Wall clock time and date at job start Mon Mar 30 2020 05:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32624 * 125.17286 * 2 1 4 4 C 1.40123 * 115.63544 * 180.02562 * 3 2 1 5 5 C 1.33826 * 113.70538 * 0.06587 * 4 3 2 6 6 S 1.75580 * 125.17653 * 180.02562 * 2 1 3 7 7 C 1.52110 * 110.67520 * 179.90486 * 5 4 3 8 8 C 1.54219 * 104.84328 * 342.58783 * 7 5 4 9 9 H 1.09005 * 111.01058 * 268.36288 * 8 7 5 10 10 C 1.52995 * 110.97820 * 144.59217 * 8 7 5 11 11 C 1.52790 * 136.54093 * 180.02562 * 4 3 2 12 12 O 1.42901 * 110.32463 * 78.69499 * 11 4 3 13 13 C 1.50699 * 110.32520 * 316.48279 * 11 4 3 14 14 H 1.08003 * 119.99995 * 244.37332 * 13 11 4 15 15 C 1.37878 * 120.00347 * 64.37438 * 13 11 4 16 16 N 1.31512 * 119.99638 * 359.97438 * 15 13 11 17 17 Si 1.86795 * 120.00146 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47061 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.46900 * 119.99721 * 17 15 13 20 20 H 1.48502 * 109.47112 * 239.99797 * 17 15 13 21 21 H 1.09004 * 109.47280 * 90.00078 * 1 2 3 22 22 H 1.09000 * 109.47121 * 210.00118 * 1 2 3 23 23 H 1.09000 * 109.46974 * 330.00002 * 1 2 3 24 24 H 1.08001 * 122.18456 * 0.05616 * 3 2 1 25 25 H 1.09007 * 110.36520 * 223.75067 * 7 5 4 26 26 H 1.08999 * 110.45948 * 101.47669 * 7 5 4 27 27 H 1.09008 * 109.47092 * 307.66290 * 10 8 7 28 28 H 1.09002 * 109.47299 * 67.66111 * 10 8 7 29 29 H 1.09004 * 109.47343 * 187.66486 * 10 8 7 30 30 H 0.96701 * 113.99809 * 295.62138 * 12 11 4 31 31 H 0.97003 * 120.00091 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2710 1.0841 0.0000 4 6 3.6529 0.8519 -0.0006 5 6 3.9804 -0.4456 -0.0024 6 16 2.5186 -1.4352 -0.0006 7 6 5.4917 -0.6180 -0.0053 8 6 6.0447 0.7509 -0.4510 9 1 6.1757 0.7861 -1.5326 10 6 7.3567 1.0720 0.2675 11 6 4.9207 1.7046 -0.0003 12 8 5.1864 2.1986 1.3140 13 6 4.7829 2.8477 -0.9726 14 1 5.4291 2.9030 -1.8362 15 6 3.8320 3.8231 -0.7596 16 7 3.0448 3.7555 0.2918 17 14 3.6607 5.2397 -1.9651 18 1 4.6567 5.0847 -3.0557 19 1 2.2917 5.2373 -2.5404 20 1 3.8980 6.5234 -1.2573 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.8552 2.0809 0.0009 25 1 5.7837 -1.3938 -0.7133 26 1 5.8490 -0.8641 0.9946 27 1 7.2175 0.9645 1.3433 28 1 8.1329 0.3846 -0.0689 29 1 7.6544 2.0957 0.0402 30 1 4.5118 2.8045 1.6502 31 1 2.3755 4.4415 0.4415 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260676452.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:51 Heat of formation + Delta-G solvation = -34.193299 kcal Electronic energy + Delta-G solvation = -15429.187423 eV Core-core repulsion = 12994.421936 eV Total energy + Delta-G solvation = -2434.765487 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.61673 -36.92678 -35.39933 -34.05772 -32.19699 -29.27273 -28.74053 -25.45322 -24.84661 -22.44153 -20.49543 -19.55393 -18.79072 -17.63789 -17.02197 -16.10375 -15.42668 -15.13633 -14.91111 -14.59355 -14.19079 -13.89797 -13.68579 -13.33068 -13.13725 -12.90138 -12.78072 -12.46585 -12.34667 -12.26577 -12.17043 -11.80971 -11.67723 -11.58796 -10.99785 -10.43313 -10.12192 -9.07610 -8.89190 -8.16982 -6.31880 0.35342 0.82841 1.27307 1.37615 1.41845 1.51069 2.16233 2.39620 3.06390 3.79825 4.01736 4.17701 4.24255 4.43051 4.53646 4.73732 4.75394 4.77022 4.87467 4.96722 5.08716 5.17787 5.26185 5.38469 5.39205 5.56913 5.71438 5.83302 5.89309 6.03851 6.22647 6.71512 7.35894 7.47559 8.84900 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.020435 B = 0.012913 C = 0.008820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.855042 B = 2167.900815 C = 3173.749856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.214 4.214 3 C -0.114 4.114 4 C -0.105 4.105 5 C -0.249 4.249 6 S 0.086 5.914 7 C -0.026 4.026 8 C -0.078 4.078 9 H 0.075 0.925 10 C -0.112 4.112 11 C 0.290 3.710 12 O -0.584 6.584 13 C -0.552 4.552 14 H 0.053 0.947 15 C 0.035 3.965 16 N -0.900 5.900 17 Si 0.952 3.048 18 H -0.274 1.274 19 H -0.280 1.280 20 H -0.279 1.279 21 H 0.078 0.922 22 H 0.082 0.918 23 H 0.073 0.927 24 H 0.142 0.858 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.042 0.958 30 H 0.373 0.627 31 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.451 -7.128 -0.646 7.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.330 4.330 3 C -0.144 4.144 4 C -0.117 4.117 5 C -0.365 4.365 6 S 0.350 5.650 7 C -0.065 4.065 8 C -0.098 4.098 9 H 0.094 0.906 10 C -0.169 4.169 11 C 0.248 3.752 12 O -0.392 6.392 13 C -0.590 4.590 14 H 0.071 0.929 15 C -0.165 4.165 16 N -0.540 5.540 17 Si 0.778 3.222 18 H -0.199 1.199 19 H -0.206 1.206 20 H -0.204 1.204 21 H 0.097 0.903 22 H 0.101 0.899 23 H 0.092 0.908 24 H 0.159 0.841 25 H 0.103 0.897 26 H 0.096 0.904 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.061 0.939 30 H 0.222 0.778 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.379 -8.985 -0.618 9.112 hybrid contribution -0.545 2.971 -0.515 3.064 sum -1.925 -6.015 -1.133 6.416 Atomic orbital electron populations 1.20288 0.85933 1.03392 1.03035 1.24587 1.01014 0.94880 1.12481 1.20476 0.93043 1.00312 1.00569 1.21692 0.96214 0.95139 0.98617 1.26102 1.00464 0.97148 1.12782 1.82960 0.95273 1.08791 1.77971 1.20834 0.86136 0.97791 1.01766 1.21848 0.95417 0.93105 0.99439 0.90644 1.21347 0.94864 1.00790 0.99892 1.18359 0.86008 0.89558 0.81230 1.86122 1.52304 1.66723 1.34037 1.22013 1.18198 1.08993 1.09753 0.92892 1.25587 0.94343 0.99720 0.96873 1.69688 1.21249 1.34729 1.28342 0.85602 0.77784 0.79457 0.79311 1.19886 1.20556 1.20446 0.90332 0.89946 0.90810 0.84119 0.89703 0.90391 0.93135 0.90982 0.93854 0.77764 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.99 10.37 71.24 0.74 -1.25 16 2 C -0.21 -8.38 6.47 24.52 0.16 -8.22 16 3 C -0.11 -5.42 9.17 21.57 0.20 -5.22 16 4 C -0.10 -5.12 5.27 -19.73 -0.10 -5.22 16 5 C -0.25 -10.69 7.35 25.13 0.18 -10.50 16 6 S 0.09 3.13 23.33 -56.49 -1.32 1.81 16 7 C -0.03 -0.97 6.36 30.71 0.20 -0.78 16 8 C -0.08 -3.29 3.14 -10.00 -0.03 -3.32 16 9 H 0.08 3.16 7.79 -2.38 -0.02 3.14 16 10 C -0.11 -4.13 8.61 71.98 0.62 -3.51 16 11 C 0.29 14.56 0.76 -11.23 -0.01 14.55 16 12 O -0.58 -30.65 11.55 -148.98 -1.72 -32.37 16 13 C -0.55 -29.76 8.24 25.60 0.21 -29.55 16 14 H 0.05 2.87 7.61 -2.91 -0.02 2.85 16 15 C 0.03 1.83 5.10 84.66 0.43 2.26 16 16 N -0.90 -47.04 8.29 21.45 0.18 -46.86 16 17 Si 0.95 42.17 29.54 68.60 2.03 44.20 16 18 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 19 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 20 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 21 H 0.08 2.08 8.14 -2.38 -0.02 2.07 16 22 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 23 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 24 H 0.14 7.19 5.67 -2.91 -0.02 7.18 16 25 H 0.08 2.70 8.14 -2.38 -0.02 2.68 16 26 H 0.08 2.81 7.83 -2.39 -0.02 2.79 16 27 H 0.05 1.93 7.41 -2.38 -0.02 1.91 16 28 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.37 20.44 7.05 -74.06 -0.52 19.92 16 31 H 0.27 13.33 8.31 -92.71 -0.77 12.56 16 Total: -1.00 -57.71 265.38 2.38 -55.33 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: 0.62 Total: 28.66 kcal Atomic # 6 Polarization: -53.36 SS G_CDS: 2.59 Total: -50.77 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: 0.18 Total: -46.86 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -1.72 Total: -32.37 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Atomic # 16 Polarization: 3.13 SS G_CDS: -1.32 Total: 1.81 kcal Total: -57.71 2.38 -55.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260676452.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.138 kcal (2) G-P(sol) polarization free energy of solvation -57.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds