Wall clock time and date at job start Mon Mar 30 2020 05:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.96373 * 2 1 4 4 S 1.83292 * 111.09679 * 124.17159 * 2 1 3 5 5 C 1.77435 * 96.61379 * 93.10711 * 4 2 1 6 6 C 1.38779 * 130.55015 * 195.49046 * 5 4 2 7 7 C 1.38245 * 120.14842 * 179.34304 * 6 5 4 8 8 F 1.35096 * 120.38187 * 180.02562 * 7 6 5 9 9 C 1.38552 * 119.23675 * 0.02562 * 7 6 5 10 10 C 1.37655 * 120.51225 * 0.17428 * 9 7 6 11 11 C 1.38914 * 108.28236 * 15.18579 * 5 4 2 12 12 C 1.50887 * 115.35312 * 0.75818 * 11 5 4 13 13 H 1.09000 * 109.27951 * 99.63415 * 12 11 5 14 14 C 1.50709 * 109.21197 * 219.11196 * 12 11 5 15 15 H 1.07998 * 119.99829 * 36.14371 * 14 12 11 16 16 C 1.37875 * 119.99941 * 216.14137 * 14 12 11 17 17 N 1.31511 * 119.99866 * 5.10044 * 16 14 12 18 18 Si 1.86800 * 119.99866 * 185.09638 * 16 14 12 19 19 H 1.48496 * 109.47148 * 0.02562 * 18 16 14 20 20 H 1.48491 * 109.47202 * 120.00394 * 18 16 14 21 21 H 1.48505 * 109.46919 * 240.00065 * 18 16 14 22 22 H 1.09001 * 109.47349 * 178.14419 * 1 2 3 23 23 H 1.08995 * 109.47880 * 298.15350 * 1 2 3 24 24 H 1.09009 * 109.47282 * 58.15118 * 1 2 3 25 25 H 1.08010 * 119.92577 * 359.32197 * 6 5 4 26 26 H 1.07994 * 119.74225 * 180.18042 * 9 7 6 27 27 H 1.08002 * 119.44956 * 179.97438 * 10 9 7 28 28 H 0.97001 * 119.99756 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9200 1.0179 0.0000 4 16 2.1897 -0.9605 1.4148 5 6 2.3524 -2.5044 0.5556 6 6 2.5302 -3.7925 1.0406 7 6 2.6188 -4.8582 0.1645 8 9 2.7913 -6.1141 0.6315 9 6 2.5286 -4.6234 -1.1980 10 6 2.3563 -3.3444 -1.6769 11 6 2.2665 -2.2552 -0.8083 12 6 2.0849 -0.8068 -1.1903 13 1 3.0466 -0.3905 -1.4902 14 6 1.1215 -0.7157 -2.3456 15 1 0.2833 -1.3942 -2.4046 16 6 1.3101 0.2340 -3.3272 17 7 2.3837 0.9933 -3.3099 18 14 0.0406 0.4420 -4.6817 19 1 -1.0665 -0.5260 -4.4754 20 1 -0.4988 1.8250 -4.6465 21 1 0.6777 0.1926 -5.9997 22 1 -0.3634 -1.0271 -0.0333 23 1 -0.3635 0.4848 0.9060 24 1 -0.3634 0.5423 -0.8730 25 1 2.5998 -3.9627 2.1049 26 1 2.5938 -5.4503 -1.8896 27 1 2.2886 -3.1810 -2.7424 28 1 2.5161 1.6617 -4.0003 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260531214.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:15 Heat of formation + Delta-G solvation = -42.383602 kcal Electronic energy + Delta-G solvation = -14529.474428 eV Core-core repulsion = 11970.893478 eV Total energy + Delta-G solvation = -2558.580950 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.052 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.86899 -40.21083 -36.84423 -33.89821 -31.97139 -31.43254 -28.28867 -26.27354 -24.06954 -23.18374 -21.48482 -19.11168 -18.29579 -17.53051 -16.86614 -16.57641 -16.56140 -16.05191 -15.55100 -14.68058 -14.67292 -14.43784 -14.01878 -13.58009 -13.38448 -13.12382 -12.93895 -12.77994 -12.44184 -12.05310 -11.92932 -11.45045 -11.34622 -10.82786 -10.70071 -10.48951 -9.56690 -8.39133 -8.16139 -6.26412 0.12276 0.25087 0.74661 1.34867 1.45302 1.48186 1.56867 2.40514 2.60005 3.13636 3.31417 3.80174 3.96640 4.11311 4.18237 4.31514 4.42631 4.67816 4.75880 5.03625 5.05615 5.12138 5.22996 5.30323 5.41169 5.49673 5.59666 5.73552 5.91850 6.18209 6.82984 7.39219 8.90754 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.027160 B = 0.009168 C = 0.007487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.694097 B = 3053.375724 C = 3738.856091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.026 4.026 3 H 0.095 0.905 4 S -0.189 6.189 5 C -0.080 4.080 6 C -0.128 4.128 7 C 0.091 3.909 8 F -0.137 7.137 9 C -0.146 4.146 10 C -0.070 4.070 11 C -0.085 4.085 12 C 0.059 3.941 13 H 0.054 0.946 14 C -0.499 4.499 15 H 0.059 0.941 16 C 0.026 3.974 17 N -0.921 5.921 18 Si 0.950 3.050 19 H -0.264 1.264 20 H -0.281 1.281 21 H -0.284 1.284 22 H 0.045 0.955 23 H 0.061 0.939 24 H 0.067 0.933 25 H 0.148 0.852 26 H 0.161 0.839 27 H 0.133 0.867 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.611 -6.553 4.550 8.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.155 4.155 3 H 0.113 0.887 4 S 0.055 5.945 5 C -0.193 4.193 6 C -0.153 4.153 7 C 0.070 3.930 8 F -0.116 7.116 9 C -0.167 4.167 10 C -0.090 4.090 11 C -0.090 4.090 12 C 0.039 3.961 13 H 0.072 0.928 14 C -0.538 4.538 15 H 0.077 0.923 16 C -0.174 4.174 17 N -0.560 5.560 18 Si 0.775 3.225 19 H -0.188 1.188 20 H -0.207 1.207 21 H -0.210 1.210 22 H 0.064 0.936 23 H 0.080 0.920 24 H 0.086 0.914 25 H 0.165 0.835 26 H 0.179 0.821 27 H 0.151 0.849 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.274 -5.971 5.744 8.383 hybrid contribution -0.488 -0.112 -1.932 1.996 sum -1.762 -6.083 3.812 7.392 Atomic orbital electron populations 1.21602 0.91686 1.01561 1.01285 1.24351 0.99863 0.99943 0.91313 0.88730 1.85400 1.81875 1.04445 1.22799 1.21935 1.05010 0.96218 0.96099 1.20321 1.05135 0.89165 1.00681 1.17279 1.04402 0.78864 0.92461 1.91470 1.93180 1.37642 1.89308 1.21129 1.03532 0.98199 0.93846 1.20861 0.97260 0.90367 1.00542 1.21679 0.97578 0.97669 0.92101 1.18392 0.98296 0.86098 0.93306 0.92775 1.20978 1.10220 1.16799 1.05773 0.92263 1.25630 0.96640 0.95523 0.99607 1.70009 1.27410 1.22877 1.35666 0.85620 0.79650 0.78128 0.79054 1.18792 1.20695 1.20974 0.93600 0.91980 0.91415 0.83451 0.82130 0.84893 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.88 8.38 71.98 0.60 -3.27 15 2 C -0.03 -1.10 3.88 30.98 0.12 -0.98 15 3 H 0.09 4.09 8.14 -2.38 -0.02 4.07 15 4 S -0.19 -7.23 22.56 -56.49 -1.27 -8.50 15 5 C -0.08 -3.10 6.48 22.56 0.15 -2.95 15 6 C -0.13 -4.30 10.04 22.40 0.22 -4.07 15 7 C 0.09 2.87 7.32 22.35 0.16 3.03 15 8 F -0.14 -4.03 17.28 44.97 0.78 -3.25 15 9 C -0.15 -4.56 9.98 22.21 0.22 -4.34 15 10 C -0.07 -2.62 9.45 22.46 0.21 -2.41 15 11 C -0.09 -3.57 5.56 -19.31 -0.11 -3.68 15 12 C 0.06 2.73 2.59 -11.84 -0.03 2.70 15 13 H 0.05 2.92 7.21 -2.39 -0.02 2.90 15 14 C -0.50 -24.24 5.57 25.60 0.14 -24.10 15 15 H 0.06 2.88 7.82 -2.91 -0.02 2.86 15 16 C 0.03 1.31 5.45 84.65 0.46 1.77 15 17 N -0.92 -49.45 12.75 21.45 0.27 -49.18 15 18 Si 0.95 39.92 29.54 68.60 2.03 41.95 15 19 H -0.26 -10.73 7.11 99.48 0.71 -10.02 15 20 H -0.28 -11.73 7.11 99.48 0.71 -11.03 15 21 H -0.28 -11.92 7.11 99.48 0.71 -11.22 15 22 H 0.04 1.76 8.14 -2.39 -0.02 1.74 15 23 H 0.06 2.01 8.14 -2.39 -0.02 1.99 15 24 H 0.07 2.70 7.25 -2.38 -0.02 2.68 15 25 H 0.15 4.27 8.06 -2.91 -0.02 4.25 15 26 H 0.16 3.93 8.06 -2.91 -0.02 3.90 15 27 H 0.13 4.98 7.84 -2.91 -0.02 4.96 15 28 H 0.27 13.59 8.31 -92.71 -0.77 12.82 15 Total: -1.00 -52.50 257.12 5.13 -47.37 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: 1.16 Total: 9.91 kcal Atomic # 6 Polarization: -40.46 SS G_CDS: 2.16 Total: -38.30 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: 0.27 Total: -49.18 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.78 Total: -3.25 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.95 kcal Atomic # 16 Polarization: -7.23 SS G_CDS: -1.27 Total: -8.50 kcal Total: -52.50 5.13 -47.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260531214.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.986 kcal (2) G-P(sol) polarization free energy of solvation -52.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds