 kcal (2) G-P(sol) polarization free energy of solvation -73.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds