Wall clock time and date at job start Mon Mar 30 2020 05:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32625 * 125.17380 * 2 1 4 4 C 1.40117 * 115.63451 * 180.02562 * 3 2 1 5 5 C 1.33830 * 113.70846 * 0.07575 * 4 3 2 6 6 S 1.75588 * 125.17468 * 180.02562 * 2 1 3 7 7 C 1.52117 * 110.67198 * 179.90204 * 5 4 3 8 8 C 1.54213 * 104.84538 * 342.58639 * 7 5 4 9 9 H 1.09002 * 110.97571 * 268.37412 * 8 7 5 10 10 C 1.52997 * 110.97941 * 144.59240 * 8 7 5 11 11 C 1.52793 * 136.53983 * 180.02562 * 4 3 2 12 12 O 1.42906 * 110.41300 * 316.53286 * 11 4 3 13 13 C 1.50705 * 110.32504 * 78.69763 * 11 4 3 14 14 H 1.07993 * 119.99881 * 26.63174 * 13 11 4 15 15 C 1.37879 * 119.99761 * 206.90356 * 13 11 4 16 16 N 1.31511 * 120.00203 * 359.72603 * 15 13 11 17 17 Si 1.86807 * 119.99606 * 179.72502 * 15 13 11 18 18 H 1.48497 * 109.47106 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.46883 * 120.00047 * 17 15 13 20 20 H 1.48499 * 109.46862 * 240.00235 * 17 15 13 21 21 H 1.09003 * 109.47667 * 89.99660 * 1 2 3 22 22 H 1.08999 * 109.47097 * 209.99284 * 1 2 3 23 23 H 1.08994 * 109.47330 * 329.99314 * 1 2 3 24 24 H 1.07998 * 122.18037 * 0.06151 * 3 2 1 25 25 H 1.09005 * 110.35767 * 223.74409 * 7 5 4 26 26 H 1.09003 * 110.36142 * 101.43124 * 7 5 4 27 27 H 1.09004 * 109.46970 * 310.19456 * 10 8 7 28 28 H 1.09003 * 109.47218 * 70.19151 * 10 8 7 29 29 H 1.08998 * 109.47454 * 190.18943 * 10 8 7 30 30 H 0.96694 * 113.99967 * 62.88394 * 12 11 4 31 31 H 0.97003 * 119.99640 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2710 1.0841 0.0000 4 6 3.6528 0.8519 -0.0006 5 6 3.9804 -0.4457 -0.0026 6 16 2.5185 -1.4353 -0.0006 7 6 5.4918 -0.6180 -0.0056 8 6 6.0446 0.7510 -0.4511 9 1 6.1752 0.7858 -1.5327 10 6 7.3566 1.0721 0.2675 11 6 4.9207 1.7045 -0.0003 12 8 4.7916 2.7899 -0.9209 13 6 5.2009 2.2255 1.3858 14 1 4.8485 1.6805 2.2489 15 6 5.9023 3.4009 1.5517 16 7 6.3315 4.0646 0.5005 17 14 6.2430 4.0507 3.2696 18 1 5.6577 3.1262 4.2736 19 1 7.7097 4.1470 3.4805 20 1 5.6317 5.3956 3.4204 21 1 -0.3634 0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5137 23 1 -0.3634 0.8899 0.5139 24 1 1.8552 2.0808 0.0010 25 1 5.7837 -1.3937 -0.7136 26 1 5.8475 -0.8633 0.9952 27 1 7.2301 0.9210 1.3395 28 1 8.1435 0.4144 -0.1018 29 1 7.6310 2.1095 0.0766 30 1 4.0843 3.4112 -0.6998 31 1 6.8246 4.8917 0.6173 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260676455.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:58 Heat of formation + Delta-G solvation = -9.840999 kcal Electronic energy + Delta-G solvation = -15327.954607 eV Core-core repulsion = 12894.245115 eV Total energy + Delta-G solvation = -2433.709492 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.99551 -35.50976 -33.57575 -32.09463 -30.63862 -27.57562 -26.61718 -23.83308 -23.30922 -21.18546 -18.85467 -17.69606 -16.64367 -16.36384 -14.72388 -14.59567 -14.25582 -13.55469 -13.47603 -12.95303 -12.70617 -12.13797 -12.02422 -11.85962 -11.41076 -11.00080 -10.96770 -10.94314 -10.76862 -10.39899 -10.27449 -10.20146 -9.87002 -9.76305 -8.99965 -8.58278 -8.19518 -7.80506 -7.42921 -5.92524 -4.13391 1.71178 2.13992 2.64474 3.24537 3.34198 3.37418 3.55177 4.38951 5.16885 5.20879 5.51500 5.58551 5.71474 5.73100 5.84465 6.02095 6.15859 6.26940 6.35729 6.43874 6.73806 6.80749 6.85032 6.90705 7.22032 7.25932 7.41273 7.64398 7.74671 7.86334 8.16060 8.79457 9.40352 9.61222 11.00777 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.029001 B = 0.009389 C = 0.008382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.244210 B = 2981.552244 C = 3339.555323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.200 4.200 3 C -0.100 4.100 4 C -0.112 4.112 5 C -0.210 4.210 6 S 0.052 5.948 7 C -0.030 4.030 8 C -0.061 4.061 9 H 0.060 0.940 10 C -0.118 4.118 11 C 0.312 3.688 12 O -0.533 6.533 13 C -0.544 4.544 14 H 0.057 0.943 15 C 0.081 3.919 16 N -0.844 5.844 17 Si 0.879 3.121 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.284 1.284 21 H 0.066 0.934 22 H 0.061 0.939 23 H 0.071 0.929 24 H 0.129 0.871 25 H 0.055 0.945 26 H 0.075 0.925 27 H 0.057 0.943 28 H 0.017 0.983 29 H 0.080 0.920 30 H 0.354 0.646 31 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.964 -6.556 -0.977 8.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.316 4.316 3 C -0.131 4.131 4 C -0.124 4.124 5 C -0.326 4.326 6 S 0.317 5.683 7 C -0.069 4.069 8 C -0.081 4.081 9 H 0.079 0.921 10 C -0.175 4.175 11 C 0.269 3.731 12 O -0.335 6.335 13 C -0.583 4.583 14 H 0.075 0.925 15 C -0.124 4.124 16 N -0.480 5.480 17 Si 0.706 3.294 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.210 1.210 21 H 0.085 0.915 22 H 0.080 0.920 23 H 0.090 0.910 24 H 0.147 0.853 25 H 0.074 0.926 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.036 0.964 29 H 0.099 0.901 30 H 0.198 0.802 31 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.675 -8.273 -1.336 10.121 hybrid contribution -0.133 2.088 1.386 2.510 sum -5.809 -6.185 0.050 8.485 Atomic orbital electron populations 1.20201 0.88442 1.02423 1.01976 1.23909 0.99043 0.95447 1.13200 1.19636 0.92505 0.98686 1.02232 1.22072 0.95765 0.96554 0.97972 1.25610 0.99076 0.96336 1.11570 1.83452 0.97173 1.09932 1.77773 1.20863 0.86568 0.98542 1.00974 1.21703 0.96311 0.91683 0.98450 0.92111 1.21577 0.93558 1.02272 1.00075 1.18457 0.83215 0.82452 0.89013 1.86406 1.57903 1.38177 1.50999 1.21338 1.36972 1.08425 0.91526 0.92508 1.24966 0.94941 0.96415 0.96123 1.70225 1.34999 1.15151 1.27582 0.86756 0.78159 0.78958 0.85517 1.19800 1.20820 1.20984 0.91485 0.91967 0.90998 0.85322 0.92620 0.90631 0.92438 0.96371 0.90148 0.80206 0.93354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.92 10.37 36.01 0.37 -0.55 16 2 C -0.20 -3.47 6.47 -36.21 -0.23 -3.70 16 3 C -0.10 -1.98 10.03 -40.78 -0.41 -2.39 16 4 C -0.11 -2.52 5.54 -104.42 -0.58 -3.09 16 5 C -0.21 -4.37 7.35 -35.15 -0.26 -4.63 16 6 S 0.05 0.92 23.33 -107.50 -2.51 -1.59 16 7 C -0.03 -0.59 6.34 -26.55 -0.17 -0.76 16 8 C -0.06 -1.38 3.31 -89.39 -0.30 -1.68 16 9 H 0.06 1.39 8.12 -51.93 -0.42 0.97 16 10 C -0.12 -2.62 8.00 37.16 0.30 -2.32 16 11 C 0.31 7.62 0.97 -91.28 -0.09 7.53 16 12 O -0.53 -13.68 10.86 -35.23 -0.38 -14.06 16 13 C -0.54 -14.20 6.53 -34.44 -0.22 -14.43 16 14 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 15 C 0.08 2.12 4.43 -17.82 -0.08 2.04 16 16 N -0.84 -22.72 10.40 55.43 0.58 -22.15 16 17 Si 0.88 20.40 29.54 -169.99 -5.02 15.38 16 18 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 23 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.13 2.38 8.06 -52.49 -0.42 1.96 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.08 1.48 7.79 -51.93 -0.40 1.08 16 27 H 0.06 1.30 7.00 -51.93 -0.36 0.94 16 28 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 2.00 6.41 -51.93 -0.33 1.67 16 30 H 0.35 8.58 9.08 45.56 0.41 8.99 16 31 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 LS Contribution 268.08 15.07 4.04 4.04 Total: -1.00 -27.94 268.08 -8.15 -36.09 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -3.19 Total: 6.27 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: -1.67 Total: -23.99 kcal Atomic # 7 Polarization: -22.72 SS G_CDS: 0.58 Total: -22.15 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.38 Total: -14.06 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -2.51 Total: -1.59 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -27.94 -8.15 -36.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260676455.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.251 kcal (2) G-P(sol) polarization free energy of solvation -27.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds