Wall clock time and date at job start Mon Mar 30 2020 05:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86794 * 120.00425 * 2 1 4 4 H 1.48503 * 109.47340 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47416 * 300.00457 * 3 2 1 6 6 H 1.48502 * 109.47086 * 59.99944 * 3 2 1 7 7 C 1.37878 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00101 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00404 * 359.97438 * 7 2 1 10 10 C 1.50691 * 109.47643 * 180.02562 * 9 7 2 11 11 C 1.38290 * 119.93240 * 265.02574 * 10 9 7 12 12 C 1.38497 * 120.03175 * 179.97438 * 11 10 9 13 13 C 1.39306 * 119.82657 * 0.02581 * 12 11 10 14 14 C 1.38502 * 119.82841 * 359.70200 * 13 12 11 15 15 C 1.38211 * 119.93112 * 85.00172 * 10 9 7 16 16 C 1.50703 * 119.92421 * 0.02562 * 15 10 9 17 17 F 1.39901 * 109.47086 * 270.00237 * 16 15 10 18 18 O 1.36506 * 108.63337 * 179.97438 * 13 12 11 19 19 C 1.43996 * 105.48281 * 342.71698 * 18 13 12 20 20 O 1.36503 * 131.53888 * 180.02562 * 12 11 10 21 21 H 0.97003 * 119.99906 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.46829 * 60.00281 * 9 7 2 23 23 H 1.09001 * 109.47079 * 300.01048 * 9 7 2 24 24 H 1.08000 * 119.98135 * 359.97438 * 11 10 9 25 25 H 1.08003 * 119.98494 * 180.31037 * 14 13 12 26 26 H 1.09002 * 109.47152 * 149.99905 * 16 15 10 27 27 H 1.09001 * 109.46980 * 30.00005 * 16 15 10 28 28 H 1.09002 * 110.56892 * 268.56338 * 19 18 13 29 29 H 1.08996 * 110.56753 * 145.69575 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2301 -3.6446 -0.0005 11 6 2.5995 -4.2367 -1.1945 12 6 3.4997 -5.2892 -1.1969 13 6 4.0309 -5.7494 0.0059 14 6 3.6607 -5.1480 1.1974 15 6 2.7576 -4.1010 1.1927 16 6 2.3517 -3.4523 2.4910 17 9 3.2245 -2.3974 2.7781 18 8 4.8831 -6.7820 -0.2604 19 6 4.5566 -7.2156 -1.5942 20 8 4.0197 -6.0332 -2.2164 21 1 -0.4850 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8904 23 1 0.6245 -2.5571 0.8896 24 1 2.1858 -3.8780 -2.1254 25 1 4.0748 -5.4995 2.1309 26 1 2.3947 -4.1883 3.2939 27 1 1.3350 -3.0692 2.4034 28 1 3.8084 -8.0079 -1.5669 29 1 5.4519 -7.5508 -2.1177 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260708836.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:26 Heat of formation + Delta-G solvation = -112.682297 kcal Electronic energy + Delta-G solvation = -16644.040292 eV Core-core repulsion = 13639.658091 eV Total energy + Delta-G solvation = -3004.382201 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.36724 -43.09739 -39.42565 -37.25856 -35.27877 -32.73617 -32.54233 -29.02225 -27.61403 -26.26325 -25.03894 -23.35132 -22.36128 -18.69549 -18.63719 -18.46310 -18.23180 -17.22096 -16.65388 -16.43795 -16.38284 -15.74800 -15.34745 -14.95549 -14.79130 -14.47740 -14.02625 -13.95788 -13.62695 -13.28463 -12.91879 -12.64726 -12.46149 -11.90900 -11.82841 -11.77438 -11.44905 -11.25673 -10.55985 -9.79571 -8.97248 -8.18032 -6.28101 0.08404 0.26117 1.39642 1.41771 1.54193 1.78724 2.39105 2.53516 2.57647 3.14247 3.49425 3.71100 3.83548 3.96924 4.07758 4.17772 4.27814 4.31867 4.41863 4.64891 4.87109 5.01358 5.03903 5.10675 5.27973 5.34344 5.46975 5.76397 5.85037 6.11831 6.20245 6.81491 7.39515 8.90884 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.031125 B = 0.007358 C = 0.006624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.395117 B = 3804.411643 C = 4225.938312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.013 3.987 3 Si 0.954 3.046 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.515 4.515 8 H 0.046 0.954 9 C 0.056 3.944 10 C -0.025 4.025 11 C -0.120 4.120 12 C 0.035 3.965 13 C 0.000 4.000 14 C -0.070 4.070 15 C -0.138 4.138 16 C 0.114 3.886 17 F -0.224 7.224 18 O -0.319 6.319 19 C 0.204 3.796 20 O -0.326 6.326 21 H 0.265 0.735 22 H 0.011 0.989 23 H 0.028 0.972 24 H 0.129 0.871 25 H 0.163 0.837 26 H 0.118 0.882 27 H 0.080 0.920 28 H 0.106 0.894 29 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.322 -13.566 1.249 15.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.185 4.185 3 Si 0.779 3.221 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.553 4.553 8 H 0.065 0.935 9 C 0.020 3.980 10 C -0.026 4.026 11 C -0.139 4.139 12 C -0.009 4.009 13 C -0.044 4.044 14 C -0.089 4.089 15 C -0.139 4.139 16 C 0.060 3.940 17 F -0.206 7.206 18 O -0.236 6.236 19 C 0.093 3.907 20 O -0.242 6.242 21 H 0.074 0.926 22 H 0.030 0.970 23 H 0.046 0.954 24 H 0.147 0.853 25 H 0.180 0.820 26 H 0.136 0.864 27 H 0.098 0.902 28 H 0.123 0.877 29 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 6.388 -13.512 1.140 14.989 hybrid contribution 0.235 0.963 -0.452 1.090 sum 6.622 -12.549 0.688 14.206 Atomic orbital electron populations 1.70038 1.07189 1.27745 1.51537 1.25695 0.95646 1.02391 0.94785 0.85558 0.78922 0.79682 0.77904 1.19659 1.20237 1.20152 1.21209 0.92686 0.90947 1.50462 0.93524 1.18195 0.92612 0.89878 0.97329 1.20114 0.96535 0.94275 0.91640 1.19993 0.98356 0.96270 0.99300 1.19838 0.97911 0.97152 0.86046 1.19681 0.95653 0.94331 0.94774 1.20040 0.96973 0.95702 0.96142 1.19957 1.00190 0.97790 0.95963 1.20846 0.92702 0.86564 0.93938 1.92760 1.72491 1.60912 1.94390 1.87283 1.54393 1.47542 1.34333 1.26157 1.01424 0.86760 0.76325 1.87313 1.73006 1.33313 1.30608 0.92584 0.97041 0.95352 0.85310 0.81983 0.86363 0.90181 0.87651 0.81868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.06 13.29 21.45 0.28 -53.77 15 2 C 0.01 0.75 5.46 84.66 0.46 1.22 15 3 Si 0.95 44.78 29.54 68.60 2.03 46.80 15 4 H -0.27 -12.69 7.11 99.48 0.71 -11.99 15 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 15 6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 15 7 C -0.52 -28.81 9.09 25.60 0.23 -28.57 15 8 H 0.05 2.68 7.74 -2.91 -0.02 2.66 15 9 C 0.06 2.86 4.60 29.10 0.13 2.99 15 10 C -0.03 -1.08 5.07 -19.86 -0.10 -1.18 15 11 C -0.12 -4.82 9.69 22.34 0.22 -4.61 15 12 C 0.03 1.25 7.15 22.59 0.16 1.41 15 13 C 0.00 -0.01 7.15 22.59 0.16 0.15 15 14 C -0.07 -2.22 9.71 22.34 0.22 -2.00 15 15 C -0.14 -5.10 5.60 -19.86 -0.11 -5.21 15 16 C 0.11 3.89 7.26 71.24 0.52 4.41 15 17 F -0.22 -9.25 17.34 44.97 0.78 -8.47 15 18 O -0.32 -8.92 11.40 -76.12 -0.87 -9.78 15 19 C 0.20 4.30 8.89 113.37 1.01 5.31 15 20 O -0.33 -10.06 11.40 -76.08 -0.87 -10.93 15 21 H 0.27 14.59 8.31 -92.71 -0.77 13.82 15 22 H 0.01 0.61 8.05 -2.38 -0.02 0.59 15 23 H 0.03 1.46 6.15 -2.39 -0.01 1.45 15 24 H 0.13 5.11 8.06 -2.91 -0.02 5.09 15 25 H 0.16 3.98 8.06 -2.91 -0.02 3.95 15 26 H 0.12 2.82 8.09 -2.39 -0.02 2.80 15 27 H 0.08 2.95 6.01 -2.39 -0.01 2.94 15 28 H 0.11 1.67 8.14 -2.39 -0.02 1.65 15 29 H 0.16 2.12 8.14 -2.39 -0.02 2.10 15 Total: -1.00 -66.36 260.70 5.43 -60.93 By element: Atomic # 1 Polarization: 0.15 SS G_CDS: 1.17 Total: 1.32 kcal Atomic # 6 Polarization: -29.00 SS G_CDS: 2.90 Total: -26.10 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: 0.28 Total: -53.77 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -1.74 Total: -20.71 kcal Atomic # 9 Polarization: -9.25 SS G_CDS: 0.78 Total: -8.47 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -66.36 5.43 -60.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260708836.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.753 kcal (2) G-P(sol) polarization free energy of solvation -66.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds