Wall clock time and date at job start Mon Mar 30 2020 05:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 110.99708 * 2 1 4 4 S 1.83291 * 111.10142 * 235.84014 * 2 1 3 5 5 C 1.77440 * 96.61905 * 217.21792 * 4 2 1 6 6 C 1.38780 * 130.54553 * 195.22256 * 5 4 2 7 7 C 1.38247 * 120.14285 * 179.65471 * 6 5 4 8 8 F 1.35099 * 120.37697 * 179.90890 * 7 6 5 9 9 C 1.38551 * 119.24130 * 359.88922 * 7 6 5 10 10 C 1.37661 * 120.51198 * 0.17656 * 9 7 6 11 11 C 1.38904 * 108.28317 * 15.30383 * 5 4 2 12 12 C 1.50879 * 115.35773 * 0.53572 * 11 5 4 13 13 H 1.09004 * 109.33347 * 219.23917 * 12 11 5 14 14 C 1.50701 * 109.10099 * 99.78991 * 12 11 5 15 15 H 1.07996 * 120.00101 * 303.35792 * 14 12 11 16 16 C 1.37878 * 119.99819 * 123.35752 * 14 12 11 17 17 N 1.31513 * 120.00176 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 120.00053 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.46974 * 89.99599 * 18 16 14 20 20 H 1.48497 * 109.47338 * 209.99516 * 18 16 14 21 21 H 1.48498 * 109.46948 * 330.00183 * 18 16 14 22 22 H 1.08996 * 109.47371 * 177.39078 * 1 2 3 23 23 H 1.09003 * 109.47408 * 297.38889 * 1 2 3 24 24 H 1.08998 * 109.47294 * 57.39212 * 1 2 3 25 25 H 1.08002 * 119.93291 * 359.62776 * 6 5 4 26 26 H 1.07999 * 119.74330 * 180.15275 * 9 7 6 27 27 H 1.08000 * 119.45817 * 180.02562 * 10 9 7 28 28 H 0.96997 * 120.00290 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9205 1.0176 0.0000 4 16 2.1898 -0.9602 -1.4150 5 6 3.5730 -1.6657 -0.5561 6 6 4.7092 -2.2978 -1.0414 7 6 5.6700 -2.7674 -0.1653 8 9 6.7770 -3.3851 -0.6324 9 6 5.4848 -2.5971 1.1972 10 6 4.3563 -1.9709 1.6762 11 6 3.3702 -1.4988 0.8079 12 6 2.0849 -0.8072 1.1902 13 1 2.2725 -0.1332 2.0261 14 6 1.0718 -1.8432 1.6043 15 1 0.8046 -2.6390 0.9249 16 6 0.4861 -1.7750 2.8506 17 7 0.8119 -0.8063 3.6782 18 14 -0.7691 -3.0596 3.3643 19 1 -0.0748 -4.1932 4.0263 20 1 -1.7395 -2.4528 4.3106 21 1 -1.4908 -3.5540 2.1643 22 1 -0.3634 -1.0265 -0.0468 23 1 -0.3634 0.4728 0.9125 24 1 -0.3634 0.5538 -0.8657 25 1 4.8430 -2.4235 -2.1057 26 1 6.2314 -2.9586 1.8888 27 1 4.2295 -1.8468 2.7416 28 1 0.3996 -0.7581 4.5549 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260531254.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:19 Heat of formation + Delta-G solvation = -30.140826 kcal Electronic energy + Delta-G solvation = -14523.282769 eV Core-core repulsion = 11965.232705 eV Total energy + Delta-G solvation = -2558.050064 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.052 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.45575 -38.60327 -35.19910 -31.99624 -30.48894 -30.05650 -26.39385 -24.42384 -22.67870 -21.46538 -19.81540 -17.53679 -16.79775 -15.91579 -15.19978 -15.15873 -14.97095 -14.50668 -13.87326 -13.17970 -13.08705 -12.60085 -12.57799 -12.09695 -11.65782 -11.37140 -11.22698 -11.02604 -10.64413 -10.48221 -10.30949 -9.84160 -9.60014 -9.19413 -8.90743 -8.73277 -8.02087 -6.72515 -6.26100 -4.30114 1.67083 1.77001 2.33787 3.04687 3.18875 3.26139 3.30142 4.08396 4.28748 4.79111 5.04649 5.27660 5.35430 5.61536 5.82221 5.90436 5.98969 6.16504 6.28859 6.51143 6.62731 6.69841 6.75249 6.87391 7.10064 7.21300 7.32325 7.47973 7.66047 8.01729 8.77233 9.31151 10.79501 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.025319 B = 0.009611 C = 0.007822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.634217 B = 2912.715037 C = 3578.934881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.031 4.031 3 H 0.078 0.922 4 S -0.185 6.185 5 C -0.070 4.070 6 C -0.128 4.128 7 C 0.077 3.923 8 F -0.148 7.148 9 C -0.156 4.156 10 C -0.073 4.073 11 C -0.050 4.050 12 C 0.050 3.950 13 H 0.097 0.903 14 C -0.494 4.494 15 H 0.063 0.937 16 C 0.071 3.929 17 N -0.888 5.888 18 Si 0.895 3.105 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.270 1.270 22 H 0.077 0.923 23 H 0.071 0.929 24 H 0.031 0.969 25 H 0.126 0.874 26 H 0.127 0.873 27 H 0.130 0.870 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.925 0.152 -4.220 5.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.159 4.159 3 H 0.096 0.904 4 S 0.058 5.942 5 C -0.183 4.183 6 C -0.153 4.153 7 C 0.056 3.944 8 F -0.127 7.127 9 C -0.177 4.177 10 C -0.093 4.093 11 C -0.055 4.055 12 C 0.031 3.969 13 H 0.115 0.885 14 C -0.532 4.532 15 H 0.082 0.918 16 C -0.133 4.133 17 N -0.525 5.525 18 Si 0.722 3.278 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.194 1.194 22 H 0.096 0.904 23 H 0.090 0.910 24 H 0.050 0.950 25 H 0.144 0.856 26 H 0.145 0.855 27 H 0.148 0.852 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.377 0.174 -5.291 6.279 hybrid contribution 0.131 -0.844 1.499 1.726 sum 3.508 -0.670 -3.792 5.209 Atomic orbital electron populations 1.21463 0.91576 1.03369 0.99996 1.24314 0.99870 0.98432 0.93303 0.90412 1.85479 1.27917 1.58479 1.22360 1.21781 0.96980 1.02939 0.96567 1.20078 0.93093 1.02792 0.99301 1.17216 0.84763 0.99980 0.92398 1.91430 1.50940 1.80905 1.89407 1.20813 0.99999 1.03573 0.93304 1.20687 0.91629 0.96727 1.00271 1.21844 0.95451 0.97048 0.91173 1.18621 0.88244 0.95634 0.94432 0.88511 1.20762 1.20895 1.11279 1.00239 0.91841 1.24964 0.96616 0.95468 0.96231 1.69844 1.42999 1.31365 1.08288 0.86522 0.81046 0.81469 0.78757 1.20423 1.21003 1.19444 0.90381 0.91049 0.94970 0.85604 0.85493 0.85186 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.04 8.51 37.16 0.32 -1.72 15 2 C -0.03 -0.62 3.92 -26.13 -0.10 -0.72 15 3 H 0.08 1.48 8.14 -51.93 -0.42 1.05 15 4 S -0.19 -3.68 22.53 -107.50 -2.42 -6.10 15 5 C -0.07 -1.43 6.48 -39.13 -0.25 -1.68 15 6 C -0.13 -2.36 10.04 -39.38 -0.40 -2.76 15 7 C 0.08 1.38 7.32 -39.46 -0.29 1.09 15 8 F -0.15 -2.51 17.28 2.25 0.04 -2.47 15 9 C -0.16 -2.73 9.98 -39.68 -0.40 -3.13 15 10 C -0.07 -1.43 9.97 -39.28 -0.39 -1.82 15 11 C -0.05 -1.07 5.20 -103.77 -0.54 -1.61 15 12 C 0.05 1.14 2.77 -92.24 -0.26 0.89 15 13 H 0.10 2.41 6.90 -51.93 -0.36 2.05 15 14 C -0.49 -12.19 5.94 -34.44 -0.20 -12.40 15 15 H 0.06 1.64 7.72 -52.49 -0.41 1.23 15 16 C 0.07 1.76 5.46 -17.82 -0.10 1.67 15 17 N -0.89 -23.02 12.60 55.43 0.70 -22.32 15 18 Si 0.89 19.86 29.54 -169.99 -5.02 14.83 15 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 21 H -0.27 -5.96 7.11 56.52 0.40 -5.56 15 22 H 0.08 1.62 6.82 -51.93 -0.35 1.26 15 23 H 0.07 1.43 8.14 -51.93 -0.42 1.01 15 24 H 0.03 0.53 8.14 -51.93 -0.42 0.11 15 25 H 0.13 2.08 8.06 -52.49 -0.42 1.66 15 26 H 0.13 1.87 8.06 -52.49 -0.42 1.45 15 27 H 0.13 2.51 8.06 -52.49 -0.42 2.09 15 28 H 0.27 6.63 8.31 -40.82 -0.34 6.29 15 LS Contribution 257.21 15.07 3.88 3.88 Total: -1.00 -25.21 257.21 -8.23 -33.44 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -2.79 Total: 0.94 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: -2.61 Total: -22.20 kcal Atomic # 7 Polarization: -23.02 SS G_CDS: 0.70 Total: -22.32 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.04 Total: -2.47 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.83 kcal Atomic # 16 Polarization: -3.68 SS G_CDS: -2.42 Total: -6.10 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -25.21 -8.23 -33.44 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260531254.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.300 kcal (2) G-P(sol) polarization free energy of solvation -25.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds