Wall clock time and date at job start Mon Mar 30 2020 05:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.99906 * 2 1 4 4 S 1.83290 * 111.09805 * 235.84319 * 2 1 3 5 5 C 1.77441 * 96.62445 * 266.86912 * 4 2 1 6 6 C 1.38789 * 130.55253 * 164.71860 * 5 4 2 7 7 C 1.38249 * 120.14440 * 180.64003 * 6 5 4 8 8 F 1.35096 * 120.37258 * 179.97438 * 7 6 5 9 9 C 1.38544 * 119.24132 * 359.97438 * 7 6 5 10 10 C 1.37655 * 120.51479 * 359.87721 * 9 7 6 11 11 C 1.38915 * 108.28574 * 345.00161 * 5 4 2 12 12 C 1.50890 * 115.34223 * 358.94916 * 11 5 4 13 13 H 1.08999 * 109.28088 * 141.19915 * 12 11 5 14 14 C 1.50702 * 109.28523 * 260.73194 * 12 11 5 15 15 H 1.07996 * 119.99920 * 118.55040 * 14 12 11 16 16 C 1.37878 * 119.99749 * 298.55028 * 14 12 11 17 17 N 1.31521 * 120.00086 * 0.02562 * 16 14 12 18 18 Si 1.86804 * 119.99763 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47221 * 89.99907 * 18 16 14 20 20 H 1.48503 * 109.46891 * 209.99933 * 18 16 14 21 21 H 1.48494 * 109.46794 * 329.99553 * 18 16 14 22 22 H 1.09001 * 109.47510 * 295.84699 * 1 2 3 23 23 H 1.09005 * 109.46617 * 55.84644 * 1 2 3 24 24 H 1.09005 * 109.47440 * 175.83964 * 1 2 3 25 25 H 1.08003 * 119.92652 * 0.63810 * 6 5 4 26 26 H 1.08004 * 119.74016 * 179.86025 * 9 7 6 27 27 H 1.08010 * 119.45548 * 179.97438 * 10 9 7 28 28 H 0.96997 * 119.99513 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9206 1.0176 0.0000 4 16 2.1898 -0.9601 -1.4151 5 6 2.3533 -2.5042 -0.5563 6 6 2.5353 -3.7917 -1.0415 7 6 2.6239 -4.8577 -0.1657 8 9 2.8005 -6.1129 -0.6330 9 6 2.5296 -4.6239 1.1967 10 6 2.3521 -3.3457 1.6758 11 6 2.2634 -2.2561 0.8076 12 6 2.0849 -0.8074 1.1901 13 1 1.3897 -0.7391 2.0268 14 6 3.4163 -0.2335 1.6013 15 1 3.8431 0.5902 1.0485 16 6 4.0894 -0.7602 2.6832 17 7 3.5697 -1.7637 3.3561 18 14 5.7394 -0.0484 3.1934 19 1 5.5246 1.0453 4.1748 20 1 6.5678 -1.1138 3.8130 21 1 6.4374 0.4891 1.9981 22 1 -0.3634 0.4480 0.9248 23 1 -0.3633 0.5770 -0.8505 24 1 -0.3634 -1.0250 -0.0746 25 1 2.6078 -3.9612 -2.1057 26 1 2.5955 -5.4510 1.8880 27 1 2.2803 -3.1831 2.7412 28 1 4.0431 -2.1339 4.1174 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260531236.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:17 Heat of formation + Delta-G solvation = -26.788789 kcal Electronic energy + Delta-G solvation = -14715.304748 eV Core-core repulsion = 12157.400039 eV Total energy + Delta-G solvation = -2557.904708 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.052 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.24239 -38.40932 -34.98154 -32.39300 -30.13580 -29.62342 -27.08150 -23.71839 -22.47249 -21.56368 -19.88700 -17.34836 -16.78534 -15.82880 -15.07757 -14.95225 -14.70025 -14.60432 -13.59307 -13.04801 -13.00266 -12.67644 -12.18384 -12.07186 -11.84028 -11.59355 -11.12878 -10.95202 -10.77827 -10.62751 -10.24920 -9.79838 -9.51892 -9.20484 -8.90557 -8.61289 -7.69541 -6.62751 -6.19795 -4.35120 1.94967 2.12207 2.41598 3.05403 3.19251 3.26671 3.30775 4.23825 4.47595 5.04400 5.07072 5.48498 5.57868 5.62830 5.73832 5.86319 6.03210 6.15858 6.33846 6.42073 6.56473 6.65667 6.81592 7.03290 7.18001 7.28542 7.56141 7.69440 7.84962 7.96401 8.66376 9.30644 10.76057 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.019481 B = 0.012187 C = 0.008814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.932092 B = 2296.939262 C = 3176.119166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.040 4.040 3 H 0.110 0.890 4 S -0.180 6.180 5 C -0.072 4.072 6 C -0.142 4.142 7 C 0.076 3.924 8 F -0.153 7.153 9 C -0.173 4.173 10 C -0.037 4.037 11 C -0.044 4.044 12 C 0.072 3.928 13 H 0.056 0.944 14 C -0.502 4.502 15 H 0.067 0.933 16 C 0.064 3.936 17 N -0.883 5.883 18 Si 0.901 3.099 19 H -0.278 1.278 20 H -0.285 1.285 21 H -0.272 1.272 22 H 0.065 0.935 23 H 0.054 0.946 24 H 0.057 0.943 25 H 0.120 0.880 26 H 0.121 0.879 27 H 0.167 0.833 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.103 -0.832 -3.315 5.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.168 4.168 3 H 0.128 0.872 4 S 0.062 5.938 5 C -0.184 4.184 6 C -0.167 4.167 7 C 0.055 3.945 8 F -0.132 7.132 9 C -0.194 4.194 10 C -0.058 4.058 11 C -0.050 4.050 12 C 0.053 3.947 13 H 0.073 0.927 14 C -0.539 4.539 15 H 0.086 0.914 16 C -0.138 4.138 17 N -0.520 5.520 18 Si 0.729 3.271 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.197 1.197 22 H 0.084 0.916 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.138 0.862 26 H 0.139 0.861 27 H 0.184 0.816 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.804 -0.499 -4.416 5.849 hybrid contribution 1.025 -0.502 1.367 1.781 sum -2.779 -1.002 -3.048 4.244 Atomic orbital electron populations 1.21962 0.93818 1.02137 1.01516 1.24211 0.97012 1.01387 0.94213 0.87160 1.85322 1.82385 1.04887 1.21201 1.21691 1.05315 0.94850 0.96550 1.19917 1.07848 0.90049 0.98869 1.17312 1.06111 0.78454 0.92645 1.91402 1.93505 1.38752 1.89505 1.20976 1.06846 0.98771 0.92804 1.21585 0.92909 0.88613 1.02707 1.21481 0.95988 0.97001 0.90483 1.18362 0.98007 0.85823 0.92471 0.92669 1.21078 1.03835 1.16435 1.12555 0.91449 1.24973 0.98246 0.94610 0.96003 1.69691 1.38875 1.23851 1.19567 0.86415 0.83087 0.78766 0.78854 1.20406 1.21025 1.19675 0.91630 0.92721 0.92436 0.86162 0.86122 0.81633 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.30 37.16 0.35 -1.82 15 2 C -0.04 -0.77 3.49 -26.13 -0.09 -0.86 15 3 H 0.11 2.08 7.71 -51.93 -0.40 1.68 15 4 S -0.18 -3.65 22.53 -107.50 -2.42 -6.07 15 5 C -0.07 -1.57 6.48 -39.13 -0.25 -1.82 15 6 C -0.14 -2.91 10.04 -39.37 -0.40 -3.30 15 7 C 0.08 1.52 7.32 -39.46 -0.29 1.23 15 8 F -0.15 -2.91 17.28 2.25 0.04 -2.87 15 9 C -0.17 -3.51 9.98 -39.68 -0.40 -3.91 15 10 C -0.04 -0.84 8.47 -39.28 -0.33 -1.17 15 11 C -0.04 -1.01 4.97 -103.77 -0.52 -1.52 15 12 C 0.07 1.66 2.06 -92.23 -0.19 1.47 15 13 H 0.06 1.32 7.92 -51.93 -0.41 0.91 15 14 C -0.50 -12.65 8.41 -34.44 -0.29 -12.94 15 15 H 0.07 1.70 7.55 -52.49 -0.40 1.30 15 16 C 0.06 1.62 5.31 -17.82 -0.09 1.53 15 17 N -0.88 -22.44 9.31 55.43 0.52 -21.92 15 18 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 15 19 H -0.28 -6.14 7.11 56.52 0.40 -5.74 15 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 15 22 H 0.06 0.97 8.14 -51.93 -0.42 0.55 15 23 H 0.05 0.76 8.14 -51.93 -0.42 0.34 15 24 H 0.06 0.95 8.14 -51.93 -0.42 0.53 15 25 H 0.12 2.21 8.06 -52.48 -0.42 1.79 15 26 H 0.12 2.15 8.06 -52.48 -0.42 1.73 15 27 H 0.17 3.85 5.88 -52.48 -0.31 3.54 15 28 H 0.27 6.50 8.31 -40.82 -0.34 6.16 15 LS Contribution 253.72 15.07 3.82 3.82 Total: -1.00 -25.63 253.72 -8.33 -33.96 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -2.76 Total: 0.98 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: -2.50 Total: -23.12 kcal Atomic # 7 Polarization: -22.44 SS G_CDS: 0.52 Total: -21.92 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.04 Total: -2.87 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -2.42 Total: -6.07 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -25.63 -8.33 -33.96 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260531236.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.168 kcal (2) G-P(sol) polarization free energy of solvation -25.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds