Wall clock time and date at job start Mon Mar 30 2020 05:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 110.99708 * 2 1 4 4 S 1.83291 * 111.10142 * 235.84014 * 2 1 3 5 5 C 1.77440 * 96.61905 * 217.21792 * 4 2 1 6 6 C 1.38780 * 130.54553 * 195.22256 * 5 4 2 7 7 C 1.38247 * 120.14285 * 179.65471 * 6 5 4 8 8 F 1.35099 * 120.37697 * 179.90890 * 7 6 5 9 9 C 1.38551 * 119.24130 * 359.88922 * 7 6 5 10 10 C 1.37661 * 120.51198 * 0.17656 * 9 7 6 11 11 C 1.38904 * 108.28317 * 15.30383 * 5 4 2 12 12 C 1.50879 * 115.35773 * 0.53572 * 11 5 4 13 13 H 1.09004 * 109.33347 * 219.23917 * 12 11 5 14 14 C 1.50701 * 109.10099 * 99.78991 * 12 11 5 15 15 H 1.07996 * 120.00101 * 303.35792 * 14 12 11 16 16 C 1.37878 * 119.99819 * 123.35752 * 14 12 11 17 17 N 1.31513 * 120.00176 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 120.00053 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.46974 * 89.99599 * 18 16 14 20 20 H 1.48497 * 109.47338 * 209.99516 * 18 16 14 21 21 H 1.48498 * 109.46948 * 330.00183 * 18 16 14 22 22 H 1.08996 * 109.47371 * 177.39078 * 1 2 3 23 23 H 1.09003 * 109.47408 * 297.38889 * 1 2 3 24 24 H 1.08998 * 109.47294 * 57.39212 * 1 2 3 25 25 H 1.08002 * 119.93291 * 359.62776 * 6 5 4 26 26 H 1.07999 * 119.74330 * 180.15275 * 9 7 6 27 27 H 1.08000 * 119.45817 * 180.02562 * 10 9 7 28 28 H 0.96997 * 120.00290 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9205 1.0176 0.0000 4 16 2.1898 -0.9602 -1.4150 5 6 3.5730 -1.6657 -0.5561 6 6 4.7092 -2.2978 -1.0414 7 6 5.6700 -2.7674 -0.1653 8 9 6.7770 -3.3851 -0.6324 9 6 5.4848 -2.5971 1.1972 10 6 4.3563 -1.9709 1.6762 11 6 3.3702 -1.4988 0.8079 12 6 2.0849 -0.8072 1.1902 13 1 2.2725 -0.1332 2.0261 14 6 1.0718 -1.8432 1.6043 15 1 0.8046 -2.6390 0.9249 16 6 0.4861 -1.7750 2.8506 17 7 0.8119 -0.8063 3.6782 18 14 -0.7691 -3.0596 3.3643 19 1 -0.0748 -4.1932 4.0263 20 1 -1.7395 -2.4528 4.3106 21 1 -1.4908 -3.5540 2.1643 22 1 -0.3634 -1.0265 -0.0468 23 1 -0.3634 0.4728 0.9125 24 1 -0.3634 0.5538 -0.8657 25 1 4.8430 -2.4235 -2.1057 26 1 6.2314 -2.9586 1.8888 27 1 4.2295 -1.8468 2.7416 28 1 0.3996 -0.7581 4.5549 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260531254.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:19 Heat of formation + Delta-G solvation = -40.780451 kcal Electronic energy + Delta-G solvation = -14523.744138 eV Core-core repulsion = 11965.232705 eV Total energy + Delta-G solvation = -2558.511432 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.85716 -40.15330 -36.87779 -33.84410 -31.99013 -31.59835 -28.16125 -26.13981 -24.21824 -23.00104 -21.48993 -19.02217 -18.63144 -17.45919 -16.81600 -16.56357 -16.54223 -16.15399 -15.53799 -14.74364 -14.64778 -14.22318 -14.10876 -13.72258 -13.30324 -12.99586 -12.88574 -12.78909 -12.34863 -12.15117 -11.89882 -11.49222 -11.37949 -10.79695 -10.69628 -10.46114 -9.57181 -8.34418 -8.10826 -6.24993 0.15732 0.25669 0.77310 1.39227 1.44785 1.46186 1.52999 2.38355 2.61438 3.14194 3.33102 3.76138 3.94432 4.11288 4.25282 4.30756 4.43391 4.65470 4.76074 5.04271 5.07542 5.10875 5.21161 5.27198 5.41320 5.58063 5.64085 5.71922 5.93711 6.16349 6.83643 7.38026 8.88868 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.025319 B = 0.009611 C = 0.007822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.634217 B = 2912.715037 C = 3578.934881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.035 4.035 3 H 0.089 0.911 4 S -0.172 6.172 5 C -0.084 4.084 6 C -0.127 4.127 7 C 0.085 3.915 8 F -0.138 7.138 9 C -0.144 4.144 10 C -0.083 4.083 11 C -0.079 4.079 12 C 0.050 3.950 13 H 0.068 0.932 14 C -0.494 4.494 15 H 0.049 0.951 16 C 0.034 3.966 17 N -0.915 5.915 18 Si 0.944 3.056 19 H -0.280 1.280 20 H -0.281 1.281 21 H -0.268 1.268 22 H 0.060 0.940 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.147 0.853 26 H 0.159 0.841 27 H 0.126 0.874 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.679 -0.523 -5.080 6.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.163 4.163 3 H 0.107 0.893 4 S 0.071 5.929 5 C -0.197 4.197 6 C -0.151 4.151 7 C 0.064 3.936 8 F -0.117 7.117 9 C -0.165 4.165 10 C -0.103 4.103 11 C -0.084 4.084 12 C 0.031 3.969 13 H 0.086 0.914 14 C -0.532 4.532 15 H 0.067 0.933 16 C -0.167 4.167 17 N -0.553 5.553 18 Si 0.770 3.230 19 H -0.206 1.206 20 H -0.207 1.207 21 H -0.193 1.193 22 H 0.079 0.921 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.165 0.835 26 H 0.177 0.823 27 H 0.144 0.856 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.136 -0.506 -6.161 7.438 hybrid contribution 0.013 -0.658 1.712 1.834 sum 4.149 -1.164 -4.449 6.194 Atomic orbital electron populations 1.21357 0.90960 1.02568 1.00664 1.24272 1.00437 0.98796 0.92842 0.89252 1.85309 1.27858 1.58375 1.21343 1.21920 0.97808 1.03785 0.96138 1.20319 0.92364 1.01851 1.00612 1.17240 0.84704 0.99220 0.92426 1.91463 1.50349 1.80586 1.89296 1.21062 0.99541 1.01967 0.93883 1.20766 0.92237 0.97293 1.00014 1.21805 0.95816 0.98461 0.92305 1.18520 0.88869 0.95002 0.94547 0.91377 1.20793 1.21410 1.11036 0.99949 0.93306 1.25489 0.98030 0.96841 0.96328 1.69937 1.44132 1.32727 1.08550 0.85760 0.79369 0.79548 0.78341 1.20581 1.20661 1.19269 0.92057 0.92295 0.92124 0.83509 0.82334 0.85600 0.92443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.71 8.51 71.98 0.61 -3.10 15 2 C -0.03 -1.40 3.92 30.98 0.12 -1.28 15 3 H 0.09 3.36 8.14 -2.39 -0.02 3.34 15 4 S -0.17 -6.61 22.53 -56.49 -1.27 -7.88 15 5 C -0.08 -3.32 6.48 22.56 0.15 -3.18 15 6 C -0.13 -4.38 10.04 22.40 0.22 -4.16 15 7 C 0.08 2.79 7.32 22.35 0.16 2.96 15 8 F -0.14 -4.21 17.28 44.97 0.78 -3.43 15 9 C -0.14 -4.68 9.98 22.21 0.22 -4.46 15 10 C -0.08 -3.20 9.97 22.47 0.22 -2.98 15 11 C -0.08 -3.36 5.20 -19.31 -0.10 -3.46 15 12 C 0.05 2.32 2.77 -11.84 -0.03 2.29 15 13 H 0.07 3.50 6.90 -2.38 -0.02 3.49 15 14 C -0.49 -24.68 5.94 25.60 0.15 -24.53 15 15 H 0.05 2.54 7.72 -2.91 -0.02 2.52 15 16 C 0.03 1.69 5.46 84.66 0.46 2.15 15 17 N -0.92 -48.29 12.60 21.45 0.27 -48.02 15 18 Si 0.94 40.87 29.54 68.60 2.03 42.90 15 19 H -0.28 -12.11 7.11 99.48 0.71 -11.40 15 20 H -0.28 -11.94 7.11 99.48 0.71 -11.24 15 21 H -0.27 -11.43 7.11 99.48 0.71 -10.72 15 22 H 0.06 2.53 6.82 -2.39 -0.02 2.51 15 23 H 0.06 2.38 8.14 -2.39 -0.02 2.36 15 24 H 0.06 1.94 8.14 -2.39 -0.02 1.92 15 25 H 0.15 4.40 8.06 -2.91 -0.02 4.38 15 26 H 0.16 4.11 8.06 -2.91 -0.02 4.09 15 27 H 0.13 4.89 8.06 -2.91 -0.02 4.87 15 28 H 0.27 13.46 8.31 -92.71 -0.77 12.68 15 Total: -1.00 -52.55 257.21 5.16 -47.39 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: 1.17 Total: 8.79 kcal Atomic # 6 Polarization: -41.94 SS G_CDS: 2.20 Total: -39.74 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: 0.27 Total: -48.02 kcal Atomic # 9 Polarization: -4.21 SS G_CDS: 0.78 Total: -3.43 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Atomic # 16 Polarization: -6.61 SS G_CDS: -1.27 Total: -7.88 kcal Total: -52.55 5.16 -47.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260531254.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.607 kcal (2) G-P(sol) polarization free energy of solvation -52.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds