Wall clock time and date at job start Mon Mar 30 2020 05:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86811 * 120.00080 * 2 1 4 4 H 1.48499 * 109.47120 * 267.56093 * 3 2 1 5 5 H 1.48501 * 109.46646 * 27.55685 * 3 2 1 6 6 H 1.48492 * 109.47175 * 147.55797 * 3 2 1 7 7 C 1.38753 * 120.00199 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00171 * 340.59213 * 7 2 1 9 9 N 1.36812 * 119.99961 * 160.58923 * 7 2 1 10 10 C 1.47247 * 121.15191 * 334.53864 * 9 7 2 11 11 C 1.53498 * 107.25661 * 221.19619 * 10 9 7 12 12 N 1.46569 * 109.07777 * 298.37041 * 11 10 9 13 13 C 1.39550 * 113.07799 * 53.13767 * 12 11 10 14 14 C 1.39227 * 118.87771 * 156.96991 * 13 12 11 15 15 Cl 1.73594 * 119.89803 * 359.96121 * 14 13 12 16 16 C 1.38176 * 120.20378 * 179.68543 * 14 13 12 17 17 C 1.38372 * 120.33675 * 0.30982 * 16 14 13 18 18 C 1.38123 * 120.02276 * 0.11203 * 17 16 14 19 19 C 1.38946 * 120.00821 * 359.94196 * 18 17 16 20 20 H 0.97003 * 119.99672 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.90424 * 340.63531 * 10 9 7 22 22 H 1.09004 * 109.90268 * 101.76130 * 10 9 7 23 23 H 1.09005 * 109.53508 * 58.24427 * 11 10 9 24 24 H 1.08998 * 109.54087 * 178.40723 * 11 10 9 25 25 H 1.00901 * 110.99930 * 287.93627 * 12 11 10 26 26 H 1.08006 * 119.82990 * 180.28174 * 16 14 13 27 27 H 1.07999 * 119.98768 * 180.14065 * 17 16 14 28 28 H 1.07998 * 119.99413 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.5494 2.0167 -1.3988 5 1 1.4228 2.6671 0.6477 6 1 3.5210 1.4557 0.7510 7 6 2.0100 -1.2016 -0.0005 8 1 1.5161 -2.1105 0.3098 9 7 3.3198 -1.2351 -0.3943 10 6 3.8651 -0.2218 -1.3131 11 6 4.7801 -0.9525 -2.3056 12 7 5.8793 -1.5830 -1.5690 13 6 5.4411 -2.3976 -0.5241 14 6 6.2798 -3.4086 -0.0626 15 17 7.8401 -3.6371 -0.7883 16 6 5.8763 -4.2270 0.9750 17 6 4.6342 -4.0534 1.5596 18 6 3.7893 -3.0596 1.1052 19 6 4.1869 -2.2330 0.0615 20 1 -0.4850 0.8401 0.0004 21 1 3.0526 0.2685 -1.8493 22 1 4.4396 0.5161 -0.7531 23 1 4.2092 -1.7167 -2.8331 24 1 5.1833 -0.2383 -3.0235 25 1 6.5333 -0.8917 -1.2338 26 1 6.5335 -5.0065 1.3312 27 1 4.3254 -4.6948 2.3717 28 1 2.8198 -2.9248 1.5615 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260710220.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:14 Heat of formation + Delta-G solvation = 41.492047 kcal Electronic energy + Delta-G solvation = -14913.596566 eV Core-core repulsion = 12376.528992 eV Total energy + Delta-G solvation = -2537.067574 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.057 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.73258 -36.54819 -35.54743 -34.69522 -32.12420 -30.02205 -28.99297 -26.67776 -24.04697 -23.26978 -21.23827 -19.85285 -17.46822 -16.75993 -16.31366 -15.62953 -14.86572 -14.17371 -13.96388 -13.80690 -13.28916 -12.91993 -12.73971 -12.41147 -12.33890 -11.53993 -11.13154 -10.90828 -10.87188 -10.70665 -10.57105 -10.22835 -9.98423 -9.66448 -8.93033 -8.63787 -7.50171 -6.83197 -6.59712 -3.93992 2.00232 2.21950 2.83334 2.92521 3.10197 3.11484 3.95296 4.20453 4.39083 4.52302 4.89082 5.38123 5.51200 5.62752 5.69774 5.89944 5.98963 6.06578 6.23400 6.33872 6.51398 6.75873 6.96366 7.20645 7.40385 7.44512 7.60996 7.74073 7.98895 8.34397 9.01553 9.27169 10.50248 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.036025 B = 0.009055 C = 0.007716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.044951 B = 3091.571283 C = 3628.054713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.050 3.950 3 Si 0.888 3.112 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.304 4.304 8 H 0.111 0.889 9 N -0.465 5.465 10 C 0.050 3.950 11 C 0.050 3.950 12 N -0.621 5.621 13 C -0.007 4.007 14 C 0.020 3.980 15 Cl -0.090 7.090 16 C -0.208 4.208 17 C -0.074 4.074 18 C -0.181 4.181 19 C 0.187 3.813 20 H 0.277 0.723 21 H 0.093 0.907 22 H 0.054 0.946 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.340 0.660 26 H 0.114 0.886 27 H 0.116 0.884 28 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.644 -1.814 -0.947 9.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.156 4.156 3 Si 0.716 3.284 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.192 1.192 7 C -0.431 4.431 8 H 0.128 0.872 9 N -0.156 5.156 10 C -0.075 4.075 11 C -0.080 4.080 12 N -0.248 5.248 13 C -0.110 4.110 14 C -0.009 4.009 15 Cl -0.061 7.061 16 C -0.230 4.230 17 C -0.094 4.094 18 C -0.206 4.206 19 C 0.071 3.929 20 H 0.087 0.913 21 H 0.111 0.889 22 H 0.071 0.929 23 H 0.102 0.898 24 H 0.102 0.898 25 H 0.164 0.836 26 H 0.132 0.868 27 H 0.134 0.866 28 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 9.407 -1.952 -1.583 9.737 hybrid contribution 0.062 1.603 0.548 1.696 sum 9.469 -0.349 -1.034 9.532 Atomic orbital electron populations 1.69799 1.05913 1.28265 1.45874 1.25281 0.95373 0.98416 0.96561 0.86937 0.79970 0.83187 0.78325 1.20178 1.21533 1.19235 1.19103 0.82802 0.96704 1.44516 0.87192 1.42855 1.07918 1.24112 1.40717 1.22858 0.99060 0.92479 0.93128 1.22356 0.91664 0.98379 0.95597 1.57073 1.16935 1.24825 1.25966 1.17567 0.94989 1.00809 0.97649 1.20301 0.86432 0.96882 0.97254 1.98286 1.27956 1.96442 1.83430 1.20266 0.98520 1.03504 1.00753 1.20635 0.93033 0.97062 0.98653 1.20642 1.01811 0.98966 0.99142 1.17977 0.89520 0.92792 0.92615 0.91293 0.88923 0.92852 0.89782 0.89765 0.83560 0.86777 0.86622 0.85451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.69 13.97 55.49 0.78 -22.91 15 2 C 0.05 1.29 5.27 -17.45 -0.09 1.20 15 3 Si 0.89 19.94 24.13 -169.99 -4.10 15.84 15 4 H -0.28 -5.78 6.47 56.52 0.37 -5.41 15 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 15 6 H -0.27 -6.07 6.61 56.52 0.37 -5.70 15 7 C -0.30 -7.90 9.24 -15.14 -0.14 -8.04 15 8 H 0.11 3.04 6.99 -52.49 -0.37 2.68 15 9 N -0.47 -10.80 2.82 -112.09 -0.32 -11.11 15 10 C 0.05 1.02 4.32 -3.38 -0.01 1.00 15 11 C 0.05 0.86 6.75 -3.75 -0.03 0.83 15 12 N -0.62 -10.92 5.87 -58.14 -0.34 -11.26 15 13 C -0.01 -0.13 6.16 -83.55 -0.51 -0.65 15 14 C 0.02 0.38 6.34 -39.24 -0.25 0.13 15 15 Cl -0.09 -1.45 28.35 -51.86 -1.47 -2.92 15 16 C -0.21 -3.61 9.80 -39.55 -0.39 -4.00 15 17 C -0.07 -1.31 10.05 -39.57 -0.40 -1.71 15 18 C -0.18 -3.76 9.23 -39.36 -0.36 -4.12 15 19 C 0.19 4.09 6.34 -83.51 -0.53 3.56 15 20 H 0.28 7.08 8.31 -40.82 -0.34 6.75 15 21 H 0.09 1.92 5.30 -51.93 -0.28 1.65 15 22 H 0.05 1.06 6.25 -51.93 -0.32 0.74 15 23 H 0.08 1.54 8.14 -51.93 -0.42 1.12 15 24 H 0.08 1.16 8.14 -51.93 -0.42 0.74 15 25 H 0.34 5.45 8.83 -39.29 -0.35 5.10 15 26 H 0.11 1.73 8.06 -52.48 -0.42 1.30 15 27 H 0.12 1.70 8.06 -52.49 -0.42 1.28 15 28 H 0.13 2.73 6.57 -52.49 -0.35 2.38 15 LS Contribution 243.48 15.07 3.67 3.67 Total: -1.00 -26.96 243.48 -7.05 -34.01 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -2.55 Total: 6.49 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -2.71 Total: -11.80 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: 0.12 Total: -45.29 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.10 Total: 15.84 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -1.47 Total: -2.92 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -26.96 -7.05 -34.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260710220.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.498 kcal (2) G-P(sol) polarization free energy of solvation -26.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds