Wall clock time and date at job start Mon Mar 30 2020 05:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86803 * 119.99883 * 2 1 4 4 H 1.48504 * 109.47042 * 264.93304 * 3 2 1 5 5 H 1.48501 * 109.47264 * 24.92808 * 3 2 1 6 6 H 1.48500 * 109.47327 * 144.92997 * 3 2 1 7 7 C 1.38742 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00232 * 350.29149 * 7 2 1 9 9 N 1.36795 * 120.00022 * 170.29970 * 7 2 1 10 10 C 1.47036 * 120.57978 * 321.12987 * 9 7 2 11 11 C 1.53552 * 108.23776 * 225.03636 * 10 9 7 12 12 N 1.47061 * 108.19018 * 303.42238 * 11 10 9 13 13 C 1.40007 * 118.81600 * 44.77195 * 12 11 10 14 14 C 1.38617 * 120.27854 * 163.19646 * 13 12 11 15 15 C 1.38274 * 119.90616 * 180.02562 * 14 13 12 16 16 C 1.38365 * 120.29810 * 0.25670 * 15 14 13 17 17 C 1.38293 * 120.25181 * 0.02562 * 16 15 14 18 18 Cl 1.73604 * 120.07722 * 180.02562 * 17 16 15 19 19 C 1.38920 * 119.84006 * 0.02562 * 17 16 15 20 20 H 0.97006 * 120.00193 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.71463 * 344.72312 * 10 9 7 22 22 H 1.08998 * 109.71365 * 105.35062 * 10 9 7 23 23 H 1.09001 * 109.71706 * 63.09383 * 11 10 9 24 24 H 1.08994 * 109.72225 * 183.70254 * 11 10 9 25 25 H 0.96998 * 120.62404 * 225.01377 * 12 11 10 26 26 H 1.08000 * 120.04247 * 0.35030 * 14 13 12 27 27 H 1.08004 * 119.85418 * 180.26932 * 15 14 13 28 28 H 1.07997 * 119.87094 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.6048 1.9846 -1.3946 5 1 1.3982 2.6813 0.5901 6 1 3.4901 1.4736 0.8044 7 6 2.0100 -1.2015 -0.0005 8 1 1.4816 -2.1302 0.1568 9 7 3.3633 -1.2099 -0.2002 10 6 3.9813 -0.2990 -1.1750 11 6 4.9983 -1.0985 -2.0022 12 7 5.9633 -1.7104 -1.0765 13 6 5.4849 -2.3336 0.0824 14 6 6.2944 -3.2078 0.7909 15 6 5.8139 -3.8194 1.9341 16 6 4.5258 -3.5671 2.3720 17 6 3.7081 -2.7012 1.6692 18 17 2.0930 -2.3873 2.2230 19 6 4.1823 -2.0830 0.5190 20 1 -0.4851 0.8401 0.0004 21 1 3.2145 0.1115 -1.8321 22 1 4.4890 0.5107 -0.6510 23 1 4.4836 -1.8775 -2.5647 24 1 5.5189 -0.4317 -2.6894 25 1 6.9147 -1.6800 -1.2632 26 1 7.3008 -3.4068 0.4533 27 1 6.4469 -4.4971 2.4879 28 1 4.1577 -4.0483 3.2660 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260674630.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:11 Heat of formation + Delta-G solvation = 35.188151 kcal Electronic energy + Delta-G solvation = -15148.542176 eV Core-core repulsion = 12611.201245 eV Total energy + Delta-G solvation = -2537.340931 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.057 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.95458 -37.68031 -37.05483 -35.68062 -33.78916 -31.52276 -30.44923 -28.35676 -25.49999 -24.75661 -22.92952 -21.12310 -19.24848 -18.36409 -17.69484 -17.13286 -16.53337 -15.61852 -15.41716 -15.02678 -14.85287 -14.55368 -14.24433 -14.06076 -13.78680 -13.00990 -12.71949 -12.47476 -12.28414 -12.14067 -11.97244 -11.89128 -11.44057 -10.65238 -10.38351 -10.25992 -8.61460 -8.27259 -7.84521 -5.70766 0.65067 0.88285 1.19727 1.34357 1.38323 1.84307 2.26859 2.62154 2.94091 2.97162 3.26222 4.05442 4.15865 4.27261 4.36025 4.44626 4.59925 4.71750 4.79521 4.93541 5.10170 5.37318 5.47853 5.81480 5.86053 6.03417 6.18990 6.45314 6.79409 7.13756 7.36478 7.66848 8.86331 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.024631 B = 0.013994 C = 0.009782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.494172 B = 2000.348757 C = 2861.791432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.933 3.067 4 H -0.251 1.251 5 H -0.302 1.302 6 H -0.277 1.277 7 C -0.269 4.269 8 H 0.080 0.920 9 N -0.504 5.504 10 C 0.074 3.926 11 C 0.123 3.877 12 N -0.746 5.746 13 C 0.116 3.884 14 C -0.139 4.139 15 C -0.146 4.146 16 C -0.124 4.124 17 C -0.110 4.110 18 Cl -0.078 7.078 19 C 0.134 3.866 20 H 0.268 0.732 21 H 0.081 0.919 22 H 0.046 0.954 23 H 0.052 0.948 24 H 0.122 0.878 25 H 0.414 0.586 26 H 0.151 0.849 27 H 0.152 0.848 28 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.039 -3.125 -1.301 14.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.761 3.239 4 H -0.176 1.176 5 H -0.230 1.230 6 H -0.203 1.203 7 C -0.398 4.398 8 H 0.098 0.902 9 N -0.203 5.203 10 C -0.050 4.050 11 C -0.004 4.004 12 N -0.383 5.383 13 C 0.011 3.989 14 C -0.163 4.163 15 C -0.168 4.168 16 C -0.145 4.145 17 C -0.143 4.143 18 Cl -0.049 7.049 19 C 0.024 3.976 20 H 0.078 0.922 21 H 0.099 0.901 22 H 0.064 0.936 23 H 0.070 0.930 24 H 0.139 0.861 25 H 0.251 0.749 26 H 0.168 0.832 27 H 0.170 0.830 28 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 13.414 -2.757 -1.509 13.777 hybrid contribution -0.396 1.053 0.214 1.145 sum 13.017 -1.704 -1.295 13.192 Atomic orbital electron populations 1.69840 1.07138 1.27746 1.52386 1.25857 0.95719 1.00431 0.97524 0.86138 0.78037 0.80428 0.79307 1.17561 1.23007 1.20253 1.19074 0.80646 0.94755 1.45325 0.90193 1.42505 1.04027 1.37112 1.36628 1.22466 0.97066 0.93221 0.92271 1.21771 0.90765 0.96662 0.91172 1.44154 1.08334 1.64264 1.21533 1.17430 0.92054 0.98344 0.91046 1.20693 1.00502 0.97670 0.97395 1.20774 0.94771 1.03151 0.98093 1.20805 0.94541 0.98733 1.00386 1.20475 0.88624 1.07408 0.97839 1.98336 1.22459 1.95253 1.88875 1.17868 0.91220 0.96798 0.91751 0.92232 0.90104 0.93644 0.93018 0.86050 0.74866 0.83187 0.83040 0.85251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.87 13.97 21.64 0.30 -55.57 15 2 C 0.00 0.17 5.36 84.84 0.45 0.63 15 3 Si 0.93 44.60 24.23 68.60 1.66 46.26 15 4 H -0.25 -10.66 6.66 99.48 0.66 -10.00 15 5 H -0.30 -14.71 7.11 99.48 0.71 -14.00 15 6 H -0.28 -13.46 6.62 99.48 0.66 -12.80 15 7 C -0.27 -14.92 6.97 84.04 0.59 -14.33 15 8 H 0.08 4.91 6.27 -2.91 -0.02 4.89 15 9 N -0.50 -24.30 2.63 -508.95 -1.34 -25.64 15 10 C 0.07 2.98 4.32 86.46 0.37 3.35 15 11 C 0.12 3.67 7.28 86.46 0.63 4.29 15 12 N -0.75 -21.58 5.83 -336.61 -1.96 -23.55 15 13 C 0.12 4.13 6.53 38.27 0.25 4.38 15 14 C -0.14 -4.05 9.93 22.37 0.22 -3.82 15 15 C -0.15 -4.27 10.04 22.31 0.22 -4.04 15 16 C -0.12 -4.40 9.82 22.31 0.22 -4.18 15 17 C -0.11 -4.86 6.29 22.45 0.14 -4.72 15 18 Cl -0.08 -3.77 24.13 -2.72 -0.07 -3.83 15 19 C 0.13 5.96 6.34 38.40 0.24 6.20 15 20 H 0.27 15.29 8.31 -92.70 -0.77 14.51 15 21 H 0.08 3.33 5.92 -2.39 -0.01 3.32 15 22 H 0.05 1.84 6.20 -2.39 -0.01 1.83 15 23 H 0.05 1.65 8.14 -2.39 -0.02 1.63 15 24 H 0.12 2.52 8.14 -2.39 -0.02 2.50 15 25 H 0.41 8.71 8.90 -92.71 -0.83 7.89 15 26 H 0.15 3.17 8.06 -2.91 -0.02 3.15 15 27 H 0.15 3.23 8.06 -2.91 -0.02 3.20 15 28 H 0.13 4.08 8.06 -2.91 -0.02 4.06 15 Total: -1.00 -66.61 240.11 2.22 -64.39 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 0.28 Total: 10.17 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: 3.34 Total: -12.24 kcal Atomic # 7 Polarization: -101.76 SS G_CDS: -2.99 Total: -104.75 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.66 Total: 46.26 kcal Atomic # 17 Polarization: -3.77 SS G_CDS: -0.07 Total: -3.83 kcal Total: -66.61 2.22 -64.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260674630.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.580 kcal (2) G-P(sol) polarization free energy of solvation -66.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds