Wall clock time and date at job start Mon Mar 30 2020 05:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00593 * 2 1 4 4 H 1.48494 * 109.47392 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46949 * 299.99760 * 3 2 1 6 6 H 1.48506 * 109.47164 * 59.99716 * 3 2 1 7 7 C 1.37884 * 119.99526 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99903 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00080 * 0.02562 * 7 2 1 10 10 C 1.50704 * 109.47150 * 179.97438 * 9 7 2 11 11 C 1.38433 * 119.95674 * 89.99970 * 10 9 7 12 12 F 1.35100 * 119.98290 * 359.97438 * 11 10 9 13 13 C 1.38435 * 120.03523 * 180.02562 * 11 10 9 14 14 C 1.38136 * 120.00411 * 0.06297 * 13 11 10 15 15 C 1.38785 * 120.02290 * 359.96875 * 14 13 11 16 16 C 1.38221 * 119.95622 * 269.97610 * 10 9 7 17 17 C 1.50792 * 119.63391 * 359.65005 * 16 10 9 18 18 O 1.43083 * 109.30380 * 164.07993 * 17 16 10 19 19 C 1.43261 * 113.04174 * 48.59157 * 18 17 16 20 20 O 1.36032 * 119.55806 * 179.82988 * 15 14 13 21 21 H 0.97001 * 119.99095 * 359.97438 * 1 2 3 22 22 H 1.09006 * 109.47380 * 59.99332 * 9 7 2 23 23 H 1.09000 * 109.47160 * 299.99436 * 9 7 2 24 24 H 1.08004 * 119.99781 * 179.79380 * 13 11 10 25 25 H 1.08002 * 119.99202 * 179.97438 * 14 13 11 26 26 H 1.08999 * 109.49577 * 284.02855 * 17 16 10 27 27 H 1.08994 * 109.49905 * 44.13135 * 17 16 10 28 28 H 1.09003 * 109.61542 * 174.80318 * 19 18 17 29 29 H 1.08991 * 109.61699 * 54.26619 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2301 -3.6447 0.0005 11 6 2.6793 -4.1701 1.1999 12 9 2.2400 -3.6554 2.3692 13 6 3.5792 -5.2221 1.2018 14 6 4.0305 -5.7472 0.0065 15 6 3.5816 -5.2210 -1.1967 16 6 2.6782 -4.1696 -1.1970 17 6 2.1758 -3.5950 -2.4975 18 8 3.0289 -4.0215 -3.5640 19 6 3.2863 -5.4307 -3.5468 20 8 4.0349 -5.7430 -2.3682 21 1 -0.4849 0.8401 0.0004 22 1 0.6244 -2.5570 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 3.9318 -5.6294 2.1379 25 1 4.7329 -6.5676 0.0082 26 1 1.1602 -3.9453 -2.6817 27 1 2.1811 -2.5066 -2.4404 28 1 3.8620 -5.7083 -4.4298 29 1 2.3421 -5.9750 -3.5364 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260778929.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:33 Heat of formation + Delta-G solvation = -132.896168 kcal Electronic energy + Delta-G solvation = -16904.664211 eV Core-core repulsion = 13899.405470 eV Total energy + Delta-G solvation = -3005.258741 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.69923 -41.91176 -38.87886 -37.56201 -35.47880 -33.47314 -31.63431 -29.17925 -27.50952 -26.77850 -25.40996 -22.35165 -22.11661 -19.37152 -18.63553 -18.41200 -18.31233 -17.16653 -16.62313 -16.52013 -16.24770 -15.95672 -15.30233 -15.08018 -14.57317 -14.46468 -14.25382 -14.03067 -13.30251 -13.27107 -12.99665 -12.65439 -12.51453 -12.28201 -11.95029 -11.69507 -11.40559 -11.09478 -10.65095 -9.73666 -9.08360 -8.25857 -6.38793 0.11088 0.25642 1.36983 1.38161 1.51063 2.11354 2.34941 2.52013 2.70883 3.05842 3.33778 3.60919 3.72339 3.91129 4.08087 4.25424 4.31762 4.34268 4.58710 4.68147 4.90853 5.02704 5.13160 5.21019 5.24163 5.47893 5.66062 5.68133 5.79925 6.07132 6.28252 6.71404 7.29838 8.83929 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.023598 B = 0.009224 C = 0.007371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.249693 B = 3034.930541 C = 3797.727077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.012 3.988 3 Si 0.962 3.038 4 H -0.269 1.269 5 H -0.271 1.271 6 H -0.276 1.276 7 C -0.528 4.528 8 H 0.049 0.951 9 C 0.058 3.942 10 C -0.058 4.058 11 C 0.035 3.965 12 F -0.152 7.152 13 C -0.104 4.104 14 C -0.128 4.128 15 C 0.115 3.885 16 C -0.190 4.190 17 C 0.110 3.890 18 O -0.400 6.400 19 C 0.209 3.791 20 O -0.334 6.334 21 H 0.267 0.733 22 H 0.024 0.976 23 H 0.004 0.996 24 H 0.173 0.827 25 H 0.174 0.826 26 H 0.081 0.919 27 H 0.104 0.896 28 H 0.177 0.823 29 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.716 -12.369 -4.331 14.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.187 4.187 3 Si 0.786 3.214 4 H -0.193 1.193 5 H -0.196 1.196 6 H -0.202 1.202 7 C -0.566 4.566 8 H 0.068 0.932 9 C 0.021 3.979 10 C -0.059 4.059 11 C 0.016 3.984 12 F -0.131 7.131 13 C -0.123 4.123 14 C -0.146 4.146 15 C 0.070 3.930 16 C -0.191 4.191 17 C 0.034 3.966 18 O -0.320 6.320 19 C 0.097 3.903 20 O -0.250 6.250 21 H 0.076 0.924 22 H 0.042 0.958 23 H 0.022 0.978 24 H 0.190 0.810 25 H 0.192 0.808 26 H 0.099 0.901 27 H 0.122 0.878 28 H 0.194 0.806 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.779 -12.233 -4.483 14.686 hybrid contribution -0.458 1.260 0.523 1.439 sum 6.321 -10.973 -3.960 13.268 Atomic orbital electron populations 1.70060 1.07475 1.28052 1.50739 1.25824 0.95739 1.02806 0.94301 0.85444 0.78855 0.78941 0.78156 1.19283 1.19645 1.20196 1.21210 0.92763 0.90918 1.51676 0.93243 1.18045 0.92658 0.90298 0.96850 1.20137 0.98099 0.96118 0.91533 1.17800 1.01486 0.98412 0.80712 1.91418 1.88735 1.86825 1.46080 1.21209 0.95861 0.94596 1.00593 1.20571 1.03632 1.02735 0.87692 1.18685 0.94683 0.92455 0.87161 1.20055 1.03462 0.99401 0.96180 1.21449 0.92779 1.00785 0.81608 1.88255 1.68824 1.25910 1.48969 1.25021 0.97102 0.80722 0.87454 1.86194 1.54046 1.70177 1.14568 0.92358 0.95796 0.97816 0.81007 0.80820 0.90110 0.87790 0.80573 0.90363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.02 13.29 21.45 0.28 -54.74 15 2 C 0.01 0.71 5.46 84.66 0.46 1.17 15 3 Si 0.96 44.59 29.54 68.60 2.03 46.61 15 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 15 5 H -0.27 -12.04 7.11 99.48 0.71 -11.33 15 6 H -0.28 -12.49 7.11 99.48 0.71 -11.79 15 7 C -0.53 -30.25 8.72 25.60 0.22 -30.03 15 8 H 0.05 2.85 7.74 -2.91 -0.02 2.83 15 9 C 0.06 3.11 4.29 29.10 0.12 3.24 15 10 C -0.06 -2.60 5.07 -19.82 -0.10 -2.70 15 11 C 0.04 1.44 7.24 22.36 0.16 1.60 15 12 F -0.15 -6.80 16.47 44.97 0.74 -6.06 15 13 C -0.10 -3.19 10.02 22.29 0.22 -2.97 15 14 C -0.13 -3.61 9.97 22.38 0.22 -3.39 15 15 C 0.12 3.82 6.56 22.49 0.15 3.97 15 16 C -0.19 -7.44 5.82 -19.75 -0.11 -7.56 15 17 C 0.11 4.08 5.61 71.26 0.40 4.48 15 18 O -0.40 -13.02 10.97 -126.14 -1.38 -14.41 15 19 C 0.21 4.92 7.95 113.37 0.90 5.82 15 20 O -0.33 -9.56 10.48 -71.07 -0.74 -10.30 15 21 H 0.27 14.88 8.31 -92.71 -0.77 14.11 15 22 H 0.02 1.29 6.89 -2.38 -0.02 1.27 15 23 H 0.00 0.21 7.64 -2.39 -0.02 0.19 15 24 H 0.17 3.91 8.06 -2.91 -0.02 3.89 15 25 H 0.17 3.50 8.06 -2.91 -0.02 3.48 15 26 H 0.08 2.74 8.13 -2.39 -0.02 2.72 15 27 H 0.10 4.50 7.14 -2.39 -0.02 4.49 15 28 H 0.18 2.65 8.14 -2.39 -0.02 2.63 15 29 H 0.08 1.55 8.12 -2.39 -0.02 1.53 15 Total: -1.00 -67.49 257.00 4.75 -62.74 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: 1.17 Total: 2.51 kcal Atomic # 6 Polarization: -29.01 SS G_CDS: 2.65 Total: -26.36 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: 0.28 Total: -54.74 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -2.13 Total: -24.71 kcal Atomic # 9 Polarization: -6.80 SS G_CDS: 0.74 Total: -6.06 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -67.49 4.75 -62.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260778929.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.155 kcal (2) G-P(sol) polarization free energy of solvation -67.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds