Wall clock time and date at job start Mon Mar 30 2020 05:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86797 * 120.00019 * 2 1 4 4 H 1.48502 * 109.47007 * 275.37704 * 3 2 1 5 5 H 1.48495 * 109.47071 * 35.37836 * 3 2 1 6 6 H 1.48504 * 109.47166 * 155.38073 * 3 2 1 7 7 C 1.39962 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00020 * 341.83110 * 7 2 1 9 9 C 1.41355 * 120.00143 * 161.83067 * 7 2 1 10 10 C 1.41059 * 121.05400 * 330.69861 * 9 7 2 11 11 N 1.31958 * 118.78815 * 179.77433 * 10 9 7 12 12 C 1.32014 * 121.12420 * 0.49912 * 11 10 9 13 13 C 1.50706 * 118.80402 * 179.75507 * 12 11 10 14 14 C 1.53777 * 113.61541 * 320.60194 * 13 12 11 15 15 C 1.54049 * 86.98752 * 140.01482 * 14 13 12 16 16 C 1.53777 * 87.07850 * 334.56580 * 15 14 13 17 17 N 1.31955 * 122.39536 * 359.48495 * 12 11 10 18 18 C 1.32114 * 121.05605 * 0.25019 * 17 12 11 19 19 Cl 1.73602 * 120.62443 * 180.02562 * 18 17 12 20 20 H 0.96997 * 119.99866 * 359.97438 * 1 2 3 21 21 H 1.08000 * 120.60408 * 0.02562 * 10 9 7 22 22 H 1.09001 * 112.85221 * 189.39754 * 13 12 11 23 23 H 1.09004 * 113.61484 * 254.61176 * 14 13 12 24 24 H 1.08999 * 113.61798 * 25.50950 * 14 13 12 25 25 H 1.08996 * 113.61916 * 220.01618 * 15 14 13 26 26 H 1.09004 * 113.68758 * 89.12252 * 15 14 13 27 27 H 1.08999 * 113.61687 * 270.88289 * 16 15 14 28 28 H 1.09002 * 113.61549 * 139.97257 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3761 2.1120 -1.3939 5 1 1.5012 2.6171 0.8106 6 1 3.5921 1.4100 0.5833 7 6 2.0081 -1.2121 -0.0005 8 1 1.5085 -2.1242 0.2907 9 6 3.3688 -1.2425 -0.3823 10 6 3.8868 -0.3093 -1.3046 11 7 5.1649 -0.3758 -1.6259 12 6 5.9516 -1.3006 -1.1076 13 6 7.4021 -1.3319 -1.5155 14 6 7.6289 -1.0369 -3.0076 15 6 8.8568 -0.2135 -2.5747 16 6 8.1532 -0.0226 -1.2207 17 7 5.5154 -2.1954 -0.2414 18 6 4.2529 -2.2086 0.1474 19 17 3.6911 -3.3905 1.2882 20 1 -0.4850 0.8400 0.0004 21 1 3.2498 0.4483 -1.7367 22 1 7.9220 -2.2225 -1.1624 23 1 7.8789 -1.9209 -3.5943 24 1 6.8385 -0.4375 -3.4593 25 1 8.9818 0.7123 -3.1362 26 1 9.7752 -0.7972 -2.5110 27 1 7.5058 0.8535 -1.1848 28 1 8.8261 -0.0884 -0.3658 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260786005.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:01 Heat of formation + Delta-G solvation = 37.937195 kcal Electronic energy + Delta-G solvation = -14474.818335 eV Core-core repulsion = 11937.596611 eV Total energy + Delta-G solvation = -2537.221724 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.057 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.79650 -37.76087 -35.55390 -34.32552 -32.28356 -31.32577 -27.21092 -25.18992 -24.14536 -23.34338 -21.51981 -18.95710 -18.02140 -16.80479 -16.24261 -15.37677 -14.81481 -13.97760 -13.92194 -13.52700 -12.91134 -12.66175 -12.09096 -11.99738 -11.94742 -11.43196 -11.23924 -11.02979 -10.48690 -10.43409 -10.27620 -10.10607 -9.98775 -9.73222 -9.37861 -9.19318 -8.22408 -8.05623 -7.35494 -4.87502 2.05841 2.21822 2.87480 2.96623 2.97549 3.06556 3.65996 4.19974 4.91795 4.98908 5.03750 5.13004 5.36108 5.54564 5.62384 5.93344 6.01607 6.11003 6.20496 6.23042 6.35786 6.38014 6.51787 6.66691 6.83656 7.01510 7.39011 7.76336 7.88721 8.23410 8.36638 9.35151 9.62312 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.024359 B = 0.009694 C = 0.007434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.216390 B = 2887.617042 C = 3765.667708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.083 3.917 3 Si 0.905 3.095 4 H -0.259 1.259 5 H -0.278 1.278 6 H -0.246 1.246 7 C -0.396 4.396 8 H 0.109 0.891 9 C 0.002 3.998 10 C 0.017 3.983 11 N -0.472 5.472 12 C 0.178 3.822 13 C -0.019 4.019 14 C -0.125 4.125 15 C -0.141 4.141 16 C -0.127 4.127 17 N -0.478 5.478 18 C 0.109 3.891 19 Cl -0.059 7.059 20 H 0.295 0.705 21 H 0.147 0.853 22 H 0.096 0.904 23 H 0.059 0.941 24 H 0.092 0.908 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.415 1.550 -1.897 7.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.169 1.169 7 C -0.424 4.424 8 H 0.127 0.873 9 C -0.006 4.006 10 C -0.155 4.155 11 N -0.184 5.184 12 C -0.084 4.084 13 C -0.039 4.039 14 C -0.164 4.164 15 C -0.179 4.179 16 C -0.165 4.165 17 N -0.192 5.192 18 C -0.069 4.069 19 Cl -0.031 7.031 20 H 0.106 0.894 21 H 0.164 0.836 22 H 0.115 0.885 23 H 0.077 0.923 24 H 0.110 0.890 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.102 0.898 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.077 1.502 -2.051 8.468 hybrid contribution -0.942 0.523 0.473 1.177 sum 7.135 2.025 -1.577 7.583 Atomic orbital electron populations 1.69646 1.08127 1.31342 1.30249 1.26258 0.94911 1.01973 0.90958 0.86382 0.81302 0.79479 0.79825 1.18463 1.20460 1.16920 1.19589 0.91859 0.96910 1.33995 0.87330 1.18957 0.94940 0.93162 0.93560 1.22853 0.91533 1.01979 0.99133 1.67276 1.05194 1.21649 1.24283 1.21516 0.95948 0.92498 0.98448 1.20863 0.88644 0.98255 0.96178 1.22978 0.97960 0.99708 0.95709 1.22832 0.97244 1.00149 0.97660 1.22926 0.98553 0.98318 0.96707 1.66799 1.15817 1.24264 1.12299 1.21707 0.89644 0.96701 0.98822 1.98278 1.88133 1.57609 1.59108 0.89430 0.83625 0.88539 0.92251 0.88960 0.91794 0.90711 0.89783 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.43 13.93 55.55 0.77 -17.65 15 2 C 0.08 1.96 5.43 -17.33 -0.09 1.87 15 3 Si 0.91 18.95 24.54 -169.99 -4.17 14.78 15 4 H -0.26 -5.19 6.71 56.52 0.38 -4.81 15 5 H -0.28 -5.54 7.11 56.52 0.40 -5.14 15 6 H -0.25 -5.52 6.84 56.52 0.39 -5.13 15 7 C -0.40 -9.86 9.06 -37.75 -0.34 -10.20 15 8 H 0.11 2.82 7.51 -52.49 -0.39 2.42 15 9 C 0.00 0.05 5.13 -106.49 -0.55 -0.49 15 10 C 0.02 0.40 8.49 -16.43 -0.14 0.26 15 11 N -0.47 -10.89 9.21 -10.10 -0.09 -10.98 15 12 C 0.18 3.98 6.89 -156.87 -1.08 2.90 15 13 C -0.02 -0.34 4.14 -90.95 -0.38 -0.72 15 14 C -0.13 -1.94 7.58 -25.78 -0.20 -2.14 15 15 C -0.14 -1.86 8.09 -25.78 -0.21 -2.07 15 16 C -0.13 -1.98 7.59 -25.92 -0.20 -2.18 15 17 N -0.48 -11.39 10.30 -7.23 -0.07 -11.47 15 18 C 0.11 2.66 7.41 -16.28 -0.12 2.54 15 19 Cl -0.06 -1.28 28.02 -51.86 -1.45 -2.73 15 20 H 0.29 6.27 8.30 -40.82 -0.34 5.93 15 21 H 0.15 3.30 4.77 -52.49 -0.25 3.05 15 22 H 0.10 1.65 8.14 -51.93 -0.42 1.23 15 23 H 0.06 0.84 8.14 -51.93 -0.42 0.41 15 24 H 0.09 1.57 7.44 -51.93 -0.39 1.18 15 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 15 26 H 0.07 0.85 8.14 -51.93 -0.42 0.43 15 27 H 0.08 1.44 7.94 -51.93 -0.41 1.03 15 28 H 0.06 0.87 8.14 -51.93 -0.42 0.44 15 LS Contribution 253.12 15.07 3.81 3.81 Total: -1.00 -25.84 253.12 -7.23 -33.07 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -2.73 Total: 1.39 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -3.30 Total: -10.22 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: 0.61 Total: -40.10 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -4.17 Total: 14.78 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -1.45 Total: -2.73 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -25.84 -7.23 -33.07 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260786005.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.009 kcal (2) G-P(sol) polarization free energy of solvation -25.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds