Wall clock time and date at job start Mon Mar 30 2020 05:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 H 1.08997 * 110.66379 * 56.76099 * 10 9 7 12 12 C 1.54708 * 110.74983 * 180.18078 * 10 9 7 13 13 C 1.51641 * 101.92845 * 143.60429 * 12 10 9 14 14 C 1.38901 * 107.04169 * 344.64466 * 13 12 10 15 15 C 1.39253 * 118.88405 * 178.94059 * 14 13 12 16 16 C 1.37977 * 120.27023 * 0.39146 * 15 14 13 17 17 C 1.38223 * 120.36315 * 0.02916 * 16 15 14 18 18 C 1.37812 * 132.17727 * 164.13650 * 13 12 10 19 19 Cl 1.73600 * 120.02779 * 1.00284 * 18 13 12 20 20 O 1.36140 * 111.22792 * 358.88284 * 14 13 12 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 23 23 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 24 24 H 1.09008 * 110.93554 * 261.76170 * 12 10 9 25 25 H 1.09001 * 110.93821 * 25.44476 * 12 10 9 26 26 H 1.08008 * 119.86210 * 180.41936 * 15 14 13 27 27 H 1.08002 * 119.81924 * 180.02562 * 16 15 14 28 28 H 1.08003 * 120.12304 * 179.76026 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 1 2.9201 -3.5912 0.8525 12 6 1.5018 -5.0188 -0.0051 13 6 2.4005 -5.8658 -0.8850 14 6 3.2489 -4.9956 -1.5577 15 6 4.2022 -5.5221 -2.4255 16 6 4.2918 -6.8858 -2.6158 17 6 3.4367 -7.7421 -1.9480 18 6 2.4881 -7.2273 -1.0796 19 17 1.4105 -8.2964 -0.2373 20 8 2.9845 -3.7002 -1.2331 21 1 -0.4850 0.8401 0.0004 22 1 0.6247 -2.5571 0.8897 23 1 0.6240 -2.5568 -0.8903 24 1 1.4401 -5.4326 1.0015 25 1 0.5094 -4.9177 -0.4447 26 1 4.8744 -4.8603 -2.9515 27 1 5.0342 -7.2863 -3.2903 28 1 3.5077 -8.8086 -2.1027 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260578017.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:24 Heat of formation + Delta-G solvation = -25.845935 kcal Electronic energy + Delta-G solvation = -14205.701965 eV Core-core repulsion = 11633.421646 eV Total energy + Delta-G solvation = -2572.280319 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.74549 -37.50429 -36.20761 -33.39627 -32.24018 -30.34595 -29.68412 -26.90673 -23.56765 -22.27723 -21.44937 -20.65953 -17.19973 -16.63940 -16.41536 -15.53674 -15.02956 -14.53129 -14.19354 -13.45511 -13.25143 -12.99342 -12.37289 -12.19321 -11.88222 -11.61732 -11.44604 -11.26744 -10.95215 -10.83908 -10.64281 -10.50340 -10.31746 -9.51557 -9.18382 -8.62349 -8.43308 -7.87556 -6.05823 -4.07772 1.23551 1.41958 2.18659 3.30873 3.37213 3.41968 3.63291 3.84027 4.42809 4.72576 4.91883 5.09002 5.28774 5.32681 5.40847 5.53069 5.62587 5.84609 6.07957 6.22148 6.36636 6.38982 6.44675 6.54227 6.65766 7.36255 7.51167 7.73219 7.90850 8.29182 8.96135 9.56037 11.05608 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.041105 B = 0.005898 C = 0.005265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.026632 B = 4746.293039 C = 5316.364243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.273 1.273 6 H -0.286 1.286 7 C -0.517 4.517 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.090 3.910 11 H 0.078 0.922 12 C -0.107 4.107 13 C -0.172 4.172 14 C 0.135 3.865 15 C -0.149 4.149 16 C -0.076 4.076 17 C -0.158 4.158 18 C 0.015 3.985 19 Cl -0.077 7.077 20 O -0.278 6.278 21 H 0.262 0.738 22 H 0.041 0.959 23 H 0.030 0.970 24 H 0.087 0.913 25 H 0.094 0.906 26 H 0.132 0.868 27 H 0.135 0.865 28 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.744 -14.747 -2.472 16.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.198 1.198 6 H -0.212 1.212 7 C -0.555 4.555 8 H 0.078 0.922 9 C -0.012 4.012 10 C 0.035 3.965 11 H 0.096 0.904 12 C -0.144 4.144 13 C -0.174 4.174 14 C 0.088 3.912 15 C -0.167 4.167 16 C -0.094 4.094 17 C -0.177 4.177 18 C -0.012 4.012 19 Cl -0.048 7.048 20 O -0.191 6.191 21 H 0.071 0.929 22 H 0.059 0.941 23 H 0.048 0.952 24 H 0.105 0.895 25 H 0.112 0.888 26 H 0.150 0.850 27 H 0.153 0.847 28 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.536 -14.487 -2.491 15.708 hybrid contribution 0.200 0.722 0.156 0.765 sum 5.736 -13.765 -2.335 15.094 Atomic orbital electron populations 1.69949 1.06059 1.26843 1.50666 1.24996 0.94867 0.99362 0.95151 0.86533 0.79907 0.83153 0.78094 1.20631 1.19767 1.21192 1.21106 0.93236 0.90410 1.50782 0.92240 1.19328 0.92827 0.90362 0.98731 1.23875 0.93167 0.95776 0.83649 0.90377 1.22012 0.99177 0.93877 0.99287 1.20786 1.00481 0.92318 1.03824 1.19764 0.92301 0.85185 0.93996 1.20369 0.99147 0.95215 1.02012 1.20722 0.98297 0.91906 0.98482 1.20808 0.97260 1.00312 0.99271 1.20091 0.94706 0.88844 0.97523 1.98349 1.64229 1.65101 1.77122 1.87095 1.71020 1.19916 1.41049 0.92858 0.94068 0.95190 0.89460 0.88813 0.85025 0.84695 0.85001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.49 13.29 55.43 0.74 -25.75 15 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 15 3 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 15 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 5 H -0.27 -6.52 7.11 56.52 0.40 -6.12 15 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 7 C -0.52 -14.48 8.95 -34.44 -0.31 -14.79 15 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 15 9 C 0.02 0.61 4.68 -27.89 -0.13 0.48 15 10 C 0.09 1.88 3.55 -25.83 -0.09 1.79 15 11 H 0.08 1.57 8.14 -51.93 -0.42 1.15 15 12 C -0.11 -1.87 6.47 -26.52 -0.17 -2.04 15 13 C -0.17 -2.92 6.13 -104.07 -0.64 -3.55 15 14 C 0.14 2.44 7.04 -38.96 -0.27 2.16 15 15 C -0.15 -2.17 10.06 -39.30 -0.40 -2.56 15 16 C -0.08 -0.90 10.01 -39.68 -0.40 -1.30 15 17 C -0.16 -1.96 9.85 -39.48 -0.39 -2.35 15 18 C 0.01 0.22 6.31 -39.63 -0.25 -0.03 15 19 Cl -0.08 -1.02 28.81 -51.86 -1.49 -2.51 15 20 O -0.28 -6.00 10.64 -20.18 -0.21 -6.22 15 21 H 0.26 7.31 8.31 -40.82 -0.34 6.97 15 22 H 0.04 1.06 8.14 -51.92 -0.42 0.63 15 23 H 0.03 0.81 8.14 -51.93 -0.42 0.39 15 24 H 0.09 1.36 8.14 -51.92 -0.42 0.94 15 25 H 0.09 1.66 7.92 -51.93 -0.41 1.25 15 26 H 0.13 1.70 8.06 -52.48 -0.42 1.28 15 27 H 0.14 1.13 8.06 -52.49 -0.42 0.71 15 28 H 0.13 1.31 8.06 -52.48 -0.42 0.88 15 LS Contribution 262.83 15.07 3.96 3.96 Total: -1.00 -29.82 262.83 -8.09 -37.90 By element: Atomic # 1 Polarization: -0.43 SS G_CDS: -2.91 Total: -3.34 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -3.14 Total: -20.66 kcal Atomic # 7 Polarization: -26.49 SS G_CDS: 0.74 Total: -25.75 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: -0.21 Total: -6.22 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -1.49 Total: -2.51 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.82 -8.09 -37.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260578017.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.058 kcal (2) G-P(sol) polarization free energy of solvation -29.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds