Wall clock time and date at job start Mon Mar 30 2020 05:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86796 * 120.00340 * 2 1 4 4 H 1.48506 * 109.46949 * 264.99818 * 3 2 1 5 5 H 1.48503 * 109.46979 * 24.99297 * 3 2 1 6 6 H 1.48501 * 109.47358 * 144.99402 * 3 2 1 7 7 C 1.40120 * 119.99683 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99879 * 187.03666 * 7 2 1 9 9 C 1.41543 * 120.00324 * 7.03178 * 7 2 1 10 10 C 1.40925 * 120.65693 * 186.99397 * 9 7 2 11 11 C 1.38297 * 118.19128 * 180.02562 * 10 9 7 12 12 C 1.50693 * 120.36795 * 180.02562 * 11 10 9 13 13 C 1.53781 * 113.61690 * 61.75797 * 12 11 10 14 14 C 1.53954 * 87.01990 * 220.04647 * 13 12 11 15 15 C 1.53778 * 113.61360 * 324.15002 * 12 11 10 16 16 N 1.32452 * 119.26400 * 359.97438 * 11 10 9 17 17 C 1.32145 * 121.27783 * 0.02562 * 16 11 10 18 18 Cl 1.73605 * 118.99401 * 180.02562 * 17 16 11 19 19 N 1.31531 * 122.01206 * 359.97438 * 17 16 11 20 20 H 0.97000 * 119.99757 * 359.97438 * 1 2 3 21 21 H 1.08009 * 120.90700 * 0.02562 * 10 9 7 22 22 H 1.08996 * 112.85128 * 192.95154 * 12 11 10 23 23 H 1.09003 * 113.61324 * 334.56318 * 13 12 11 24 24 H 1.09001 * 113.61540 * 105.46955 * 13 12 11 25 25 H 1.08996 * 113.53912 * 270.81068 * 14 13 12 26 26 H 1.09004 * 113.74273 * 139.93878 * 14 13 12 27 27 H 1.09002 * 113.61610 * 254.52984 * 15 12 11 28 28 H 1.08997 * 113.61800 * 25.43515 * 15 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6176 0.0000 4 1 2.5940 1.9852 -1.3948 5 1 1.3893 2.6809 0.5916 6 1 3.4814 1.4729 0.8032 7 6 2.0072 -1.2135 -0.0005 8 1 3.0811 -1.2171 0.1140 9 6 1.3075 -2.4346 -0.1511 10 6 1.9747 -3.6676 -0.0077 11 6 1.2416 -4.8295 -0.1661 12 6 1.9055 -6.1747 -0.0228 13 6 2.4968 -6.4242 1.3747 14 6 3.6933 -7.0816 0.6631 15 6 3.3476 -6.2098 -0.5557 16 7 -0.0508 -4.7469 -0.4440 17 6 -0.6513 -3.5769 -0.5731 18 17 -2.3483 -3.5376 -0.9374 19 7 -0.0029 -2.4411 -0.4330 20 1 -0.4850 0.8401 0.0004 21 1 3.0300 -3.7042 0.2197 22 1 1.2854 -6.9937 -0.3870 23 1 2.7552 -5.5099 1.9091 24 1 1.9119 -7.1179 1.9788 25 1 3.5623 -8.1493 0.4875 26 1 4.6570 -6.8416 1.1123 27 1 3.4487 -6.7307 -1.5078 28 1 3.8390 -5.2369 -0.5500 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260869723.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:12 Heat of formation + Delta-G solvation = 41.825067 kcal Electronic energy + Delta-G solvation = -14367.814919 eV Core-core repulsion = 11830.761786 eV Total energy + Delta-G solvation = -2537.053133 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.057 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.53907 -37.78326 -35.59646 -34.11146 -31.61224 -30.42502 -26.82945 -25.37083 -25.15718 -22.41894 -21.36689 -19.10264 -17.62179 -16.47772 -15.39649 -14.93229 -14.74916 -14.22563 -13.66187 -13.55471 -12.98569 -12.17124 -12.07868 -11.99435 -11.48237 -11.27913 -11.01624 -10.65803 -10.46809 -10.41033 -10.24835 -10.18141 -10.05212 -9.64791 -9.20788 -8.67070 -7.97114 -7.60713 -6.66454 -4.90797 2.44443 2.67711 2.81231 2.98661 3.01337 3.09891 3.78843 4.52857 4.95709 4.99843 5.02994 5.28847 5.57976 5.72549 5.92369 5.97008 6.10797 6.12348 6.23532 6.26138 6.44473 6.53948 6.66390 6.84265 6.93431 7.10323 7.54405 7.87102 8.31157 8.56163 8.83382 9.82032 10.06147 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.019824 B = 0.009254 C = 0.006521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.077544 B = 3025.008821 C = 4292.581831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.701 5.701 2 C 0.068 3.932 3 Si 0.914 3.086 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.413 4.413 8 H 0.093 0.907 9 C 0.279 3.721 10 C -0.315 4.315 11 C 0.186 3.814 12 C -0.054 4.054 13 C -0.127 4.127 14 C -0.141 4.141 15 C -0.131 4.131 16 N -0.614 5.614 17 C 0.375 3.625 18 Cl -0.043 7.043 19 N -0.509 5.509 20 H 0.281 0.719 21 H 0.114 0.886 22 H 0.096 0.904 23 H 0.084 0.916 24 H 0.064 0.936 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.440 -5.012 0.752 6.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.322 5.322 2 C -0.160 4.160 3 Si 0.737 3.263 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.447 4.447 8 H 0.111 0.889 9 C 0.152 3.848 10 C -0.342 4.342 11 C 0.048 3.952 12 C -0.073 4.073 13 C -0.165 4.165 14 C -0.179 4.179 15 C -0.169 4.169 16 N -0.341 5.341 17 C 0.077 3.923 18 Cl -0.015 7.015 19 N -0.232 5.232 20 H 0.092 0.908 21 H 0.132 0.868 22 H 0.114 0.886 23 H 0.103 0.897 24 H 0.083 0.917 25 H 0.095 0.905 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.152 -4.830 0.533 5.792 hybrid contribution 0.890 0.767 0.118 1.181 sum 4.041 -4.063 0.652 5.768 Atomic orbital electron populations 1.70007 1.07465 1.28939 1.25766 1.26156 0.94965 1.01536 0.93346 0.86228 0.80300 0.80043 0.79698 1.19007 1.19923 1.18360 1.19691 0.95072 0.89065 1.40861 0.88915 1.18620 0.86572 0.92360 0.87248 1.22173 1.00916 0.93837 1.17301 1.20519 0.88422 0.93832 0.92403 1.21304 0.94537 0.94349 0.97107 1.22971 0.96756 1.00898 0.95863 1.22840 0.98364 0.99017 0.97673 1.23034 0.95756 1.00654 0.97455 1.67262 1.11233 1.28400 1.27208 1.22507 0.87547 0.86777 0.95455 1.98293 1.11777 1.98575 1.92894 1.68694 1.09104 1.25676 1.19709 0.90776 0.86765 0.88580 0.89728 0.91725 0.90542 0.91604 0.91761 0.89287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.10 11.62 55.55 0.65 -17.46 15 2 C 0.07 1.66 5.48 -17.34 -0.09 1.56 15 3 Si 0.91 17.60 29.57 -169.99 -5.03 12.57 15 4 H -0.27 -5.08 7.11 56.52 0.40 -4.68 15 5 H -0.27 -5.18 7.11 56.52 0.40 -4.78 15 6 H -0.26 -4.86 7.11 56.52 0.40 -4.46 15 7 C -0.41 -10.49 9.19 -37.62 -0.35 -10.84 15 8 H 0.09 2.15 7.86 -52.49 -0.41 1.73 15 9 C 0.28 7.46 6.55 -84.63 -0.55 6.91 15 10 C -0.32 -7.43 8.60 -38.54 -0.33 -7.76 15 11 C 0.19 4.20 6.22 -82.31 -0.51 3.69 15 12 C -0.05 -0.94 4.17 -90.96 -0.38 -1.32 15 13 C -0.13 -1.91 7.57 -25.83 -0.20 -2.10 15 14 C -0.14 -1.77 8.09 -25.83 -0.21 -1.98 15 15 C -0.13 -1.93 7.47 -25.92 -0.19 -2.13 15 16 N -0.61 -15.29 10.32 -7.97 -0.08 -15.38 15 17 C 0.37 9.78 8.17 -92.08 -0.75 9.02 15 18 Cl -0.04 -0.96 29.26 -51.86 -1.52 -2.48 15 19 N -0.51 -14.15 8.12 -9.59 -0.08 -14.23 15 20 H 0.28 6.54 8.29 -40.82 -0.34 6.20 15 21 H 0.11 2.40 6.66 -52.48 -0.35 2.06 15 22 H 0.10 1.66 8.14 -51.93 -0.42 1.24 15 23 H 0.08 1.36 7.80 -51.93 -0.40 0.95 15 24 H 0.06 0.90 8.14 -51.93 -0.42 0.48 15 25 H 0.08 0.84 8.14 -51.93 -0.42 0.42 15 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 15 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 15 28 H 0.09 1.38 6.28 -51.93 -0.33 1.05 15 LS Contribution 259.31 15.07 3.91 3.91 Total: -1.00 -28.56 259.31 -8.46 -37.02 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -2.74 Total: 0.97 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -3.57 Total: -4.94 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: 0.49 Total: -47.06 kcal Atomic # 14 Polarization: 17.60 SS G_CDS: -5.03 Total: 12.57 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.52 Total: -2.48 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -28.56 -8.46 -37.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260869723.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.848 kcal (2) G-P(sol) polarization free energy of solvation -28.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds