Wall clock time and date at job start Mon Mar 30 2020 05:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86798 * 119.99843 * 2 1 4 4 H 1.48501 * 109.47311 * 240.00049 * 3 2 1 5 5 H 1.48498 * 109.47224 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47290 * 119.99902 * 3 2 1 7 7 C 1.40103 * 120.00372 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99941 * 186.23400 * 7 2 1 9 9 C 1.41565 * 119.99604 * 6.23835 * 7 2 1 10 10 C 1.40867 * 120.65402 * 173.78168 * 9 7 2 11 11 C 1.38496 * 118.13967 * 179.97438 * 10 9 7 12 12 Cl 1.73604 * 120.38902 * 179.97438 * 11 10 9 13 13 N 1.32554 * 119.22047 * 0.02562 * 11 10 9 14 14 C 1.32013 * 121.27049 * 359.97438 * 13 11 10 15 15 C 1.50711 * 118.96715 * 180.02562 * 14 13 11 16 16 C 1.53777 * 113.61333 * 37.47984 * 15 14 13 17 17 C 1.53783 * 87.07993 * 220.01817 * 16 15 14 18 18 C 1.53784 * 87.08181 * 25.43501 * 17 16 15 19 19 N 1.31393 * 122.06586 * 359.97438 * 14 13 11 20 20 H 0.97003 * 120.00194 * 0.02562 * 1 2 3 21 21 H 1.07999 * 120.92229 * 359.97438 * 10 9 7 22 22 H 1.09002 * 112.84656 * 168.78328 * 15 14 13 23 23 H 1.08998 * 113.61493 * 334.56389 * 16 15 14 24 24 H 1.08996 * 113.61488 * 105.47259 * 16 15 14 25 25 H 1.08997 * 113.61286 * 270.88467 * 17 16 15 26 26 H 1.08996 * 113.61174 * 139.97921 * 17 16 15 27 27 H 1.09000 * 113.60930 * 220.02612 * 18 17 16 28 28 H 1.08989 * 113.61982 * 89.11521 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0944 1.6965 -1.2125 5 1 1.2757 2.7464 -0.0006 6 1 3.0944 1.6965 1.2125 7 6 2.0073 -1.2133 0.0005 8 1 3.0825 -1.2159 0.1021 9 6 1.3058 -2.4357 -0.1321 10 6 2.0024 -3.6529 -0.2642 11 6 1.2640 -4.8178 -0.3901 12 17 2.0626 -6.3502 -0.5570 13 7 -0.0598 -4.7488 -0.3827 14 6 -0.6850 -3.5929 -0.2573 15 6 -2.1920 -3.5747 -0.2547 16 6 -2.8212 -4.7712 0.4783 17 6 -3.8700 -4.8077 -0.6459 18 6 -2.8169 -4.1359 -1.5430 19 7 -0.0347 -2.4579 -0.1336 20 1 -0.4850 0.8400 -0.0004 21 1 3.0821 -3.6769 -0.2672 22 1 -2.6031 -2.6111 0.0463 23 1 -2.1803 -5.6524 0.5062 24 1 -3.2356 -4.5168 1.4538 25 1 -4.7409 -4.1819 -0.4510 26 1 -4.1346 -5.8162 -0.9635 27 1 -3.2279 -3.3685 -2.1990 28 1 -2.1748 -4.8433 -2.0675 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260817967.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:33 Heat of formation + Delta-G solvation = 27.732296 kcal Electronic energy + Delta-G solvation = -14435.223428 eV Core-core repulsion = 11897.559187 eV Total energy + Delta-G solvation = -2537.664241 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.057 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.21397 -39.05682 -37.50246 -35.90955 -33.26261 -32.49473 -28.46487 -27.12913 -26.42289 -24.10429 -23.01756 -20.49847 -19.33103 -18.31764 -16.97667 -16.67353 -16.08486 -15.82589 -15.47220 -15.17751 -14.65948 -13.43751 -13.32610 -13.23544 -13.17862 -13.13419 -12.81681 -12.50647 -12.22817 -11.97027 -11.71154 -11.51618 -11.34843 -11.16965 -10.79976 -10.48648 -9.87266 -9.53532 -8.46951 -6.87107 0.57284 0.80162 0.99000 1.41174 1.54011 1.55705 2.17776 2.71149 3.53380 3.57427 3.78847 3.94379 4.09654 4.24965 4.33753 4.58806 4.81895 4.91043 4.96287 4.99531 5.02754 5.09238 5.10864 5.16219 5.38768 5.65890 5.75428 5.99456 6.41554 6.66360 6.88261 8.06148 8.27056 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.020122 B = 0.009332 C = 0.006580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.191726 B = 2999.718656 C = 4254.531774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.735 5.735 2 C 0.024 3.976 3 Si 0.996 3.004 4 H -0.258 1.258 5 H -0.265 1.265 6 H -0.255 1.255 7 C -0.434 4.434 8 H 0.102 0.898 9 C 0.239 3.761 10 C -0.325 4.325 11 C 0.217 3.783 12 Cl -0.051 7.051 13 N -0.620 5.620 14 C 0.326 3.674 15 C -0.050 4.050 16 C -0.119 4.119 17 C -0.115 4.115 18 C -0.119 4.119 19 N -0.541 5.541 20 H 0.288 0.712 21 H 0.129 0.871 22 H 0.098 0.902 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.099 0.901 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.924 -2.207 -0.651 3.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.356 5.356 2 C -0.201 4.201 3 Si 0.815 3.185 4 H -0.182 1.182 5 H -0.189 1.189 6 H -0.179 1.179 7 C -0.467 4.467 8 H 0.120 0.880 9 C 0.112 3.888 10 C -0.353 4.353 11 C 0.051 3.949 12 Cl -0.023 7.023 13 N -0.346 5.346 14 C 0.056 3.944 15 C -0.071 4.071 16 C -0.157 4.157 17 C -0.152 4.152 18 C -0.157 4.157 19 N -0.261 5.261 20 H 0.099 0.901 21 H 0.147 0.853 22 H 0.116 0.884 23 H 0.095 0.905 24 H 0.089 0.911 25 H 0.118 0.882 26 H 0.101 0.899 27 H 0.089 0.911 28 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.993 -2.200 -0.652 4.605 hybrid contribution 1.683 0.342 -0.021 1.718 sum -2.310 -1.858 -0.673 3.040 Atomic orbital electron populations 1.70137 1.09139 1.30304 1.26048 1.27135 0.95822 1.04854 0.92251 0.85044 0.78590 0.74510 0.80358 1.18164 1.18934 1.17876 1.20128 0.95798 0.89691 1.41097 0.87966 1.19265 0.88598 0.92798 0.88187 1.22317 1.00836 0.92566 1.19598 1.21586 0.90661 0.86259 0.96380 1.98296 1.77422 1.30631 1.95903 1.67158 1.08295 1.30729 1.28462 1.23288 0.97820 0.83269 0.90001 1.21396 0.85316 0.99976 1.00390 1.22835 0.97728 0.96941 0.98205 1.22721 0.96092 1.01668 0.94709 1.22792 0.97978 0.99714 0.95226 1.69195 1.08732 1.27146 1.21025 0.90105 0.85311 0.88416 0.90508 0.91051 0.88227 0.89867 0.91089 0.91469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -37.32 11.55 21.85 0.25 -37.07 15 2 C 0.02 1.17 5.49 85.32 0.47 1.64 15 3 Si 1.00 35.19 29.56 68.60 2.03 37.22 15 4 H -0.26 -8.85 7.11 99.48 0.71 -8.14 15 5 H -0.27 -8.87 7.11 99.48 0.71 -8.16 15 6 H -0.25 -8.65 7.11 99.48 0.71 -7.94 15 7 C -0.43 -22.41 9.19 23.54 0.22 -22.19 15 8 H 0.10 4.82 7.86 -2.91 -0.02 4.80 15 9 C 0.24 13.13 6.57 40.27 0.26 13.39 15 10 C -0.32 -16.27 9.75 22.98 0.22 -16.05 15 11 C 0.22 10.37 7.33 84.65 0.62 10.99 15 12 Cl -0.05 -1.96 29.15 -2.72 -0.08 -2.04 15 13 N -0.62 -30.25 9.25 -179.02 -1.66 -31.91 15 14 C 0.33 16.28 6.88 138.81 0.96 17.23 15 15 C -0.05 -2.03 4.16 -11.01 -0.05 -2.07 15 16 C -0.12 -3.92 7.56 31.12 0.24 -3.69 15 17 C -0.11 -3.02 8.08 31.12 0.25 -2.77 15 18 C -0.12 -3.98 7.60 31.12 0.24 -3.74 15 19 N -0.54 -29.93 7.97 -181.40 -1.45 -31.38 15 20 H 0.29 13.04 8.29 -92.71 -0.77 12.27 15 21 H 0.13 5.88 8.06 -2.91 -0.02 5.86 15 22 H 0.10 4.02 8.14 -2.39 -0.02 4.00 15 23 H 0.08 2.80 7.40 -2.39 -0.02 2.78 15 24 H 0.07 2.14 8.14 -2.39 -0.02 2.12 15 25 H 0.10 2.18 8.14 -2.39 -0.02 2.16 15 26 H 0.08 1.91 8.14 -2.39 -0.02 1.89 15 27 H 0.07 2.21 8.14 -2.39 -0.02 2.19 15 28 H 0.07 2.47 8.00 -2.39 -0.02 2.45 15 Total: -1.00 -59.85 261.74 3.70 -56.15 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: 1.17 Total: 16.28 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: 3.43 Total: -7.26 kcal Atomic # 7 Polarization: -97.51 SS G_CDS: -2.85 Total: -100.36 kcal Atomic # 14 Polarization: 35.19 SS G_CDS: 2.03 Total: 37.22 kcal Atomic # 17 Polarization: -1.96 SS G_CDS: -0.08 Total: -2.04 kcal Total: -59.85 3.70 -56.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260817967.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.882 kcal (2) G-P(sol) polarization free energy of solvation -59.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds