Wall clock time and date at job start Mon Mar 30 2020 05:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86803 * 119.99883 * 2 1 4 4 H 1.48504 * 109.47042 * 264.93304 * 3 2 1 5 5 H 1.48501 * 109.47264 * 24.92808 * 3 2 1 6 6 H 1.48500 * 109.47327 * 144.92997 * 3 2 1 7 7 C 1.38742 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00232 * 350.29149 * 7 2 1 9 9 N 1.36795 * 120.00022 * 170.29970 * 7 2 1 10 10 C 1.47036 * 120.57978 * 321.12987 * 9 7 2 11 11 C 1.53552 * 108.23776 * 225.03636 * 10 9 7 12 12 N 1.47061 * 108.19018 * 303.42238 * 11 10 9 13 13 C 1.40007 * 118.81600 * 44.77195 * 12 11 10 14 14 C 1.38617 * 120.27854 * 163.19646 * 13 12 11 15 15 C 1.38274 * 119.90616 * 180.02562 * 14 13 12 16 16 C 1.38365 * 120.29810 * 0.25670 * 15 14 13 17 17 C 1.38293 * 120.25181 * 0.02562 * 16 15 14 18 18 Cl 1.73604 * 120.07722 * 180.02562 * 17 16 15 19 19 C 1.38920 * 119.84006 * 0.02562 * 17 16 15 20 20 H 0.97006 * 120.00193 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.71463 * 344.72312 * 10 9 7 22 22 H 1.08998 * 109.71365 * 105.35062 * 10 9 7 23 23 H 1.09001 * 109.71706 * 63.09383 * 11 10 9 24 24 H 1.08994 * 109.72225 * 183.70254 * 11 10 9 25 25 H 0.96998 * 120.62404 * 225.01377 * 12 11 10 26 26 H 1.08000 * 120.04247 * 0.35030 * 14 13 12 27 27 H 1.08004 * 119.85418 * 180.26932 * 15 14 13 28 28 H 1.07997 * 119.87094 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.6048 1.9846 -1.3946 5 1 1.3982 2.6813 0.5901 6 1 3.4901 1.4736 0.8044 7 6 2.0100 -1.2015 -0.0005 8 1 1.4816 -2.1302 0.1568 9 7 3.3633 -1.2099 -0.2002 10 6 3.9813 -0.2990 -1.1750 11 6 4.9983 -1.0985 -2.0022 12 7 5.9633 -1.7104 -1.0765 13 6 5.4849 -2.3336 0.0824 14 6 6.2944 -3.2078 0.7909 15 6 5.8139 -3.8194 1.9341 16 6 4.5258 -3.5671 2.3720 17 6 3.7081 -2.7012 1.6692 18 17 2.0930 -2.3873 2.2230 19 6 4.1823 -2.0830 0.5190 20 1 -0.4851 0.8401 0.0004 21 1 3.2145 0.1115 -1.8321 22 1 4.4890 0.5107 -0.6510 23 1 4.4836 -1.8775 -2.5647 24 1 5.5189 -0.4317 -2.6894 25 1 6.9147 -1.6800 -1.2632 26 1 7.3008 -3.4068 0.4533 27 1 6.4469 -4.4971 2.4879 28 1 4.1577 -4.0483 3.2660 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260674630.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:11 Heat of formation + Delta-G solvation = 54.926734 kcal Electronic energy + Delta-G solvation = -15147.686247 eV Core-core repulsion = 12611.201245 eV Total energy + Delta-G solvation = -2536.485002 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.40923 -36.11712 -35.36882 -34.07831 -31.89721 -30.03838 -28.90043 -26.68503 -23.76987 -23.28580 -21.33819 -19.58771 -17.41774 -16.84572 -16.18360 -15.40788 -14.92003 -13.97463 -13.91441 -13.46907 -13.30599 -12.82929 -12.66898 -12.31111 -12.20545 -11.38922 -11.00739 -10.82017 -10.69633 -10.52290 -10.34744 -10.05357 -9.77262 -9.06225 -8.58041 -8.46075 -7.07551 -6.31364 -6.18184 -3.71115 2.19090 2.40566 3.08713 3.26583 3.29018 3.50426 4.01445 4.20841 4.48096 4.59918 5.11727 5.46083 5.58900 5.70314 5.71529 5.87860 6.06739 6.08451 6.29338 6.36610 6.57647 6.86124 6.96015 7.30301 7.46700 7.69623 7.88865 8.18056 8.37509 8.61878 9.28003 9.53688 10.81943 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.024631 B = 0.013994 C = 0.009782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.494172 B = 2000.348757 C = 2861.791432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.052 3.948 3 Si 0.880 3.120 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.267 1.267 7 C -0.287 4.287 8 H 0.117 0.883 9 N -0.474 5.474 10 C 0.078 3.922 11 C 0.116 3.884 12 N -0.757 5.757 13 C 0.116 3.884 14 C -0.144 4.144 15 C -0.172 4.172 16 C -0.110 4.110 17 C -0.088 4.088 18 Cl -0.052 7.052 19 C 0.171 3.829 20 H 0.271 0.729 21 H 0.090 0.910 22 H 0.051 0.949 23 H 0.059 0.941 24 H 0.075 0.925 25 H 0.393 0.607 26 H 0.108 0.892 27 H 0.110 0.890 28 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.032 -2.414 -0.818 10.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.152 4.152 3 Si 0.709 3.291 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.192 1.192 7 C -0.415 4.415 8 H 0.134 0.866 9 N -0.168 5.168 10 C -0.047 4.047 11 C -0.011 4.011 12 N -0.393 5.393 13 C 0.013 3.987 14 C -0.168 4.168 15 C -0.194 4.194 16 C -0.131 4.131 17 C -0.122 4.122 18 Cl -0.023 7.023 19 C 0.058 3.942 20 H 0.081 0.919 21 H 0.109 0.891 22 H 0.069 0.931 23 H 0.077 0.923 24 H 0.093 0.907 25 H 0.227 0.773 26 H 0.126 0.874 27 H 0.128 0.872 28 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 9.315 -2.012 -1.014 9.584 hybrid contribution 0.582 1.100 -0.044 1.245 sum 9.897 -0.912 -1.057 9.995 Atomic orbital electron populations 1.69723 1.05734 1.27468 1.48528 1.25358 0.95285 0.97813 0.96712 0.86985 0.80041 0.83899 0.78216 1.20503 1.21887 1.19198 1.19425 0.79024 0.96193 1.46859 0.86582 1.42529 1.04926 1.35231 1.34134 1.22447 0.96473 0.93191 0.92592 1.21759 0.91231 0.96591 0.91498 1.44173 1.07220 1.65199 1.22658 1.17124 0.93086 0.98283 0.90197 1.20183 0.99109 0.99339 0.98179 1.20198 0.95724 1.04710 0.98818 1.20491 0.93815 0.98949 0.99800 1.19998 0.89220 1.06059 0.96939 1.98345 1.20324 1.95061 1.88609 1.17385 0.89375 0.96592 0.90854 0.91864 0.89139 0.93114 0.92318 0.90709 0.77272 0.87383 0.87239 0.86912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.04 13.97 55.49 0.78 -24.26 15 2 C 0.05 1.41 5.36 -17.45 -0.09 1.32 15 3 Si 0.88 21.07 24.23 -169.99 -4.12 16.95 15 4 H -0.28 -6.20 6.66 56.52 0.38 -5.82 15 5 H -0.29 -7.09 7.11 56.52 0.40 -6.68 15 6 H -0.27 -6.54 6.62 56.52 0.37 -6.17 15 7 C -0.29 -7.66 6.97 -15.15 -0.11 -7.77 15 8 H 0.12 3.35 6.27 -52.49 -0.33 3.02 15 9 N -0.47 -11.37 2.63 -112.22 -0.29 -11.66 15 10 C 0.08 1.61 4.32 -3.46 -0.01 1.60 15 11 C 0.12 1.91 7.28 -3.45 -0.03 1.89 15 12 N -0.76 -12.54 5.83 -57.75 -0.34 -12.88 15 13 C 0.12 2.27 6.53 -83.46 -0.54 1.73 15 14 C -0.14 -2.48 9.93 -39.43 -0.39 -2.88 15 15 C -0.17 -2.94 10.04 -39.52 -0.40 -3.34 15 16 C -0.11 -2.08 9.82 -39.51 -0.39 -2.47 15 17 C -0.09 -1.96 6.29 -39.31 -0.25 -2.21 15 18 Cl -0.05 -1.22 24.13 -51.86 -1.25 -2.47 15 19 C 0.17 3.90 6.34 -83.52 -0.53 3.37 15 20 H 0.27 7.32 8.31 -40.82 -0.34 6.98 15 21 H 0.09 1.89 5.92 -51.93 -0.31 1.59 15 22 H 0.05 1.07 6.20 -51.93 -0.32 0.75 15 23 H 0.06 1.01 8.14 -51.93 -0.42 0.58 15 24 H 0.07 0.96 8.14 -51.93 -0.42 0.54 15 25 H 0.39 5.22 8.90 -40.82 -0.36 4.86 15 26 H 0.11 1.54 8.06 -52.49 -0.42 1.12 15 27 H 0.11 1.55 8.06 -52.48 -0.42 1.12 15 28 H 0.11 1.90 8.06 -52.49 -0.42 1.48 15 LS Contribution 240.11 15.07 3.62 3.62 Total: -1.00 -29.13 240.11 -6.97 -36.10 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -2.62 Total: 3.36 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -2.74 Total: -8.75 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: 0.14 Total: -48.81 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.12 Total: 16.95 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -1.25 Total: -2.47 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -29.13 -6.97 -36.10 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260674630.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.029 kcal (2) G-P(sol) polarization free energy of solvation -29.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds