Wall clock time and date at job start Mon Mar 30 2020 05:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38284 * 119.98068 * 264.71832 * 10 9 7 12 12 C 1.38211 * 120.14026 * 179.72801 * 11 10 9 13 13 C 1.50697 * 119.92886 * 180.29309 * 12 11 10 14 14 F 1.39902 * 109.46917 * 270.27060 * 13 12 11 15 15 C 1.38286 * 120.14276 * 0.56022 * 12 11 10 16 16 C 1.38502 * 120.02733 * 359.72928 * 15 12 11 17 17 C 1.38494 * 119.98758 * 85.00095 * 10 9 7 18 18 O 1.36504 * 131.54345 * 0.02562 * 17 10 9 19 19 C 1.43980 * 105.48949 * 162.68438 * 18 17 10 20 20 O 1.36497 * 131.53910 * 179.97438 * 16 15 12 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.07998 * 119.93152 * 0.02743 * 11 10 9 25 25 H 1.09001 * 109.47316 * 30.26864 * 13 12 11 26 26 H 1.09000 * 109.47610 * 150.27724 * 13 12 11 27 27 H 1.07996 * 119.98192 * 179.69958 * 15 12 11 28 28 H 1.09005 * 110.56958 * 268.56300 * 19 18 17 29 29 H 1.09003 * 110.70080 * 145.75446 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.5956 -4.2362 -1.2057 12 6 3.4977 -5.2832 -1.2146 13 6 3.8975 -5.9201 -2.5206 14 9 3.0225 -6.9715 -2.8139 15 6 4.0300 -5.7514 -0.0273 16 6 3.6640 -5.1676 1.1742 17 6 2.7594 -4.1082 1.1826 18 8 2.5636 -3.7122 2.4742 19 6 3.0404 -4.8011 3.2866 20 8 4.0348 -5.4347 2.4604 21 1 -0.4850 0.8401 -0.0004 22 1 0.6242 -2.5609 0.8844 23 1 0.6244 -2.5529 -0.8956 24 1 2.1788 -3.8761 -2.1347 25 1 3.8518 -5.1766 -3.3164 26 1 4.9141 -6.3051 -2.4410 27 1 4.7310 -6.5728 -0.0369 28 1 2.2302 -5.4951 3.5108 29 1 3.4888 -4.4274 4.2072 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260706441.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:54 Heat of formation + Delta-G solvation = -97.414532 kcal Electronic energy + Delta-G solvation = -16490.644594 eV Core-core repulsion = 13486.924453 eV Total energy + Delta-G solvation = -3003.720141 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -47.47807 -41.70737 -37.78599 -35.88490 -33.51809 -31.58691 -30.33962 -27.32632 -26.39308 -24.92850 -23.49850 -22.00941 -20.37684 -17.57407 -17.19892 -17.00561 -16.28165 -15.92720 -15.68815 -15.28971 -14.65238 -14.53943 -13.92408 -13.67850 -12.91906 -12.70235 -12.51852 -12.48261 -11.98704 -11.51088 -11.13179 -11.07142 -10.98783 -10.58907 -10.52496 -10.47833 -9.64450 -9.51114 -8.43888 -8.01757 -7.62849 -6.05947 -4.09694 1.51020 1.73077 3.15458 3.31570 3.35380 3.38813 3.86876 4.00396 4.44089 4.75348 4.87655 4.95062 4.98856 5.03746 5.19166 5.29349 5.54157 5.61055 5.79322 5.82396 6.02822 6.45578 6.47750 6.68098 6.79193 6.98569 7.45653 7.61752 7.65782 7.88459 8.26130 8.93326 9.53619 11.04192 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.021154 B = 0.008126 C = 0.006468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.316344 B = 3444.876274 C = 4328.037919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.511 4.511 8 H 0.056 0.944 9 C 0.052 3.948 10 C -0.020 4.020 11 C -0.089 4.089 12 C -0.137 4.137 13 C 0.116 3.884 14 F -0.215 7.215 15 C -0.105 4.105 16 C 0.020 3.980 17 C 0.045 3.955 18 O -0.291 6.291 19 C 0.209 3.791 20 O -0.317 6.317 21 H 0.263 0.737 22 H 0.034 0.966 23 H 0.034 0.966 24 H 0.137 0.863 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.127 0.873 28 H 0.076 0.924 29 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.819 -10.837 0.037 12.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.550 4.550 8 H 0.074 0.926 9 C 0.015 3.985 10 C -0.021 4.021 11 C -0.107 4.107 12 C -0.137 4.137 13 C 0.061 3.939 14 F -0.196 7.196 15 C -0.124 4.124 16 C -0.024 4.024 17 C 0.000 4.000 18 O -0.207 6.207 19 C 0.097 3.903 20 O -0.233 6.233 21 H 0.073 0.927 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.154 0.846 25 H 0.104 0.896 26 H 0.098 0.902 27 H 0.145 0.855 28 H 0.094 0.906 29 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.729 -10.659 0.230 12.607 hybrid contribution 0.408 0.896 0.414 1.068 sum 7.136 -9.762 0.644 12.110 Atomic orbital electron populations 1.69944 1.06026 1.26994 1.50262 1.24979 0.94886 0.99218 0.95049 0.86576 0.79537 0.82708 0.78749 1.20110 1.21175 1.20165 1.20950 0.92913 0.89709 1.51378 0.92594 1.18316 0.92274 0.89016 0.98860 1.19819 0.97271 0.97102 0.87901 1.20791 0.97039 0.95156 0.97737 1.19789 1.00897 0.99050 0.94014 1.20682 0.91805 0.86870 0.94494 1.92794 1.72390 1.59937 1.94492 1.19559 1.03633 1.01152 0.88018 1.19704 0.98686 0.98167 0.85863 1.19699 0.98907 0.95232 0.86129 1.87498 1.80645 1.38706 1.13835 1.25549 0.88140 0.84147 0.92466 1.87267 1.48382 1.73737 1.13952 0.92728 0.94818 0.94756 0.84567 0.89571 0.90177 0.85539 0.90598 0.85755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.41 13.29 55.43 0.74 -25.67 15 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 15 3 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 15 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 15 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 7 C -0.51 -14.44 9.09 -34.44 -0.31 -14.75 15 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 15 9 C 0.05 1.35 5.10 -29.03 -0.15 1.20 15 10 C -0.02 -0.45 5.08 -104.51 -0.53 -0.98 15 11 C -0.09 -1.66 9.32 -39.57 -0.37 -2.03 15 12 C -0.14 -2.18 5.60 -104.62 -0.59 -2.76 15 13 C 0.12 1.42 7.67 36.00 0.28 1.69 15 14 F -0.22 -3.08 17.34 2.25 0.04 -3.04 15 15 C -0.10 -1.69 9.71 -39.47 -0.38 -2.08 15 16 C 0.02 0.37 7.15 -39.08 -0.28 0.09 15 17 C 0.04 0.95 6.83 -39.09 -0.27 0.68 15 18 O -0.29 -6.03 11.39 -45.70 -0.52 -6.55 15 19 C 0.21 3.14 8.89 101.05 0.90 4.04 15 20 O -0.32 -5.39 11.40 -45.68 -0.52 -5.91 15 21 H 0.26 7.34 8.31 -40.82 -0.34 7.01 15 22 H 0.03 0.94 8.12 -51.93 -0.42 0.52 15 23 H 0.03 0.90 8.05 -51.93 -0.42 0.49 15 24 H 0.14 2.34 8.06 -52.49 -0.42 1.92 15 25 H 0.09 0.90 8.09 -51.93 -0.42 0.48 15 26 H 0.08 0.76 8.08 -51.93 -0.42 0.34 15 27 H 0.13 1.68 8.06 -52.49 -0.42 1.26 15 28 H 0.08 0.96 8.14 -51.93 -0.42 0.54 15 29 H 0.13 1.43 8.14 -51.93 -0.42 1.00 15 LS Contribution 264.98 15.07 3.99 3.99 Total: -1.00 -31.83 264.98 -6.00 -37.83 By element: Atomic # 1 Polarization: -1.07 SS G_CDS: -2.91 Total: -3.98 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: -1.80 Total: -13.27 kcal Atomic # 7 Polarization: -26.41 SS G_CDS: 0.74 Total: -25.67 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: -1.04 Total: -12.47 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.04 Total: -3.04 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -31.83 -6.00 -37.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260706441.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.585 kcal (2) G-P(sol) polarization free energy of solvation -31.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds