Wall clock time and date at job start Mon Mar 30 2020 05:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32630 * 125.17253 * 2 1 4 4 C 1.40124 * 115.63271 * 180.02562 * 3 2 1 5 5 C 1.33823 * 113.70683 * 0.02972 * 4 3 2 6 6 S 1.75578 * 125.17648 * 180.02562 * 2 1 3 7 7 C 1.52115 * 110.67538 * 179.97438 * 5 4 3 8 8 C 1.54213 * 104.84019 * 342.58168 * 7 5 4 9 9 H 1.09002 * 110.97805 * 144.59285 * 8 7 5 10 10 C 1.53000 * 110.97281 * 268.36643 * 8 7 5 11 11 C 1.52789 * 136.53876 * 180.02562 * 4 3 2 12 12 O 1.42905 * 110.33023 * 78.60071 * 11 4 3 13 13 C 1.50699 * 110.41186 * 316.43371 * 11 4 3 14 14 H 1.07994 * 120.00586 * 247.57151 * 13 11 4 15 15 C 1.37878 * 119.99983 * 67.56771 * 13 11 4 16 16 N 1.31520 * 120.00108 * 0.02562 * 15 13 11 17 17 Si 1.86806 * 120.00458 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.46791 * 59.99847 * 17 15 13 19 19 H 1.48493 * 109.47188 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.46668 * 300.00152 * 17 15 13 21 21 H 1.09005 * 109.46959 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47375 * 299.98774 * 1 2 3 23 23 H 1.08999 * 109.46843 * 59.98633 * 1 2 3 24 24 H 1.07997 * 122.18628 * 359.97438 * 3 2 1 25 25 H 1.08998 * 110.36909 * 223.73205 * 7 5 4 26 26 H 1.09003 * 110.35904 * 101.42137 * 7 5 4 27 27 H 1.09001 * 109.47390 * 180.24021 * 10 8 7 28 28 H 1.08997 * 109.47198 * 300.23627 * 10 8 7 29 29 H 1.09003 * 109.47271 * 60.24050 * 10 8 7 30 30 H 0.96700 * 113.99936 * 295.63477 * 12 11 4 31 31 H 0.96991 * 120.00729 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2710 1.0841 0.0000 4 6 3.6529 0.8519 -0.0006 5 6 3.9804 -0.4456 -0.0017 6 16 2.5185 -1.4351 -0.0006 7 6 5.4918 -0.6180 -0.0028 8 6 6.0451 0.7507 -0.4486 9 1 6.9793 0.9797 0.0642 10 6 6.2302 0.7985 -1.9666 11 6 4.9207 1.7046 -0.0003 12 8 5.1853 2.2005 1.3135 13 6 4.7855 2.8477 -0.9729 14 1 5.3972 2.8752 -1.8625 15 6 3.8807 3.8587 -0.7270 16 7 3.1361 3.8255 0.3566 17 14 3.7125 5.2754 -1.9329 18 1 3.3099 4.7491 -3.2618 19 1 2.6803 6.2234 -1.4419 20 1 5.0140 5.9802 -2.0531 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5136 0.8901 23 1 -0.3633 0.5140 -0.8899 24 1 1.8553 2.0809 -0.0004 25 1 5.7845 -1.3942 -0.7099 26 1 5.8463 -0.8627 0.9984 27 1 6.6254 1.7729 -2.2539 28 1 6.9279 0.0190 -2.2723 29 1 5.2690 0.6379 -2.4551 30 1 4.5104 2.8066 1.6484 31 1 2.4993 4.5364 0.5294 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260676453.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:53 Heat of formation + Delta-G solvation = -31.186852 kcal Electronic energy + Delta-G solvation = -15492.345531 eV Core-core repulsion = 13057.710413 eV Total energy + Delta-G solvation = -2434.635118 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.69944 -36.90391 -35.51713 -34.07930 -32.11079 -29.59088 -28.13506 -25.43481 -25.27191 -22.48450 -20.47963 -19.36926 -18.59003 -17.85179 -17.04524 -16.16786 -15.43699 -15.26137 -14.91175 -14.56470 -14.35184 -13.81552 -13.64366 -13.21887 -13.01840 -12.89885 -12.70261 -12.65167 -12.44950 -12.24789 -12.04478 -11.73961 -11.64418 -11.53077 -11.10367 -10.43103 -10.09747 -9.07562 -8.89577 -8.14320 -6.26992 0.34710 0.82502 1.25613 1.41868 1.43038 1.49428 2.14652 2.41631 3.10333 3.77586 3.97938 4.17192 4.22659 4.50145 4.54317 4.71871 4.75507 4.76802 4.87792 5.02432 5.10079 5.14134 5.23383 5.32612 5.45255 5.52748 5.65937 5.85474 5.86716 6.01997 6.24917 6.76602 7.39988 7.51112 8.89169 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.022235 B = 0.012329 C = 0.009298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.998540 B = 2270.482751 C = 3010.766658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.211 4.211 3 C -0.115 4.115 4 C -0.102 4.102 5 C -0.246 4.246 6 S 0.092 5.908 7 C -0.026 4.026 8 C -0.078 4.078 9 H 0.077 0.923 10 C -0.114 4.114 11 C 0.286 3.714 12 O -0.597 6.597 13 C -0.550 4.550 14 H 0.073 0.927 15 C 0.031 3.969 16 N -0.907 5.907 17 Si 0.952 3.048 18 H -0.276 1.276 19 H -0.283 1.283 20 H -0.274 1.274 21 H 0.082 0.918 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.133 0.867 25 H 0.088 0.912 26 H 0.074 0.926 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.038 0.962 30 H 0.377 0.623 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.917 -7.552 -2.034 8.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.327 4.327 3 C -0.144 4.144 4 C -0.114 4.114 5 C -0.362 4.362 6 S 0.355 5.645 7 C -0.066 4.066 8 C -0.098 4.098 9 H 0.095 0.905 10 C -0.171 4.171 11 C 0.244 3.756 12 O -0.407 6.407 13 C -0.588 4.588 14 H 0.091 0.909 15 C -0.169 4.169 16 N -0.548 5.548 17 Si 0.778 3.222 18 H -0.201 1.201 19 H -0.209 1.209 20 H -0.200 1.200 21 H 0.101 0.899 22 H 0.095 0.905 23 H 0.094 0.906 24 H 0.150 0.850 25 H 0.107 0.893 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.058 0.942 30 H 0.229 0.771 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.850 -9.398 -2.001 9.785 hybrid contribution -0.518 3.023 -0.286 3.081 sum -2.369 -6.375 -2.287 7.175 Atomic orbital electron populations 1.20283 0.85905 1.03372 1.03053 1.24554 1.00997 0.94914 1.12193 1.20208 0.93078 0.99902 1.01263 1.21634 0.96027 0.95159 0.98616 1.26049 1.00393 0.97052 1.12660 1.82976 0.95143 1.08615 1.77718 1.20828 0.86321 0.97876 1.01551 1.21708 0.97602 0.93235 0.97290 0.90487 1.21566 1.00766 1.01477 0.93247 1.18477 0.86239 0.89825 0.81022 1.86093 1.53053 1.66961 1.34636 1.22207 1.21335 1.06857 1.08397 0.90917 1.25648 0.94450 0.99947 0.96838 1.69604 1.24453 1.33937 1.26834 0.85717 0.77753 0.79307 0.79439 1.20136 1.20875 1.19984 0.89907 0.90548 0.90577 0.84988 0.89320 0.90807 0.92638 0.90862 0.94247 0.77148 0.92304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.95 10.37 71.24 0.74 -1.22 16 2 C -0.21 -8.17 6.47 24.52 0.16 -8.01 16 3 C -0.11 -5.40 9.28 21.56 0.20 -5.20 16 4 C -0.10 -4.98 5.29 -19.73 -0.10 -5.08 16 5 C -0.25 -10.42 7.35 25.14 0.18 -10.24 16 6 S 0.09 3.28 23.33 -56.49 -1.32 1.96 16 7 C -0.03 -0.99 6.35 30.71 0.19 -0.79 16 8 C -0.08 -3.29 3.30 -10.01 -0.03 -3.32 16 9 H 0.08 3.17 8.11 -2.39 -0.02 3.15 16 10 C -0.11 -4.21 7.95 71.98 0.57 -3.64 16 11 C 0.29 14.41 0.82 -11.23 -0.01 14.40 16 12 O -0.60 -32.58 13.04 -148.98 -1.94 -34.52 16 13 C -0.55 -29.12 7.67 25.60 0.20 -28.92 16 14 H 0.07 3.74 5.25 -2.91 -0.02 3.73 16 15 C 0.03 1.61 5.11 84.65 0.43 2.04 16 16 N -0.91 -47.99 8.57 21.45 0.18 -47.81 16 17 Si 0.95 42.09 29.54 68.60 2.03 44.12 16 18 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 19 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 21 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 22 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 23 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 24 H 0.13 6.74 6.04 -2.91 -0.02 6.73 16 25 H 0.09 2.78 7.92 -2.39 -0.02 2.76 16 26 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 27 H 0.05 2.12 6.50 -2.39 -0.02 2.10 16 28 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.04 1.57 8.06 -2.39 -0.02 1.55 16 30 H 0.38 21.27 6.79 -74.06 -0.50 20.77 16 31 H 0.27 13.55 8.31 -92.72 -0.77 12.78 16 Total: -1.00 -58.20 263.43 2.13 -56.07 By element: Atomic # 1 Polarization: 29.52 SS G_CDS: 0.64 Total: 30.16 kcal Atomic # 6 Polarization: -52.51 SS G_CDS: 2.53 Total: -49.98 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: 0.18 Total: -47.81 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -1.94 Total: -34.52 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Atomic # 16 Polarization: 3.28 SS G_CDS: -1.32 Total: 1.96 kcal Total: -58.20 2.13 -56.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260676453.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.884 kcal (2) G-P(sol) polarization free energy of solvation -58.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds