Wall clock time and date at job start Mon Mar 30 2020 05:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99656 * 2 1 4 4 H 1.48501 * 109.47280 * 239.99708 * 3 2 1 5 5 H 1.48496 * 109.47222 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47301 * 119.99981 * 3 2 1 7 7 C 1.37879 * 120.00392 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99646 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99493 * 0.02562 * 7 2 1 10 10 C 1.53009 * 109.46658 * 180.02562 * 9 7 2 11 11 H 1.08991 * 110.83096 * 51.29071 * 10 9 7 12 12 C 1.54716 * 110.93435 * 287.54849 * 10 9 7 13 13 O 1.43775 * 102.77450 * 216.59433 * 12 10 9 14 14 C 1.36133 * 109.30318 * 27.56793 * 13 12 10 15 15 C 1.39293 * 129.88327 * 160.99432 * 14 13 12 16 16 C 1.37937 * 120.26540 * 179.35600 * 15 14 13 17 17 C 1.38274 * 120.36550 * 0.27209 * 16 15 14 18 18 C 1.38471 * 119.75062 * 0.22768 * 17 16 15 19 19 Cl 1.73592 * 120.02528 * 179.90760 * 18 17 16 20 20 C 1.37856 * 119.95165 * 359.92611 * 18 17 16 21 21 H 0.96995 * 120.00439 * 359.97438 * 1 2 3 22 22 H 1.08991 * 109.46834 * 60.00496 * 9 7 2 23 23 H 1.08992 * 109.47114 * 299.99560 * 9 7 2 24 24 H 1.09002 * 110.74966 * 334.91786 * 12 10 9 25 25 H 1.08995 * 110.75077 * 98.27288 * 12 10 9 26 26 H 1.08002 * 119.87087 * 359.64088 * 15 14 13 27 27 H 1.08002 * 119.81855 * 180.29550 * 16 15 14 28 28 H 1.07999 * 120.12415 * 180.24580 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 1 2.9809 -3.5423 0.7972 12 6 2.9369 -3.7997 -1.3754 13 8 3.0643 -5.2238 -1.5263 14 6 2.0732 -5.8409 -0.8261 15 6 1.5701 -7.1346 -0.9420 16 6 0.5573 -7.5638 -0.1097 17 6 0.0280 -6.7132 0.8433 18 6 0.5151 -5.4221 0.9585 19 17 -0.1458 -4.3474 2.1508 20 6 1.5251 -4.9907 0.1252 21 1 -0.4850 0.8400 0.0004 22 1 0.6249 -2.5570 -0.8897 23 1 0.6242 -2.5567 0.8903 24 1 2.3119 -3.3820 -2.1647 25 1 3.9172 -3.3232 -1.3646 26 1 1.9777 -7.8059 -1.6834 27 1 0.1759 -8.5700 -0.2026 28 1 -0.7622 -7.0546 1.4956 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260517967.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:52 Heat of formation + Delta-G solvation = -23.136201 kcal Electronic energy + Delta-G solvation = -14520.070786 eV Core-core repulsion = 11947.907970 eV Total energy + Delta-G solvation = -2572.162816 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.76193 -37.32130 -35.87332 -34.05983 -32.03390 -29.77794 -29.36950 -26.65485 -23.56886 -22.58622 -21.88069 -19.85204 -17.17160 -16.60882 -16.14473 -15.47383 -15.21601 -14.43264 -14.29343 -13.39527 -13.17880 -12.97523 -12.58824 -12.22870 -11.78031 -11.35122 -11.29366 -10.99609 -10.73998 -10.64012 -10.56199 -10.33846 -9.93946 -9.51986 -9.05061 -8.36802 -8.33360 -7.85451 -6.02789 -4.06251 1.41245 1.51258 2.57642 3.30801 3.36011 3.37666 3.61118 3.89695 4.42195 4.95178 5.07687 5.18750 5.32554 5.42601 5.53498 5.61226 5.72723 5.94252 6.25308 6.40635 6.45994 6.48782 6.53145 6.69456 6.85006 7.45009 7.62327 7.74347 7.95361 8.33162 8.98974 9.57457 11.07888 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.030691 B = 0.008159 C = 0.006734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.110924 B = 3430.884793 C = 4157.086249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.071 4.071 11 H 0.089 0.911 12 C 0.062 3.938 13 O -0.313 6.313 14 C 0.117 3.883 15 C -0.146 4.146 16 C -0.085 4.085 17 C -0.150 4.150 18 C 0.016 3.984 19 Cl -0.053 7.053 20 C -0.147 4.147 21 H 0.262 0.738 22 H 0.018 0.982 23 H 0.046 0.954 24 H 0.083 0.917 25 H 0.104 0.896 26 H 0.127 0.873 27 H 0.134 0.866 28 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.261 -12.511 0.304 12.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.089 4.089 11 H 0.107 0.893 12 C -0.012 4.012 13 O -0.227 6.227 14 C 0.071 3.929 15 C -0.165 4.165 16 C -0.104 4.104 17 C -0.169 4.169 18 C -0.011 4.011 19 Cl -0.024 7.024 20 C -0.148 4.148 21 H 0.071 0.929 22 H 0.036 0.964 23 H 0.064 0.936 24 H 0.101 0.899 25 H 0.122 0.878 26 H 0.145 0.855 27 H 0.152 0.848 28 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.227 -12.359 0.268 12.423 hybrid contribution 0.328 1.256 0.156 1.307 sum 1.555 -11.104 0.424 11.220 Atomic orbital electron populations 1.69952 1.06008 1.26765 1.50154 1.24975 0.94793 0.99100 0.95192 0.86691 0.79622 0.83270 0.78623 1.20236 1.21298 1.20231 1.21135 0.92837 0.90818 1.51513 0.92714 1.19300 0.93286 0.89430 0.99176 1.21690 0.98381 0.92437 0.96378 0.89320 1.24032 1.02506 0.76503 0.98154 1.86760 1.45720 1.21555 1.68651 1.19519 0.88801 0.93467 0.91137 1.20247 0.99353 0.93967 1.02909 1.20671 0.95743 0.99356 0.94590 1.20899 1.02566 0.91985 1.01421 1.20168 0.95870 0.91533 0.93547 1.98388 1.84612 1.64212 1.55201 1.21001 0.98279 0.98651 0.96885 0.92876 0.96407 0.93555 0.89906 0.87819 0.85459 0.84829 0.84962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.23 13.29 55.43 0.74 -25.50 15 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 15 3 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 15 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 15 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 7 C -0.52 -14.23 8.85 -34.44 -0.30 -14.53 15 8 H 0.05 1.42 7.74 -52.49 -0.41 1.01 15 9 C 0.02 0.63 4.34 -27.88 -0.12 0.51 15 10 C -0.07 -1.47 2.96 -90.40 -0.27 -1.74 15 11 H 0.09 1.85 8.14 -51.93 -0.42 1.43 15 12 C 0.06 1.16 7.29 38.06 0.28 1.44 15 13 O -0.31 -5.73 11.10 -20.16 -0.22 -5.96 15 14 C 0.12 2.08 7.04 -38.96 -0.27 1.80 15 15 C -0.15 -2.11 10.06 -39.30 -0.40 -2.50 15 16 C -0.09 -1.09 10.01 -39.68 -0.40 -1.49 15 17 C -0.15 -2.16 9.85 -39.48 -0.39 -2.55 15 18 C 0.02 0.28 6.29 -39.64 -0.25 0.03 15 19 Cl -0.05 -0.99 26.26 -51.86 -1.36 -2.36 15 20 C -0.15 -2.82 5.61 -104.07 -0.58 -3.41 15 21 H 0.26 7.33 8.31 -40.82 -0.34 6.99 15 22 H 0.02 0.48 7.94 -51.93 -0.41 0.07 15 23 H 0.05 1.22 5.43 -51.93 -0.28 0.93 15 24 H 0.08 1.60 7.78 -51.93 -0.40 1.19 15 25 H 0.10 1.75 8.14 -51.93 -0.42 1.33 15 26 H 0.13 1.52 8.06 -52.49 -0.42 1.09 15 27 H 0.13 1.21 8.06 -52.49 -0.42 0.79 15 28 H 0.13 1.58 8.06 -52.49 -0.42 1.16 15 LS Contribution 256.92 15.07 3.87 3.87 Total: -1.00 -29.61 256.92 -7.55 -37.17 By element: Atomic # 1 Polarization: 0.15 SS G_CDS: -2.75 Total: -2.60 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: -2.80 Total: -20.83 kcal Atomic # 7 Polarization: -26.23 SS G_CDS: 0.74 Total: -25.50 kcal Atomic # 8 Polarization: -5.73 SS G_CDS: -0.22 Total: -5.96 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.36 Total: -2.36 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.61 -7.55 -37.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260517967.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.030 kcal (2) G-P(sol) polarization free energy of solvation -29.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds