Wall clock time and date at job start Mon Mar 30 2020 05:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86811 * 120.00080 * 2 1 4 4 H 1.48499 * 109.47120 * 267.56093 * 3 2 1 5 5 H 1.48501 * 109.46646 * 27.55685 * 3 2 1 6 6 H 1.48492 * 109.47175 * 147.55797 * 3 2 1 7 7 C 1.38753 * 120.00199 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00171 * 340.59213 * 7 2 1 9 9 N 1.36812 * 119.99961 * 160.58923 * 7 2 1 10 10 C 1.47247 * 121.15191 * 334.53864 * 9 7 2 11 11 C 1.53498 * 107.25661 * 221.19619 * 10 9 7 12 12 N 1.46569 * 109.07777 * 298.37041 * 11 10 9 13 13 C 1.39550 * 113.07799 * 53.13767 * 12 11 10 14 14 C 1.39227 * 118.87771 * 156.96991 * 13 12 11 15 15 Cl 1.73594 * 119.89803 * 359.96121 * 14 13 12 16 16 C 1.38176 * 120.20378 * 179.68543 * 14 13 12 17 17 C 1.38372 * 120.33675 * 0.30982 * 16 14 13 18 18 C 1.38123 * 120.02276 * 0.11203 * 17 16 14 19 19 C 1.38946 * 120.00821 * 359.94196 * 18 17 16 20 20 H 0.97003 * 119.99672 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.90424 * 340.63531 * 10 9 7 22 22 H 1.09004 * 109.90268 * 101.76130 * 10 9 7 23 23 H 1.09005 * 109.53508 * 58.24427 * 11 10 9 24 24 H 1.08998 * 109.54087 * 178.40723 * 11 10 9 25 25 H 1.00901 * 110.99930 * 287.93627 * 12 11 10 26 26 H 1.08006 * 119.82990 * 180.28174 * 16 14 13 27 27 H 1.07999 * 119.98768 * 180.14065 * 17 16 14 28 28 H 1.07998 * 119.99413 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.5494 2.0167 -1.3988 5 1 1.4228 2.6671 0.6477 6 1 3.5210 1.4557 0.7510 7 6 2.0100 -1.2016 -0.0005 8 1 1.5161 -2.1105 0.3098 9 7 3.3198 -1.2351 -0.3943 10 6 3.8651 -0.2218 -1.3131 11 6 4.7801 -0.9525 -2.3056 12 7 5.8793 -1.5830 -1.5690 13 6 5.4411 -2.3976 -0.5241 14 6 6.2798 -3.4086 -0.0626 15 17 7.8401 -3.6371 -0.7883 16 6 5.8763 -4.2270 0.9750 17 6 4.6342 -4.0534 1.5596 18 6 3.7893 -3.0596 1.1052 19 6 4.1869 -2.2330 0.0615 20 1 -0.4850 0.8401 0.0004 21 1 3.0526 0.2685 -1.8493 22 1 4.4396 0.5161 -0.7531 23 1 4.2092 -1.7167 -2.8331 24 1 5.1833 -0.2383 -3.0235 25 1 6.5333 -0.8917 -1.2338 26 1 6.5335 -5.0065 1.3312 27 1 4.3254 -4.6948 2.3717 28 1 2.8198 -2.9248 1.5615 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260710220.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:13 Heat of formation + Delta-G solvation = 24.295849 kcal Electronic energy + Delta-G solvation = -14914.342249 eV Core-core repulsion = 12376.528992 eV Total energy + Delta-G solvation = -2537.813257 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.28278 -38.05217 -36.97336 -36.29164 -33.97160 -31.52744 -30.53494 -28.36956 -25.74221 -24.75211 -22.85925 -21.37864 -19.24379 -18.35789 -17.80142 -17.32332 -16.46203 -15.70120 -15.51490 -15.43068 -14.83175 -14.58095 -14.34432 -14.11118 -13.79708 -13.04742 -12.68806 -12.56058 -12.34363 -12.31248 -12.20558 -11.75136 -11.54493 -11.35279 -10.61850 -10.22876 -8.99521 -8.56775 -8.45969 -5.89271 0.46432 0.68748 1.15580 1.29929 1.35066 1.39902 2.11490 2.57448 2.76796 3.07748 3.12551 3.90665 4.02084 4.20465 4.23637 4.42464 4.53142 4.61819 4.71630 4.89962 4.95772 5.27239 5.37017 5.62013 5.76685 5.82597 5.99826 6.15115 6.40769 6.55881 7.17034 7.44248 8.61600 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.036025 B = 0.009055 C = 0.007716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.044951 B = 3091.571283 C = 3628.054713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.001 3.999 3 Si 0.949 3.051 4 H -0.248 1.248 5 H -0.294 1.294 6 H -0.270 1.270 7 C -0.305 4.305 8 H 0.071 0.929 9 N -0.493 5.493 10 C 0.048 3.952 11 C 0.058 3.942 12 N -0.615 5.615 13 C -0.006 4.006 14 C 0.009 3.991 15 Cl -0.063 7.063 16 C -0.189 4.189 17 C -0.068 4.068 18 C -0.203 4.203 19 C 0.163 3.837 20 H 0.278 0.722 21 H 0.083 0.917 22 H 0.058 0.942 23 H 0.069 0.931 24 H 0.126 0.874 25 H 0.354 0.646 26 H 0.147 0.853 27 H 0.149 0.851 28 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.845 -2.086 -1.384 13.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.200 4.200 3 Si 0.774 3.226 4 H -0.173 1.173 5 H -0.221 1.221 6 H -0.196 1.196 7 C -0.432 4.432 8 H 0.089 0.911 9 N -0.188 5.188 10 C -0.077 4.077 11 C -0.071 4.071 12 N -0.243 5.243 13 C -0.110 4.110 14 C -0.021 4.021 15 Cl -0.035 7.035 16 C -0.211 4.211 17 C -0.087 4.087 18 C -0.228 4.228 19 C 0.051 3.949 20 H 0.087 0.913 21 H 0.102 0.898 22 H 0.076 0.924 23 H 0.087 0.913 24 H 0.144 0.856 25 H 0.179 0.821 26 H 0.165 0.835 27 H 0.166 0.834 28 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 12.675 -2.259 -2.027 13.033 hybrid contribution -0.703 1.399 0.738 1.731 sum 11.972 -0.860 -1.289 12.072 Atomic orbital electron populations 1.69904 1.07461 1.28994 1.49085 1.25905 0.95925 1.01454 0.96691 0.85966 0.78136 0.78910 0.79557 1.17288 1.22091 1.19562 1.18836 0.84408 0.95532 1.44468 0.91108 1.42794 1.07187 1.25801 1.43023 1.22942 0.99186 0.92305 0.93222 1.22381 0.91001 0.98513 0.95252 1.57110 1.17009 1.25090 1.25069 1.17786 0.94263 1.01352 0.97551 1.20512 0.87535 0.96525 0.97484 1.98298 1.25858 1.96260 1.83039 1.20722 0.98246 1.02945 0.99154 1.20975 0.92605 0.96145 0.99004 1.20759 1.01792 1.00491 0.99725 1.18383 0.90677 0.92532 0.93323 0.91272 0.89841 0.92370 0.91264 0.85553 0.82074 0.83529 0.83381 0.87603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.80 13.97 21.64 0.30 -52.50 15 2 C 0.00 0.06 5.27 84.85 0.45 0.50 15 3 Si 0.95 41.76 24.13 68.60 1.66 43.42 15 4 H -0.25 -9.72 6.47 99.48 0.64 -9.08 15 5 H -0.29 -12.99 7.11 99.48 0.71 -12.28 15 6 H -0.27 -11.87 6.61 99.48 0.66 -11.21 15 7 C -0.30 -16.62 9.24 84.04 0.78 -15.84 15 8 H 0.07 4.26 6.99 -2.91 -0.02 4.24 15 9 N -0.49 -23.24 2.82 -508.56 -1.43 -24.68 15 10 C 0.05 1.90 4.32 86.40 0.37 2.27 15 11 C 0.06 1.87 6.75 86.53 0.58 2.45 15 12 N -0.61 -19.86 5.87 -337.86 -1.98 -21.85 15 13 C -0.01 -0.23 6.16 38.43 0.24 0.01 15 14 C 0.01 0.29 6.34 22.49 0.14 0.43 15 15 Cl -0.06 -1.80 28.35 -2.72 -0.08 -1.87 15 16 C -0.19 -5.85 9.80 22.29 0.22 -5.63 15 17 C -0.07 -2.25 10.05 22.27 0.22 -2.03 15 18 C -0.20 -8.49 9.23 22.41 0.21 -8.29 15 19 C 0.16 7.12 6.34 38.31 0.24 7.36 15 20 H 0.28 14.90 8.31 -92.71 -0.77 14.13 15 21 H 0.08 3.39 5.30 -2.39 -0.01 3.37 15 22 H 0.06 2.20 6.25 -2.38 -0.01 2.18 15 23 H 0.07 2.44 8.14 -2.38 -0.02 2.42 15 24 H 0.13 2.97 8.14 -2.39 -0.02 2.95 15 25 H 0.35 10.06 8.83 -89.69 -0.79 9.27 15 26 H 0.15 3.65 8.06 -2.91 -0.02 3.63 15 27 H 0.15 3.90 8.06 -2.91 -0.02 3.88 15 28 H 0.11 4.82 6.57 -2.91 -0.02 4.80 15 Total: -1.00 -60.15 243.48 2.21 -57.94 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 0.29 Total: 18.29 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: 3.45 Total: -18.76 kcal Atomic # 7 Polarization: -95.91 SS G_CDS: -3.12 Total: -99.02 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 1.66 Total: 43.42 kcal Atomic # 17 Polarization: -1.80 SS G_CDS: -0.08 Total: -1.87 kcal Total: -60.15 2.21 -57.94 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260710220.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.238 kcal (2) G-P(sol) polarization free energy of solvation -60.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds