Wall clock time and date at job start Mon Mar 30 2020 05:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86794 * 120.00425 * 2 1 4 4 H 1.48503 * 109.47340 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47416 * 300.00457 * 3 2 1 6 6 H 1.48502 * 109.47086 * 59.99944 * 3 2 1 7 7 C 1.37878 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00101 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00404 * 359.97438 * 7 2 1 10 10 C 1.50691 * 109.47643 * 180.02562 * 9 7 2 11 11 C 1.38290 * 119.93240 * 265.02574 * 10 9 7 12 12 C 1.38497 * 120.03175 * 179.97438 * 11 10 9 13 13 C 1.39306 * 119.82657 * 0.02581 * 12 11 10 14 14 C 1.38502 * 119.82841 * 359.70200 * 13 12 11 15 15 C 1.38211 * 119.93112 * 85.00172 * 10 9 7 16 16 C 1.50703 * 119.92421 * 0.02562 * 15 10 9 17 17 F 1.39901 * 109.47086 * 270.00237 * 16 15 10 18 18 O 1.36506 * 108.63337 * 179.97438 * 13 12 11 19 19 C 1.43996 * 105.48281 * 342.71698 * 18 13 12 20 20 O 1.36503 * 131.53888 * 180.02562 * 12 11 10 21 21 H 0.97003 * 119.99906 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.46829 * 60.00281 * 9 7 2 23 23 H 1.09001 * 109.47079 * 300.01048 * 9 7 2 24 24 H 1.08000 * 119.98135 * 359.97438 * 11 10 9 25 25 H 1.08003 * 119.98494 * 180.31037 * 14 13 12 26 26 H 1.09002 * 109.47152 * 149.99905 * 16 15 10 27 27 H 1.09001 * 109.46980 * 30.00005 * 16 15 10 28 28 H 1.09002 * 110.56892 * 268.56338 * 19 18 13 29 29 H 1.08996 * 110.56753 * 145.69575 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2301 -3.6446 -0.0005 11 6 2.5995 -4.2367 -1.1945 12 6 3.4997 -5.2892 -1.1969 13 6 4.0309 -5.7494 0.0059 14 6 3.6607 -5.1480 1.1974 15 6 2.7576 -4.1010 1.1927 16 6 2.3517 -3.4523 2.4910 17 9 3.2245 -2.3974 2.7781 18 8 4.8831 -6.7820 -0.2604 19 6 4.5566 -7.2156 -1.5942 20 8 4.0197 -6.0332 -2.2164 21 1 -0.4850 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8904 23 1 0.6245 -2.5571 0.8896 24 1 2.1858 -3.8780 -2.1254 25 1 4.0748 -5.4995 2.1309 26 1 2.3947 -4.1883 3.2939 27 1 1.3350 -3.0692 2.4034 28 1 3.8084 -8.0079 -1.5669 29 1 5.4519 -7.5508 -2.1177 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260708836.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:27 Heat of formation + Delta-G solvation = -94.320132 kcal Electronic energy + Delta-G solvation = -16643.244049 eV Core-core repulsion = 13639.658091 eV Total energy + Delta-G solvation = -3003.585958 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -46.83223 -41.83142 -37.97081 -36.00985 -33.30374 -31.15003 -30.99661 -27.28492 -26.41068 -24.81313 -23.32068 -21.87319 -20.87622 -17.40731 -17.23797 -17.01376 -16.31455 -15.90549 -15.12463 -15.05445 -14.55657 -14.34554 -13.92373 -13.57569 -13.37593 -12.73200 -12.67235 -12.31919 -12.13384 -11.41349 -11.28313 -10.80851 -10.67194 -10.42654 -10.29875 -10.17885 -9.66327 -9.38165 -8.44037 -8.33732 -7.54507 -6.07108 -4.10063 1.52230 1.70768 3.02473 3.31623 3.39268 3.46176 3.66864 3.99486 4.46687 4.76725 4.86435 4.94674 5.15031 5.25415 5.28449 5.46173 5.63664 5.67817 5.86275 6.02766 6.28049 6.43673 6.45807 6.63469 6.88287 6.91988 7.38972 7.51914 7.61327 7.89629 8.23308 8.94554 9.54605 11.02783 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.031125 B = 0.007358 C = 0.006624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.395117 B = 3804.411643 C = 4225.938312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.506 4.506 8 H 0.060 0.940 9 C 0.047 3.953 10 C 0.001 3.999 11 C -0.106 4.106 12 C 0.039 3.961 13 C -0.007 4.007 14 C -0.077 4.077 15 C -0.135 4.135 16 C 0.119 3.881 17 F -0.204 7.204 18 O -0.315 6.315 19 C 0.214 3.786 20 O -0.313 6.313 21 H 0.262 0.738 22 H 0.034 0.966 23 H 0.038 0.962 24 H 0.135 0.865 25 H 0.128 0.872 26 H 0.067 0.933 27 H 0.095 0.905 28 H 0.077 0.923 29 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.779 -12.155 0.764 13.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.140 4.140 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.544 4.544 8 H 0.078 0.922 9 C 0.010 3.990 10 C 0.000 4.000 11 C -0.125 4.125 12 C -0.005 4.005 13 C -0.050 4.050 14 C -0.095 4.095 15 C -0.136 4.136 16 C 0.064 3.936 17 F -0.185 7.185 18 O -0.232 6.232 19 C 0.102 3.898 20 O -0.229 6.229 21 H 0.071 0.929 22 H 0.052 0.948 23 H 0.056 0.944 24 H 0.153 0.847 25 H 0.146 0.854 26 H 0.086 0.914 27 H 0.113 0.887 28 H 0.095 0.905 29 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.839 -12.082 0.664 13.032 hybrid contribution 0.664 0.685 -0.240 0.984 sum 5.503 -11.397 0.423 12.663 Atomic orbital electron populations 1.69951 1.06002 1.26833 1.50621 1.24950 0.94852 0.99254 0.94982 0.86462 0.80340 0.83342 0.77531 1.19557 1.21053 1.20881 1.21006 0.93201 0.89289 1.50895 0.92178 1.18474 0.92337 0.89187 0.98971 1.20406 0.95588 0.94051 0.89929 1.20082 0.97312 0.95254 0.99852 1.19874 0.98319 0.97436 0.84906 1.19508 0.96203 0.94270 0.95008 1.19791 0.98086 0.96878 0.94775 1.19836 1.00013 0.97306 0.96417 1.20613 0.94003 0.86237 0.92697 1.92807 1.71899 1.59575 1.94250 1.87286 1.54909 1.48324 1.32692 1.25482 0.98756 0.87883 0.77704 1.87329 1.73121 1.32081 1.30409 0.92855 0.94779 0.94430 0.84716 0.85389 0.91438 0.88712 0.90520 0.85851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.63 13.29 55.43 0.74 -24.90 15 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 15 3 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 15 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 15 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 7 C -0.51 -13.77 9.09 -34.44 -0.31 -14.08 15 8 H 0.06 1.68 7.74 -52.49 -0.41 1.28 15 9 C 0.05 1.13 4.60 -29.04 -0.13 1.00 15 10 C 0.00 0.01 5.07 -104.62 -0.53 -0.52 15 11 C -0.11 -2.09 9.69 -39.47 -0.38 -2.48 15 12 C 0.04 0.71 7.15 -39.09 -0.28 0.43 15 13 C -0.01 -0.12 7.15 -39.09 -0.28 -0.39 15 14 C -0.08 -1.31 9.71 -39.47 -0.38 -1.70 15 15 C -0.14 -2.55 5.60 -104.62 -0.59 -3.14 15 16 C 0.12 2.10 7.26 36.01 0.26 2.36 15 17 F -0.20 -4.27 17.34 2.25 0.04 -4.23 15 18 O -0.32 -4.97 11.40 -45.71 -0.52 -5.49 15 19 C 0.21 2.65 8.89 101.05 0.90 3.55 15 20 O -0.31 -5.15 11.40 -45.70 -0.52 -5.67 15 21 H 0.26 7.11 8.31 -40.82 -0.34 6.77 15 22 H 0.03 0.86 8.05 -51.93 -0.42 0.44 15 23 H 0.04 0.93 6.15 -51.93 -0.32 0.61 15 24 H 0.13 2.55 8.06 -52.49 -0.42 2.12 15 25 H 0.13 1.85 8.06 -52.48 -0.42 1.42 15 26 H 0.07 0.91 8.09 -51.93 -0.42 0.49 15 27 H 0.09 1.73 6.01 -51.93 -0.31 1.42 15 28 H 0.08 0.77 8.14 -51.93 -0.42 0.35 15 29 H 0.12 1.09 8.14 -51.93 -0.42 0.66 15 LS Contribution 260.70 15.07 3.93 3.93 Total: -1.00 -30.55 260.70 -5.89 -36.44 By element: Atomic # 1 Polarization: -0.62 SS G_CDS: -2.70 Total: -3.33 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: -1.82 Total: -13.36 kcal Atomic # 7 Polarization: -25.63 SS G_CDS: 0.74 Total: -24.90 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: -1.04 Total: -11.16 kcal Atomic # 9 Polarization: -4.27 SS G_CDS: 0.04 Total: -4.23 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.55 -5.89 -36.44 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260708836.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.882 kcal (2) G-P(sol) polarization free energy of solvation -30.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds