Wall clock time and date at job start Mon Mar 30 2020 05:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 H 1.08997 * 110.66379 * 56.76099 * 10 9 7 12 12 C 1.54708 * 110.74983 * 180.18078 * 10 9 7 13 13 C 1.51641 * 101.92845 * 143.60429 * 12 10 9 14 14 C 1.38901 * 107.04169 * 344.64466 * 13 12 10 15 15 C 1.39253 * 118.88405 * 178.94059 * 14 13 12 16 16 C 1.37977 * 120.27023 * 0.39146 * 15 14 13 17 17 C 1.38223 * 120.36315 * 0.02916 * 16 15 14 18 18 C 1.37812 * 132.17727 * 164.13650 * 13 12 10 19 19 Cl 1.73600 * 120.02779 * 1.00284 * 18 13 12 20 20 O 1.36140 * 111.22792 * 358.88284 * 14 13 12 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 23 23 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 24 24 H 1.09008 * 110.93554 * 261.76170 * 12 10 9 25 25 H 1.09001 * 110.93821 * 25.44476 * 12 10 9 26 26 H 1.08008 * 119.86210 * 180.41936 * 15 14 13 27 27 H 1.08002 * 119.81924 * 180.02562 * 16 15 14 28 28 H 1.08003 * 120.12304 * 179.76026 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 1 2.9201 -3.5912 0.8525 12 6 1.5018 -5.0188 -0.0051 13 6 2.4005 -5.8658 -0.8850 14 6 3.2489 -4.9956 -1.5577 15 6 4.2022 -5.5221 -2.4255 16 6 4.2918 -6.8858 -2.6158 17 6 3.4367 -7.7421 -1.9480 18 6 2.4881 -7.2273 -1.0796 19 17 1.4105 -8.2964 -0.2373 20 8 2.9845 -3.7002 -1.2331 21 1 -0.4850 0.8401 0.0004 22 1 0.6247 -2.5571 0.8897 23 1 0.6240 -2.5568 -0.8903 24 1 1.4401 -5.4326 1.0015 25 1 0.5094 -4.9177 -0.4447 26 1 4.8744 -4.8603 -2.9515 27 1 5.0342 -7.2863 -3.2903 28 1 3.5077 -8.8086 -2.1027 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260578017.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:24 Heat of formation + Delta-G solvation = -42.671407 kcal Electronic energy + Delta-G solvation = -14206.431572 eV Core-core repulsion = 11633.421646 eV Total energy + Delta-G solvation = -2573.009926 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.09463 -38.73218 -37.30656 -35.41176 -33.74802 -31.98726 -30.86758 -28.58339 -25.40900 -23.49372 -22.68840 -22.34669 -18.63824 -18.46989 -17.85297 -16.89816 -16.65337 -15.98732 -15.62043 -14.84492 -14.52227 -14.27331 -14.14658 -13.80269 -13.47107 -13.16984 -12.96708 -12.69596 -12.53946 -12.39940 -12.08627 -11.91516 -11.90379 -11.36311 -11.20355 -10.61667 -9.74013 -9.15299 -8.23529 -6.33426 0.11560 0.27246 1.09177 1.39105 1.40615 1.52139 2.34681 2.41088 2.61660 3.11098 3.45896 3.60355 3.95109 4.07166 4.16698 4.37543 4.43115 4.52504 4.71363 4.80292 4.87318 5.16183 5.27261 5.31745 5.34947 5.43478 5.65560 5.72931 6.11269 6.29335 6.78021 7.34640 8.88344 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.041105 B = 0.005898 C = 0.005265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.026632 B = 4746.293039 C = 5316.364243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.965 3.035 4 H -0.268 1.268 5 H -0.268 1.268 6 H -0.281 1.281 7 C -0.537 4.537 8 H 0.056 0.944 9 C 0.030 3.970 10 C 0.095 3.905 11 H 0.081 0.919 12 C -0.097 4.097 13 C -0.186 4.186 14 C 0.092 3.908 15 C -0.149 4.149 16 C -0.060 4.060 17 C -0.143 4.143 18 C 0.005 3.995 19 Cl -0.067 7.067 20 O -0.313 6.313 21 H 0.265 0.735 22 H 0.028 0.972 23 H -0.001 1.001 24 H 0.104 0.896 25 H 0.083 0.917 26 H 0.144 0.856 27 H 0.182 0.818 28 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.487 -16.364 -3.203 18.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.790 3.210 4 H -0.194 1.194 5 H -0.193 1.193 6 H -0.206 1.206 7 C -0.575 4.575 8 H 0.074 0.926 9 C -0.007 4.007 10 C 0.040 3.960 11 H 0.098 0.902 12 C -0.134 4.134 13 C -0.188 4.188 14 C 0.046 3.954 15 C -0.168 4.168 16 C -0.078 4.078 17 C -0.161 4.161 18 C -0.022 4.022 19 Cl -0.038 7.038 20 O -0.228 6.228 21 H 0.074 0.926 22 H 0.046 0.954 23 H 0.018 0.982 24 H 0.122 0.878 25 H 0.101 0.899 26 H 0.162 0.838 27 H 0.199 0.801 28 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 7.285 -16.129 -3.221 17.989 hybrid contribution -0.315 1.078 0.322 1.168 sum 6.971 -15.051 -2.899 16.839 Atomic orbital electron populations 1.70068 1.07612 1.27943 1.51453 1.25909 0.95787 1.03191 0.94604 0.85444 0.78525 0.78432 0.78649 1.19354 1.19273 1.20594 1.21465 0.93336 0.91910 1.50755 0.92573 1.19126 0.93252 0.91739 0.96541 1.23532 0.92653 0.95722 0.84123 0.90160 1.21826 0.98470 0.92516 1.00599 1.20721 1.00505 0.93322 1.04241 1.20158 0.94768 0.83903 0.96576 1.20765 0.98248 0.96852 1.00902 1.21251 0.98295 0.90359 0.97872 1.21316 0.95452 1.02187 0.97164 1.20307 0.95567 0.88127 0.98211 1.98353 1.64039 1.64352 1.77022 1.86990 1.71851 1.22660 1.41264 0.92590 0.95357 0.98240 0.87785 0.89857 0.83780 0.80087 0.81570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.50 13.29 21.45 0.28 -56.22 15 2 C 0.00 0.18 5.46 84.66 0.46 0.64 15 3 Si 0.97 44.89 29.54 68.60 2.03 46.92 15 4 H -0.27 -11.90 7.11 99.48 0.71 -11.20 15 5 H -0.27 -12.17 7.11 99.48 0.71 -11.46 15 6 H -0.28 -12.71 7.11 99.48 0.71 -12.00 15 7 C -0.54 -31.11 8.95 25.60 0.23 -30.88 15 8 H 0.06 3.21 7.74 -2.91 -0.02 3.19 15 9 C 0.03 1.61 4.68 29.85 0.14 1.75 15 10 C 0.09 4.14 3.55 31.18 0.11 4.26 15 11 H 0.08 3.37 8.14 -2.39 -0.02 3.35 15 12 C -0.10 -3.51 6.47 30.73 0.20 -3.31 15 13 C -0.19 -6.22 6.13 -19.51 -0.12 -6.34 15 14 C 0.09 3.32 7.04 22.67 0.16 3.48 15 15 C -0.15 -4.04 10.06 22.45 0.23 -3.81 15 16 C -0.06 -1.17 10.01 22.20 0.22 -0.95 15 17 C -0.14 -2.96 9.85 22.33 0.22 -2.74 15 18 C 0.00 0.12 6.31 22.24 0.14 0.26 15 19 Cl -0.07 -1.63 28.81 -2.72 -0.08 -1.71 15 20 O -0.31 -14.06 10.64 -95.14 -1.01 -15.07 15 21 H 0.27 15.10 8.31 -92.71 -0.77 14.33 15 22 H 0.03 1.54 8.14 -2.38 -0.02 1.52 15 23 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 15 24 H 0.10 3.29 8.14 -2.38 -0.02 3.27 15 25 H 0.08 3.11 7.92 -2.39 -0.02 3.10 15 26 H 0.14 3.44 8.06 -2.91 -0.02 3.42 15 27 H 0.18 1.90 8.06 -2.91 -0.02 1.88 15 28 H 0.17 2.35 8.06 -2.91 -0.02 2.33 15 Total: -1.00 -66.45 262.83 4.37 -62.07 By element: Atomic # 1 Polarization: 0.50 SS G_CDS: 1.16 Total: 1.66 kcal Atomic # 6 Polarization: -39.64 SS G_CDS: 1.99 Total: -37.65 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: 0.28 Total: -56.22 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -1.01 Total: -15.07 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -0.08 Total: -1.71 kcal Total: -66.45 4.37 -62.07 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260578017.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.403 kcal (2) G-P(sol) polarization free energy of solvation -66.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds