Wall clock time and date at job start Mon Mar 30 2020 05:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32625 * 125.17380 * 2 1 4 4 C 1.40117 * 115.63451 * 180.02562 * 3 2 1 5 5 C 1.33830 * 113.70846 * 0.07575 * 4 3 2 6 6 S 1.75588 * 125.17468 * 180.02562 * 2 1 3 7 7 C 1.52117 * 110.67198 * 179.90204 * 5 4 3 8 8 C 1.54213 * 104.84538 * 342.58639 * 7 5 4 9 9 H 1.09002 * 110.97571 * 268.37412 * 8 7 5 10 10 C 1.52997 * 110.97941 * 144.59240 * 8 7 5 11 11 C 1.52793 * 136.53983 * 180.02562 * 4 3 2 12 12 O 1.42906 * 110.41300 * 316.53286 * 11 4 3 13 13 C 1.50705 * 110.32504 * 78.69763 * 11 4 3 14 14 H 1.07993 * 119.99881 * 26.63174 * 13 11 4 15 15 C 1.37879 * 119.99761 * 206.90356 * 13 11 4 16 16 N 1.31511 * 120.00203 * 359.72603 * 15 13 11 17 17 Si 1.86807 * 119.99606 * 179.72502 * 15 13 11 18 18 H 1.48497 * 109.47106 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.46883 * 120.00047 * 17 15 13 20 20 H 1.48499 * 109.46862 * 240.00235 * 17 15 13 21 21 H 1.09003 * 109.47667 * 89.99660 * 1 2 3 22 22 H 1.08999 * 109.47097 * 209.99284 * 1 2 3 23 23 H 1.08994 * 109.47330 * 329.99314 * 1 2 3 24 24 H 1.07998 * 122.18037 * 0.06151 * 3 2 1 25 25 H 1.09005 * 110.35767 * 223.74409 * 7 5 4 26 26 H 1.09003 * 110.36142 * 101.43124 * 7 5 4 27 27 H 1.09004 * 109.46970 * 310.19456 * 10 8 7 28 28 H 1.09003 * 109.47218 * 70.19151 * 10 8 7 29 29 H 1.08998 * 109.47454 * 190.18943 * 10 8 7 30 30 H 0.96694 * 113.99967 * 62.88394 * 12 11 4 31 31 H 0.97003 * 119.99640 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2710 1.0841 0.0000 4 6 3.6528 0.8519 -0.0006 5 6 3.9804 -0.4457 -0.0026 6 16 2.5185 -1.4353 -0.0006 7 6 5.4918 -0.6180 -0.0056 8 6 6.0446 0.7510 -0.4511 9 1 6.1752 0.7858 -1.5327 10 6 7.3566 1.0721 0.2675 11 6 4.9207 1.7045 -0.0003 12 8 4.7916 2.7899 -0.9209 13 6 5.2009 2.2255 1.3858 14 1 4.8485 1.6805 2.2489 15 6 5.9023 3.4009 1.5517 16 7 6.3315 4.0646 0.5005 17 14 6.2430 4.0507 3.2696 18 1 5.6577 3.1262 4.2736 19 1 7.7097 4.1470 3.4805 20 1 5.6317 5.3956 3.4204 21 1 -0.3634 0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5137 23 1 -0.3634 0.8899 0.5139 24 1 1.8552 2.0808 0.0010 25 1 5.7837 -1.3937 -0.7136 26 1 5.8475 -0.8633 0.9952 27 1 7.2301 0.9210 1.3395 28 1 8.1435 0.4144 -0.1018 29 1 7.6310 2.1095 0.0766 30 1 4.0843 3.4112 -0.6998 31 1 6.8246 4.8917 0.6173 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260676455.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:58 Heat of formation + Delta-G solvation = -26.461878 kcal Electronic energy + Delta-G solvation = -15328.675342 eV Core-core repulsion = 12894.245115 eV Total energy + Delta-G solvation = -2434.430227 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.65834 -37.12370 -35.35722 -34.07092 -32.11210 -29.16578 -28.40292 -25.61479 -24.93733 -22.65312 -20.65778 -19.32118 -18.56854 -17.86085 -16.66877 -16.33539 -15.95714 -15.17873 -14.76182 -14.52122 -14.15118 -13.73854 -13.56483 -13.50674 -13.10300 -12.80273 -12.72557 -12.51688 -12.37368 -12.12949 -12.05681 -11.80148 -11.68677 -11.51915 -10.81029 -10.57625 -10.11737 -9.22833 -8.96702 -7.92120 -6.18328 0.23010 0.70437 1.15776 1.37922 1.42979 1.51172 1.95660 2.45253 3.20654 3.78416 3.91146 4.13056 4.21101 4.46426 4.57309 4.68045 4.70386 4.77624 4.87762 4.99047 5.09607 5.12046 5.19094 5.33798 5.52482 5.62292 5.71083 5.74735 5.85082 5.99272 6.20145 6.76693 7.39991 7.64402 8.99860 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.029001 B = 0.009389 C = 0.008382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.244210 B = 2981.552244 C = 3339.555323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.184 4.184 3 C -0.137 4.137 4 C -0.140 4.140 5 C -0.235 4.235 6 S 0.109 5.891 7 C -0.024 4.024 8 C -0.067 4.067 9 H 0.051 0.949 10 C -0.108 4.108 11 C 0.297 3.703 12 O -0.548 6.548 13 C -0.548 4.548 14 H 0.039 0.961 15 C 0.047 3.953 16 N -0.867 5.867 17 Si 0.932 3.068 18 H -0.276 1.276 19 H -0.279 1.279 20 H -0.281 1.281 21 H 0.086 0.914 22 H 0.082 0.918 23 H 0.083 0.917 24 H 0.131 0.869 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.047 0.953 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.353 0.647 31 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.237 -8.135 -0.651 10.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.301 4.301 3 C -0.167 4.167 4 C -0.151 4.151 5 C -0.351 4.351 6 S 0.373 5.627 7 C -0.063 4.063 8 C -0.087 4.087 9 H 0.069 0.931 10 C -0.165 4.165 11 C 0.255 3.745 12 O -0.350 6.350 13 C -0.587 4.587 14 H 0.058 0.942 15 C -0.156 4.156 16 N -0.503 5.503 17 Si 0.758 3.242 18 H -0.201 1.201 19 H -0.205 1.205 20 H -0.207 1.207 21 H 0.105 0.895 22 H 0.100 0.900 23 H 0.102 0.898 24 H 0.149 0.851 25 H 0.100 0.900 26 H 0.096 0.904 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.197 0.803 31 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.947 -9.860 -1.006 12.103 hybrid contribution 0.184 2.520 1.260 2.823 sum -6.763 -7.340 0.254 9.984 Atomic orbital electron populations 1.20397 0.85050 1.04022 1.03724 1.24536 1.01245 0.94692 1.09614 1.19716 0.91893 0.99889 1.05183 1.21989 0.96270 0.96892 0.99999 1.25863 1.00521 0.97030 1.11695 1.83199 0.94500 1.08471 1.76496 1.20770 0.86429 0.97472 1.01657 1.21705 0.96043 0.93168 0.97811 0.93074 1.21437 0.94533 1.01027 0.99541 1.18619 0.85302 0.82604 0.88004 1.86384 1.58130 1.38909 1.51617 1.21387 1.36847 1.08509 0.91934 0.94249 1.25458 0.94806 0.96611 0.98762 1.70329 1.35599 1.15345 1.29027 0.85932 0.77949 0.78233 0.82060 1.20067 1.20488 1.20722 0.89507 0.89965 0.89811 0.85117 0.89991 0.90435 0.93388 0.93317 0.93214 0.80320 0.93500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.62 10.37 71.24 0.74 -0.88 16 2 C -0.18 -5.93 6.47 24.52 0.16 -5.77 16 3 C -0.14 -5.35 10.03 21.56 0.22 -5.13 16 4 C -0.14 -6.27 5.54 -19.73 -0.11 -6.38 16 5 C -0.24 -9.52 7.35 25.14 0.18 -9.33 16 6 S 0.11 3.50 23.33 -56.49 -1.32 2.18 16 7 C -0.02 -0.92 6.34 30.71 0.19 -0.73 16 8 C -0.07 -3.04 3.31 -10.00 -0.03 -3.08 16 9 H 0.05 2.38 8.12 -2.39 -0.02 2.36 16 10 C -0.11 -4.83 8.00 71.98 0.58 -4.26 16 11 C 0.30 14.82 0.97 -11.22 -0.01 14.81 16 12 O -0.55 -29.09 10.86 -148.98 -1.62 -30.71 16 13 C -0.55 -29.21 6.53 25.60 0.17 -29.05 16 14 H 0.04 2.19 7.81 -2.91 -0.02 2.16 16 15 C 0.05 2.50 4.43 84.66 0.38 2.88 16 16 N -0.87 -47.73 10.40 21.45 0.22 -47.50 16 17 Si 0.93 42.42 29.54 68.60 2.03 44.44 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 21 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 22 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.13 4.87 8.06 -2.91 -0.02 4.84 16 25 H 0.08 2.71 8.14 -2.38 -0.02 2.70 16 26 H 0.08 2.96 7.79 -2.39 -0.02 2.94 16 27 H 0.05 2.18 7.00 -2.39 -0.02 2.16 16 28 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.05 2.52 6.41 -2.39 -0.02 2.50 16 30 H 0.35 17.91 9.08 -74.06 -0.67 17.23 16 31 H 0.26 13.53 8.31 -92.71 -0.77 12.76 16 Total: -1.00 -60.03 268.08 2.24 -57.79 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.46 Total: 20.71 kcal Atomic # 6 Polarization: -49.37 SS G_CDS: 2.46 Total: -46.91 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: 0.22 Total: -47.50 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -1.62 Total: -30.71 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Atomic # 16 Polarization: 3.50 SS G_CDS: -1.32 Total: 2.18 kcal Total: -60.03 2.24 -57.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260676455.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.328 kcal (2) G-P(sol) polarization free energy of solvation -60.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds