Wall clock time and date at job start Mon Mar 30 2020 05:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99656 * 2 1 4 4 H 1.48501 * 109.47280 * 239.99708 * 3 2 1 5 5 H 1.48496 * 109.47222 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47301 * 119.99981 * 3 2 1 7 7 C 1.37879 * 120.00392 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99646 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99493 * 0.02562 * 7 2 1 10 10 C 1.53009 * 109.46658 * 180.02562 * 9 7 2 11 11 H 1.08991 * 110.83096 * 51.29071 * 10 9 7 12 12 C 1.54716 * 110.93435 * 287.54849 * 10 9 7 13 13 O 1.43775 * 102.77450 * 216.59433 * 12 10 9 14 14 C 1.36133 * 109.30318 * 27.56793 * 13 12 10 15 15 C 1.39293 * 129.88327 * 160.99432 * 14 13 12 16 16 C 1.37937 * 120.26540 * 179.35600 * 15 14 13 17 17 C 1.38274 * 120.36550 * 0.27209 * 16 15 14 18 18 C 1.38471 * 119.75062 * 0.22768 * 17 16 15 19 19 Cl 1.73592 * 120.02528 * 179.90760 * 18 17 16 20 20 C 1.37856 * 119.95165 * 359.92611 * 18 17 16 21 21 H 0.96995 * 120.00439 * 359.97438 * 1 2 3 22 22 H 1.08991 * 109.46834 * 60.00496 * 9 7 2 23 23 H 1.08992 * 109.47114 * 299.99560 * 9 7 2 24 24 H 1.09002 * 110.74966 * 334.91786 * 12 10 9 25 25 H 1.08995 * 110.75077 * 98.27288 * 12 10 9 26 26 H 1.08002 * 119.87087 * 359.64088 * 15 14 13 27 27 H 1.08002 * 119.81855 * 180.29550 * 16 15 14 28 28 H 1.07999 * 120.12415 * 180.24580 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 1 2.9809 -3.5423 0.7972 12 6 2.9369 -3.7997 -1.3754 13 8 3.0643 -5.2238 -1.5263 14 6 2.0732 -5.8409 -0.8261 15 6 1.5701 -7.1346 -0.9420 16 6 0.5573 -7.5638 -0.1097 17 6 0.0280 -6.7132 0.8433 18 6 0.5151 -5.4221 0.9585 19 17 -0.1458 -4.3474 2.1508 20 6 1.5251 -4.9907 0.1252 21 1 -0.4850 0.8400 0.0004 22 1 0.6249 -2.5570 -0.8897 23 1 0.6242 -2.5567 0.8903 24 1 2.3119 -3.3820 -2.1647 25 1 3.9172 -3.3232 -1.3646 26 1 1.9777 -7.8059 -1.6834 27 1 0.1759 -8.5700 -0.2026 28 1 -0.7622 -7.0546 1.4956 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260517967.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:51 Heat of formation + Delta-G solvation = -40.097785 kcal Electronic energy + Delta-G solvation = -14520.806296 eV Core-core repulsion = 11947.907970 eV Total energy + Delta-G solvation = -2572.898326 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.12967 -38.60733 -37.23384 -35.89832 -33.88843 -31.05582 -30.79093 -28.47420 -25.36412 -24.00626 -23.17799 -21.45433 -18.71962 -18.35205 -17.56260 -16.93015 -16.65456 -16.26471 -15.60685 -14.85631 -14.66093 -14.34270 -14.24485 -13.96793 -13.36018 -12.94797 -12.75421 -12.67402 -12.52590 -12.23778 -12.05804 -11.83465 -11.64162 -11.35701 -10.99768 -10.46367 -9.66171 -9.17300 -8.16681 -6.27136 0.16756 0.27807 1.23224 1.41120 1.43166 1.50663 2.29296 2.41582 2.65633 3.16829 3.59895 3.70974 3.98147 4.14674 4.19023 4.41955 4.45906 4.56208 4.79085 4.90432 4.97310 5.23913 5.29346 5.34148 5.50646 5.55996 5.68902 5.85739 6.11829 6.23305 6.87561 7.40869 8.94477 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.030691 B = 0.008159 C = 0.006734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.110924 B = 3430.884793 C = 4157.086249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.006 3.994 3 Si 0.959 3.041 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.269 1.269 7 C -0.538 4.538 8 H 0.063 0.937 9 C 0.034 3.966 10 C -0.069 4.069 11 H 0.081 0.919 12 C 0.069 3.931 13 O -0.314 6.314 14 C 0.093 3.907 15 C -0.137 4.137 16 C -0.065 4.065 17 C -0.144 4.144 18 C -0.006 4.006 19 Cl -0.074 7.074 20 C -0.180 4.180 21 H 0.262 0.738 22 H -0.016 1.016 23 H 0.031 0.969 24 H 0.070 0.930 25 H 0.121 0.879 26 H 0.160 0.840 27 H 0.186 0.814 28 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.862 -14.387 -0.069 14.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.193 4.193 3 Si 0.784 3.216 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.576 4.576 8 H 0.081 0.919 9 C -0.003 4.003 10 C -0.087 4.087 11 H 0.099 0.901 12 C -0.005 4.005 13 O -0.229 6.229 14 C 0.047 3.953 15 C -0.155 4.155 16 C -0.083 4.083 17 C -0.162 4.162 18 C -0.032 4.032 19 Cl -0.045 7.045 20 C -0.182 4.182 21 H 0.071 0.929 22 H 0.003 0.997 23 H 0.049 0.951 24 H 0.088 0.912 25 H 0.139 0.861 26 H 0.177 0.823 27 H 0.203 0.797 28 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 1.843 -14.253 -0.105 14.372 hybrid contribution 0.077 1.689 0.274 1.713 sum 1.920 -12.564 0.170 12.711 Atomic orbital electron populations 1.70097 1.07734 1.27623 1.51511 1.25867 0.95603 1.02945 0.94849 0.85597 0.78320 0.78558 0.79159 1.19011 1.21234 1.19404 1.21573 0.93454 0.91851 1.50676 0.91891 1.19086 0.93593 0.90911 0.96721 1.21446 0.97603 0.92196 0.97481 0.90064 1.23887 1.02845 0.77402 0.96395 1.86732 1.46314 1.20813 1.69011 1.19905 0.89340 0.94785 0.91223 1.20770 0.98826 0.92681 1.03228 1.21277 0.93863 1.00935 0.92212 1.21338 1.02558 0.90497 1.01834 1.20504 0.96417 0.92728 0.93596 1.98374 1.84849 1.65324 1.56000 1.20958 1.00024 0.98168 0.99007 0.92931 0.99724 0.95116 0.91169 0.86134 0.82281 0.79723 0.82248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.35 13.29 21.45 0.28 -56.07 15 2 C 0.01 0.31 5.46 84.66 0.46 0.77 15 3 Si 0.96 43.89 29.54 68.60 2.03 45.91 15 4 H -0.27 -11.57 7.11 99.48 0.71 -10.87 15 5 H -0.29 -13.00 7.11 99.48 0.71 -12.29 15 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 15 7 C -0.54 -29.82 8.85 25.60 0.23 -29.59 15 8 H 0.06 3.30 7.74 -2.91 -0.02 3.27 15 9 C 0.03 1.78 4.34 29.85 0.13 1.91 15 10 C -0.07 -2.96 2.96 -10.65 -0.03 -3.00 15 11 H 0.08 3.51 8.14 -2.39 -0.02 3.49 15 12 C 0.07 2.62 7.29 72.57 0.53 3.15 15 13 O -0.31 -11.31 11.10 -95.07 -1.06 -12.36 15 14 C 0.09 3.19 7.04 22.67 0.16 3.35 15 15 C -0.14 -3.44 10.06 22.45 0.23 -3.21 15 16 C -0.07 -1.36 10.01 22.21 0.22 -1.14 15 17 C -0.14 -3.73 9.85 22.33 0.22 -3.51 15 18 C -0.01 -0.20 6.29 22.23 0.14 -0.06 15 19 Cl -0.07 -2.84 26.26 -2.72 -0.07 -2.91 15 20 C -0.18 -6.97 5.61 -19.50 -0.11 -7.08 15 21 H 0.26 15.04 8.31 -92.71 -0.77 14.27 15 22 H -0.02 -0.91 7.94 -2.39 -0.02 -0.93 15 23 H 0.03 1.69 5.43 -2.39 -0.01 1.68 15 24 H 0.07 2.81 7.78 -2.39 -0.02 2.79 15 25 H 0.12 4.07 8.14 -2.39 -0.02 4.05 15 26 H 0.16 3.00 8.06 -2.91 -0.02 2.97 15 27 H 0.19 2.04 8.06 -2.91 -0.02 2.02 15 28 H 0.16 3.23 8.06 -2.91 -0.02 3.20 15 Total: -1.00 -65.89 256.92 4.53 -61.36 By element: Atomic # 1 Polarization: 1.30 SS G_CDS: 1.17 Total: 2.47 kcal Atomic # 6 Polarization: -40.57 SS G_CDS: 2.17 Total: -38.40 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: 0.28 Total: -56.07 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: -1.06 Total: -12.36 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 17 Polarization: -2.84 SS G_CDS: -0.07 Total: -2.91 kcal Total: -65.89 4.53 -61.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260517967.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.262 kcal (2) G-P(sol) polarization free energy of solvation -65.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds