Wall clock time and date at job start Mon Mar 30 2020 05:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00593 * 2 1 4 4 H 1.48494 * 109.47392 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46949 * 299.99760 * 3 2 1 6 6 H 1.48506 * 109.47164 * 59.99716 * 3 2 1 7 7 C 1.37884 * 119.99526 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99903 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00080 * 0.02562 * 7 2 1 10 10 C 1.50704 * 109.47150 * 179.97438 * 9 7 2 11 11 C 1.38433 * 119.95674 * 89.99970 * 10 9 7 12 12 F 1.35100 * 119.98290 * 359.97438 * 11 10 9 13 13 C 1.38435 * 120.03523 * 180.02562 * 11 10 9 14 14 C 1.38136 * 120.00411 * 0.06297 * 13 11 10 15 15 C 1.38785 * 120.02290 * 359.96875 * 14 13 11 16 16 C 1.38221 * 119.95622 * 269.97610 * 10 9 7 17 17 C 1.50792 * 119.63391 * 359.65005 * 16 10 9 18 18 O 1.43083 * 109.30380 * 164.07993 * 17 16 10 19 19 C 1.43261 * 113.04174 * 48.59157 * 18 17 16 20 20 O 1.36032 * 119.55806 * 179.82988 * 15 14 13 21 21 H 0.97001 * 119.99095 * 359.97438 * 1 2 3 22 22 H 1.09006 * 109.47380 * 59.99332 * 9 7 2 23 23 H 1.09000 * 109.47160 * 299.99436 * 9 7 2 24 24 H 1.08004 * 119.99781 * 179.79380 * 13 11 10 25 25 H 1.08002 * 119.99202 * 179.97438 * 14 13 11 26 26 H 1.08999 * 109.49577 * 284.02855 * 17 16 10 27 27 H 1.08994 * 109.49905 * 44.13135 * 17 16 10 28 28 H 1.09003 * 109.61542 * 174.80318 * 19 18 17 29 29 H 1.08991 * 109.61699 * 54.26619 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2301 -3.6447 0.0005 11 6 2.6793 -4.1701 1.1999 12 9 2.2400 -3.6554 2.3692 13 6 3.5792 -5.2221 1.2018 14 6 4.0305 -5.7472 0.0065 15 6 3.5816 -5.2210 -1.1967 16 6 2.6782 -4.1696 -1.1970 17 6 2.1758 -3.5950 -2.4975 18 8 3.0289 -4.0215 -3.5640 19 6 3.2863 -5.4307 -3.5468 20 8 4.0349 -5.7430 -2.3682 21 1 -0.4849 0.8401 0.0004 22 1 0.6244 -2.5570 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 3.9318 -5.6294 2.1379 25 1 4.7329 -6.5676 0.0082 26 1 1.1602 -3.9453 -2.6817 27 1 2.1811 -2.5066 -2.4404 28 1 3.8620 -5.7083 -4.4298 29 1 2.3421 -5.9750 -3.5364 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260778929.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:34 Heat of formation + Delta-G solvation = -114.206841 kcal Electronic energy + Delta-G solvation = -16903.853781 eV Core-core repulsion = 13899.405470 eV Total energy + Delta-G solvation = -3004.448311 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.08057 -40.57748 -37.47911 -36.22448 -33.57114 -31.75891 -30.14069 -27.38511 -26.17358 -25.45262 -23.51532 -20.80524 -20.68714 -18.01124 -17.04162 -16.96068 -16.43235 -15.80717 -15.10017 -14.81208 -14.66511 -14.45457 -13.94265 -13.64816 -13.05057 -12.99959 -12.57093 -12.27029 -11.76565 -11.56777 -11.28205 -10.93318 -10.69073 -10.63458 -10.43038 -10.02967 -9.61206 -9.48861 -8.50879 -8.21716 -7.61925 -6.13121 -4.17932 1.53494 1.73325 3.26617 3.34422 3.36234 3.40119 3.80547 4.02862 4.39838 4.76997 4.91605 5.02634 5.16573 5.21724 5.28833 5.48117 5.62762 5.75328 5.96850 6.19350 6.28318 6.51927 6.58956 6.71924 6.90493 7.17457 7.38138 7.51944 7.62690 7.81977 8.16663 8.86651 9.46948 10.96729 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.023598 B = 0.009224 C = 0.007371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.249693 B = 3034.930541 C = 3797.727077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.515 4.515 8 H 0.059 0.941 9 C 0.046 3.954 10 C -0.027 4.027 11 C 0.065 3.935 12 F -0.135 7.135 13 C -0.122 4.122 14 C -0.145 4.145 15 C 0.116 3.884 16 C -0.177 4.177 17 C 0.104 3.896 18 O -0.388 6.388 19 C 0.221 3.779 20 O -0.335 6.335 21 H 0.263 0.737 22 H 0.036 0.964 23 H 0.038 0.962 24 H 0.134 0.866 25 H 0.132 0.868 26 H 0.070 0.930 27 H 0.136 0.864 28 H 0.135 0.865 29 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.740 -10.852 -3.714 12.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.553 4.553 8 H 0.077 0.923 9 C 0.009 3.991 10 C -0.028 4.028 11 C 0.045 3.955 12 F -0.114 7.114 13 C -0.141 4.141 14 C -0.163 4.163 15 C 0.071 3.929 16 C -0.179 4.179 17 C 0.029 3.971 18 O -0.308 6.308 19 C 0.108 3.892 20 O -0.252 6.252 21 H 0.073 0.927 22 H 0.054 0.946 23 H 0.056 0.944 24 H 0.152 0.848 25 H 0.150 0.850 26 H 0.088 0.912 27 H 0.154 0.846 28 H 0.153 0.847 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.799 -10.701 -3.854 12.344 hybrid contribution 0.116 0.923 0.407 1.015 sum 4.915 -9.778 -3.447 11.474 Atomic orbital electron populations 1.69958 1.06049 1.26973 1.49914 1.24983 0.94893 0.99312 0.94794 0.86449 0.80217 0.83214 0.77730 1.19558 1.20778 1.20813 1.20977 0.93090 0.89381 1.51827 0.92279 1.18390 0.92390 0.89076 0.99232 1.20396 0.96994 0.95805 0.89637 1.17422 0.99714 0.96617 0.81727 1.91469 1.88248 1.86270 1.45376 1.20843 0.98061 0.96722 0.98492 1.20066 1.04503 1.02823 0.88943 1.18480 0.95629 0.93130 0.85624 1.19972 1.02644 0.98458 0.96789 1.21713 0.91791 1.02460 0.81154 1.88283 1.69164 1.23448 1.49855 1.24335 0.95290 0.82491 0.87105 1.86189 1.53788 1.70614 1.14610 0.92704 0.94599 0.94391 0.84792 0.84981 0.91243 0.84632 0.84727 0.92510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.70 13.29 55.43 0.74 -24.96 15 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 15 3 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 15 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 15 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 7 C -0.51 -14.16 8.72 -34.44 -0.30 -14.46 15 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 15 9 C 0.05 1.15 4.29 -29.04 -0.12 1.03 15 10 C -0.03 -0.60 5.07 -104.55 -0.53 -1.13 15 11 C 0.06 1.32 7.24 -39.44 -0.29 1.04 15 12 F -0.14 -2.94 16.47 2.25 0.04 -2.91 15 13 C -0.12 -2.04 10.02 -39.55 -0.40 -2.44 15 14 C -0.14 -2.33 9.97 -39.42 -0.39 -2.72 15 15 C 0.12 2.07 6.56 -39.24 -0.26 1.81 15 16 C -0.18 -3.49 5.82 -104.45 -0.61 -4.10 15 17 C 0.10 1.91 5.61 36.05 0.20 2.11 15 18 O -0.39 -6.57 10.97 -59.12 -0.65 -7.22 15 19 C 0.22 2.96 7.95 101.05 0.80 3.76 15 20 O -0.34 -5.40 10.48 -43.73 -0.46 -5.86 15 21 H 0.26 7.16 8.31 -40.82 -0.34 6.82 15 22 H 0.04 0.90 6.89 -51.93 -0.36 0.55 15 23 H 0.04 1.03 7.64 -51.93 -0.40 0.64 15 24 H 0.13 1.82 8.06 -52.48 -0.42 1.39 15 25 H 0.13 1.73 8.06 -52.49 -0.42 1.31 15 26 H 0.07 1.15 8.13 -51.93 -0.42 0.73 15 27 H 0.14 2.77 7.14 -51.93 -0.37 2.40 15 28 H 0.14 1.31 8.14 -51.93 -0.42 0.89 15 29 H 0.06 0.66 8.12 -51.93 -0.42 0.24 15 LS Contribution 257.00 15.07 3.87 3.87 Total: -1.00 -30.22 257.00 -6.25 -36.47 By element: Atomic # 1 Polarization: 0.48 SS G_CDS: -2.78 Total: -2.30 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: -1.99 Total: -13.46 kcal Atomic # 7 Polarization: -25.70 SS G_CDS: 0.74 Total: -24.96 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: -1.11 Total: -13.08 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.04 Total: -2.91 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -30.22 -6.25 -36.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260778929.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.737 kcal (2) G-P(sol) polarization free energy of solvation -30.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds