Wall clock time and date at job start Mon Mar 30 2020 05:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32632 * 125.17432 * 2 1 4 4 C 1.40116 * 115.63495 * 179.87240 * 3 2 1 5 5 C 1.33821 * 113.70637 * 0.39009 * 4 3 2 6 6 S 1.75576 * 125.17604 * 180.30758 * 2 1 3 7 7 C 1.52113 * 110.67962 * 179.81629 * 5 4 3 8 8 C 1.54223 * 104.83746 * 17.42303 * 7 5 4 9 9 H 1.08999 * 110.97730 * 91.66541 * 8 7 5 10 10 C 1.53001 * 110.97664 * 215.40789 * 8 7 5 11 11 C 1.52792 * 136.54331 * 180.02562 * 4 3 2 12 12 O 1.42905 * 110.40823 * 281.71691 * 11 4 3 13 13 C 1.50705 * 110.32492 * 43.87795 * 11 4 3 14 14 H 1.07996 * 119.99955 * 115.63505 * 13 11 4 15 15 C 1.37877 * 119.99974 * 295.63367 * 13 11 4 16 16 N 1.31509 * 120.00144 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 119.99585 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.47446 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46777 * 120.00134 * 17 15 13 20 20 H 1.48500 * 109.47062 * 239.99619 * 17 15 13 21 21 H 1.09002 * 109.47152 * 179.71900 * 1 2 3 22 22 H 1.09001 * 109.46980 * 59.72000 * 1 2 3 23 23 H 1.09004 * 109.47113 * 299.71981 * 1 2 3 24 24 H 1.08004 * 122.18019 * 0.04347 * 3 2 1 25 25 H 1.08996 * 110.36658 * 136.26169 * 7 5 4 26 26 H 1.09001 * 110.36763 * 258.58640 * 7 5 4 27 27 H 1.09001 * 109.47021 * 58.54589 * 10 8 7 28 28 H 1.09002 * 109.47191 * 178.54656 * 10 8 7 29 29 H 1.09002 * 109.47058 * 298.54227 * 10 8 7 30 30 H 0.96693 * 114.00217 * 64.31876 * 12 11 4 31 31 H 0.97001 * 119.99825 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2711 1.0841 0.0000 4 6 3.6529 0.8519 0.0028 5 6 3.9804 -0.4456 -0.0033 6 16 2.5185 -1.4351 -0.0077 7 6 5.4917 -0.6181 -0.0043 8 6 6.0455 0.7483 0.4483 9 1 6.1788 0.7764 1.5298 10 6 7.3562 1.0736 -0.2709 11 6 4.9208 1.7045 0.0045 12 8 5.1850 2.2072 -1.3069 13 6 4.7849 2.8428 0.9828 14 1 5.4328 2.8937 1.8454 15 6 3.8335 3.8191 0.7767 16 7 3.0449 3.7574 -0.2740 17 14 3.6647 5.2296 1.9897 18 1 4.6628 5.0692 3.0774 19 1 3.9006 6.5169 1.2879 20 1 2.2968 5.2243 2.5677 21 1 -0.3633 -1.0277 -0.0050 22 1 -0.3633 0.5182 -0.8875 23 1 -0.3633 0.5095 0.8925 24 1 1.8552 2.0809 0.0007 25 1 5.7850 -1.3979 0.6985 26 1 5.8456 -0.8573 -1.0071 27 1 7.1877 1.0802 -1.3478 28 1 7.7117 2.0536 0.0474 29 1 8.1028 0.3186 -0.0245 30 1 4.5099 2.8147 -1.6387 31 1 2.3758 4.4446 -0.4192 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260676454.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:56 Heat of formation + Delta-G solvation = -34.063071 kcal Electronic energy + Delta-G solvation = -15429.023675 eV Core-core repulsion = 12994.263835 eV Total energy + Delta-G solvation = -2434.759840 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.61508 -36.92586 -35.39728 -34.05630 -32.19702 -29.26993 -28.74567 -25.45350 -24.84538 -22.43491 -20.49197 -19.54841 -18.79046 -17.63780 -17.02341 -16.10530 -15.41867 -15.14874 -14.91381 -14.58780 -14.20340 -13.91189 -13.69918 -13.32698 -13.13139 -12.89757 -12.76048 -12.46620 -12.35447 -12.27037 -12.17221 -11.81131 -11.66954 -11.58005 -10.99674 -10.43254 -10.12200 -9.06633 -8.89699 -8.16879 -6.31728 0.35468 0.83311 1.26761 1.37605 1.41853 1.51090 2.16143 2.39668 3.06499 3.79735 4.01618 4.18173 4.25224 4.42190 4.52830 4.73678 4.75962 4.77211 4.87711 4.96546 5.08050 5.17652 5.26630 5.38108 5.39411 5.56840 5.72413 5.83826 5.89705 6.04092 6.22813 6.71589 7.35986 7.47672 8.85012 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.020438 B = 0.012909 C = 0.008820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.669310 B = 2168.457301 C = 3173.991167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.213 4.213 3 C -0.116 4.116 4 C -0.104 4.104 5 C -0.250 4.250 6 S 0.087 5.913 7 C -0.026 4.026 8 C -0.078 4.078 9 H 0.075 0.925 10 C -0.113 4.113 11 C 0.290 3.710 12 O -0.583 6.583 13 C -0.552 4.552 14 H 0.053 0.947 15 C 0.035 3.965 16 N -0.900 5.900 17 Si 0.952 3.048 18 H -0.274 1.274 19 H -0.279 1.279 20 H -0.280 1.280 21 H 0.081 0.919 22 H 0.076 0.924 23 H 0.075 0.925 24 H 0.142 0.858 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.050 0.950 28 H 0.043 0.957 29 H 0.072 0.928 30 H 0.373 0.627 31 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.467 -7.139 0.571 7.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.329 4.329 3 C -0.145 4.145 4 C -0.116 4.116 5 C -0.366 4.366 6 S 0.351 5.649 7 C -0.065 4.065 8 C -0.098 4.098 9 H 0.093 0.907 10 C -0.171 4.171 11 C 0.248 3.752 12 O -0.392 6.392 13 C -0.590 4.590 14 H 0.071 0.929 15 C -0.165 4.165 16 N -0.540 5.540 17 Si 0.778 3.222 18 H -0.199 1.199 19 H -0.204 1.204 20 H -0.206 1.206 21 H 0.100 0.900 22 H 0.095 0.905 23 H 0.093 0.907 24 H 0.159 0.841 25 H 0.103 0.897 26 H 0.096 0.904 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.222 0.778 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.396 -8.997 0.535 9.121 hybrid contribution -0.540 2.968 0.533 3.063 sum -1.936 -6.030 1.068 6.422 Atomic orbital electron populations 1.20273 0.85942 1.03302 1.03025 1.24593 1.00994 0.94862 1.12459 1.20451 0.93040 1.00370 1.00668 1.21679 0.96194 0.95121 0.98603 1.26101 1.00471 0.97163 1.12830 1.82966 0.95272 1.08834 1.77853 1.20831 0.86140 0.97816 1.01742 1.21845 0.95412 0.93107 0.99420 0.90695 1.21359 0.94849 1.00746 1.00102 1.18352 0.86019 0.89521 0.81280 1.86117 1.52267 1.66397 1.34390 1.22013 1.18100 1.09166 1.09672 0.92913 1.25584 0.94340 0.99679 0.96913 1.69683 1.21219 1.34669 1.28438 0.85603 0.77781 0.79447 0.79328 1.19898 1.20448 1.20554 0.89982 0.90513 0.90664 0.84100 0.89690 0.90399 0.93077 0.93774 0.90951 0.77763 0.92165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.96 10.37 71.24 0.74 -1.22 16 2 C -0.21 -8.36 6.47 24.52 0.16 -8.20 16 3 C -0.12 -5.48 9.17 21.56 0.20 -5.28 16 4 C -0.10 -5.09 5.27 -19.74 -0.10 -5.19 16 5 C -0.25 -10.72 7.35 25.13 0.18 -10.53 16 6 S 0.09 3.15 23.33 -56.49 -1.32 1.83 16 7 C -0.03 -0.97 6.36 30.72 0.20 -0.78 16 8 C -0.08 -3.28 3.14 -9.99 -0.03 -3.31 16 9 H 0.07 3.14 7.80 -2.39 -0.02 3.12 16 10 C -0.11 -4.19 8.74 71.98 0.63 -3.56 16 11 C 0.29 14.55 0.76 -11.22 -0.01 14.54 16 12 O -0.58 -30.62 11.40 -148.98 -1.70 -32.32 16 13 C -0.55 -29.77 8.24 25.60 0.21 -29.56 16 14 H 0.05 2.86 7.62 -2.91 -0.02 2.84 16 15 C 0.04 1.83 5.10 84.66 0.43 2.26 16 16 N -0.90 -47.04 8.28 21.45 0.18 -46.87 16 17 Si 0.95 42.19 29.54 68.60 2.03 44.22 16 18 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 19 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 20 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 21 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 22 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 23 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 24 H 0.14 7.20 5.67 -2.91 -0.02 7.19 16 25 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 26 H 0.08 2.80 7.90 -2.39 -0.02 2.78 16 27 H 0.05 1.99 7.21 -2.39 -0.02 1.97 16 28 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.37 20.43 7.04 -74.06 -0.52 19.91 16 31 H 0.27 13.33 8.31 -92.71 -0.77 12.56 16 Total: -1.00 -57.71 265.24 2.41 -55.30 By element: Atomic # 1 Polarization: 28.05 SS G_CDS: 0.62 Total: 28.67 kcal Atomic # 6 Polarization: -53.43 SS G_CDS: 2.60 Total: -50.83 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: 0.18 Total: -46.87 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -1.70 Total: -32.32 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Atomic # 16 Polarization: 3.15 SS G_CDS: -1.32 Total: 1.83 kcal Total: -57.71 2.41 -55.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260676454.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.237 kcal (2) G-P(sol) polarization free energy of solvation -57.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds