Wall clock time and date at job start Mon Mar 30 2020 05:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99871 * 2 1 4 4 H 1.48498 * 109.46783 * 239.99962 * 3 2 1 5 5 H 1.48502 * 109.46946 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47237 * 120.00024 * 3 2 1 7 7 C 1.37872 * 120.00331 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00541 * 173.86771 * 7 2 1 9 9 C 1.50702 * 119.99820 * 353.87511 * 7 2 1 10 10 C 1.50692 * 115.55237 * 82.80458 * 9 7 2 11 11 C 1.38264 * 119.92476 * 53.73657 * 10 9 7 12 12 C 1.38580 * 120.04112 * 180.02562 * 11 10 9 13 13 O 1.35999 * 120.05532 * 179.97438 * 12 11 10 14 14 C 1.39094 * 119.88191 * 359.97438 * 12 11 10 15 15 O 1.36054 * 120.07991 * 179.97438 * 14 12 11 16 16 C 1.38715 * 119.83912 * 0.02562 * 14 12 11 17 17 F 1.35100 * 120.01570 * 180.02562 * 16 14 12 18 18 C 1.38230 * 119.92091 * 234.03298 * 10 9 7 19 19 C 1.53003 * 117.49753 * 228.47549 * 9 7 2 20 20 C 1.53002 * 117.49357 * 297.13285 * 9 7 2 21 21 H 0.96997 * 120.00245 * 354.95367 * 1 2 3 22 22 H 1.08003 * 119.97222 * 0.04390 * 11 10 9 23 23 H 0.96698 * 113.99898 * 270.01729 * 13 12 11 24 24 H 0.96697 * 114.00133 * 270.02632 * 15 14 12 25 25 H 1.07999 * 119.93825 * 359.97438 * 18 10 9 26 26 H 1.08995 * 117.49929 * 214.99931 * 19 9 7 27 27 H 1.08999 * 117.49556 * 0.02562 * 19 9 7 28 28 H 1.08994 * 117.50010 * 359.97438 * 20 9 7 29 29 H 1.09006 * 117.49294 * 145.00257 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0799 -1.1967 -0.0994 9 6 1.2576 -2.4953 0.1404 10 6 0.6637 -3.0438 -1.1314 11 6 1.4644 -3.2269 -2.2436 12 6 0.9206 -3.7306 -3.4145 13 8 1.7078 -3.9104 -4.5089 14 6 -0.4316 -4.0520 -3.4685 15 8 -0.9697 -4.5463 -4.6162 16 6 -1.2304 -3.8663 -2.3497 17 9 -2.5441 -4.1777 -2.3980 18 6 -0.6816 -3.3569 -1.1851 19 6 1.7782 -3.5018 1.1684 20 6 0.4845 -2.7299 1.4397 21 1 -0.4850 0.8367 0.0739 22 1 2.5143 -2.9775 -2.1996 23 1 1.7512 -3.1409 -5.0929 24 1 -1.3095 -3.8677 -5.2154 25 1 -1.3047 -3.2083 -0.3156 26 1 1.6912 -4.5606 0.9248 27 1 2.6608 -3.2225 1.7438 28 1 0.5166 -1.9433 2.1935 29 1 -0.4537 -3.2811 1.3746 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260534266.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:14 Heat of formation + Delta-G solvation = -103.221603 kcal Electronic energy + Delta-G solvation = -16777.328781 eV Core-core repulsion = 13773.356826 eV Total energy + Delta-G solvation = -3003.971955 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -49.92439 -41.06086 -38.96962 -37.82101 -36.36381 -33.99823 -30.90043 -30.03222 -27.63371 -24.30565 -23.93952 -22.68404 -21.38524 -19.84030 -19.09062 -18.10961 -17.74154 -17.31536 -16.80866 -16.59525 -16.26731 -15.73676 -15.42517 -15.10925 -14.75809 -13.90225 -13.45806 -13.42905 -13.06561 -12.85955 -12.72124 -12.49370 -12.26239 -11.98338 -11.60158 -11.25357 -10.99027 -10.49016 -10.20745 -9.61083 -9.25388 -8.10333 -6.24306 0.14001 0.16195 1.45324 1.47302 1.53475 2.42009 2.48066 2.85273 3.15467 3.17911 3.40642 3.65438 3.96787 4.05124 4.41146 4.51390 4.60786 4.71432 4.89483 4.99113 5.01076 5.12135 5.25477 5.50440 5.59396 5.68642 5.79654 5.88599 6.35942 6.55778 6.81230 6.89711 7.45099 8.96291 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.024578 B = 0.008652 C = 0.008036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.938999 B = 3235.329369 C = 3483.625739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.033 3.967 3 Si 0.946 3.054 4 H -0.270 1.270 5 H -0.289 1.289 6 H -0.273 1.273 7 C -0.507 4.507 8 H 0.061 0.939 9 C 0.041 3.959 10 C 0.026 3.974 11 C -0.134 4.134 12 C 0.112 3.888 13 O -0.489 6.489 14 C 0.021 3.979 15 O -0.486 6.486 16 C 0.074 3.926 17 F -0.141 7.141 18 C -0.150 4.150 19 C -0.176 4.176 20 C -0.162 4.162 21 H 0.260 0.740 22 H 0.137 0.863 23 H 0.409 0.591 24 H 0.402 0.598 25 H 0.129 0.871 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.255 -3.856 -5.956 7.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.169 4.169 3 Si 0.772 3.228 4 H -0.195 1.195 5 H -0.215 1.215 6 H -0.198 1.198 7 C -0.545 4.545 8 H 0.079 0.921 9 C 0.041 3.959 10 C 0.025 3.975 11 C -0.153 4.153 12 C 0.066 3.934 13 O -0.302 6.302 14 C -0.025 4.025 15 O -0.298 6.298 16 C 0.054 3.946 17 F -0.119 7.119 18 C -0.169 4.169 19 C -0.213 4.213 20 C -0.199 4.199 21 H 0.069 0.931 22 H 0.155 0.845 23 H 0.268 0.732 24 H 0.260 0.740 25 H 0.147 0.853 26 H 0.106 0.894 27 H 0.108 0.892 28 H 0.085 0.915 29 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.278 -4.834 -5.575 7.384 hybrid contribution -0.358 1.968 -0.224 2.013 sum -0.080 -2.866 -5.799 6.469 Atomic orbital electron populations 1.70112 1.06962 1.27558 1.48634 1.25614 0.95465 1.01689 0.94094 0.85800 0.78512 0.79555 0.78910 1.19530 1.21453 1.19784 1.20591 0.92770 0.89329 1.51773 0.92126 1.17760 0.99204 0.94113 0.84846 1.19497 0.91504 0.90230 0.96221 1.21256 1.01564 1.00423 0.92009 1.18295 0.87819 0.98643 0.88605 1.84800 1.67247 1.43536 1.34605 1.18463 0.90892 1.05740 0.87413 1.84874 1.79627 1.36531 1.28755 1.17950 0.77984 1.02995 0.95651 1.91429 1.32515 1.90983 1.97018 1.21023 0.96502 1.02147 0.97237 1.23073 0.97733 0.96197 1.04269 1.22587 0.94058 1.01563 1.01737 0.93079 0.84489 0.73206 0.73990 0.85296 0.89367 0.89238 0.91481 0.90471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.05 13.02 21.45 0.28 -47.77 15 2 C 0.03 1.70 5.40 84.65 0.46 2.16 15 3 Si 0.95 40.62 29.55 68.60 2.03 42.65 15 4 H -0.27 -11.27 7.11 99.48 0.71 -10.56 15 5 H -0.29 -12.40 7.11 99.48 0.71 -11.69 15 6 H -0.27 -11.49 7.11 99.48 0.71 -10.78 15 7 C -0.51 -25.53 8.52 25.60 0.22 -25.31 15 8 H 0.06 3.01 7.82 -2.91 -0.02 2.98 15 9 C 0.04 1.89 1.58 -53.67 -0.08 1.80 15 10 C 0.03 1.13 5.25 -19.86 -0.10 1.03 15 11 C -0.13 -5.23 9.37 22.36 0.21 -5.02 15 12 C 0.11 3.89 6.72 22.56 0.15 4.04 15 13 O -0.49 -14.05 13.29 -79.66 -1.06 -15.11 15 14 C 0.02 0.75 6.72 22.59 0.15 0.90 15 15 O -0.49 -14.61 13.15 -80.29 -1.06 -15.67 15 16 C 0.07 2.86 7.31 22.43 0.16 3.02 15 17 F -0.14 -5.31 17.11 44.97 0.77 -4.54 15 18 C -0.15 -6.28 9.28 22.32 0.21 -6.07 15 19 C -0.18 -7.01 9.94 30.62 0.30 -6.71 15 20 C -0.16 -7.11 9.12 30.62 0.28 -6.83 15 21 H 0.26 13.51 8.32 -92.71 -0.77 12.74 15 22 H 0.14 5.23 8.05 -2.91 -0.02 5.21 15 23 H 0.41 7.39 9.06 -74.06 -0.67 6.71 15 24 H 0.40 7.82 9.06 -74.06 -0.67 7.15 15 25 H 0.13 5.49 6.39 -2.91 -0.02 5.47 15 26 H 0.09 3.17 8.14 -2.39 -0.02 3.15 15 27 H 0.09 3.44 8.14 -2.39 -0.02 3.42 15 28 H 0.07 3.14 8.14 -2.39 -0.02 3.12 15 29 H 0.08 3.18 6.54 -2.38 -0.02 3.17 15 Total: -1.00 -60.12 266.33 2.78 -57.34 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: -0.13 Total: 20.09 kcal Atomic # 6 Polarization: -38.94 SS G_CDS: 1.95 Total: -36.99 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: 0.28 Total: -47.77 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: -2.11 Total: -30.78 kcal Atomic # 9 Polarization: -5.31 SS G_CDS: 0.77 Total: -4.54 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Total: -60.12 2.78 -57.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260534266.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.886 kcal (2) G-P(sol) polarization free energy of solvation -60.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds