Wall clock time and date at job start Mon Mar 30 2020 05:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86796 * 120.00340 * 2 1 4 4 H 1.48506 * 109.46949 * 264.99818 * 3 2 1 5 5 H 1.48503 * 109.46979 * 24.99297 * 3 2 1 6 6 H 1.48501 * 109.47358 * 144.99402 * 3 2 1 7 7 C 1.40120 * 119.99683 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99879 * 187.03666 * 7 2 1 9 9 C 1.41543 * 120.00324 * 7.03178 * 7 2 1 10 10 C 1.40925 * 120.65693 * 186.99397 * 9 7 2 11 11 C 1.38297 * 118.19128 * 180.02562 * 10 9 7 12 12 C 1.50693 * 120.36795 * 180.02562 * 11 10 9 13 13 C 1.53781 * 113.61690 * 61.75797 * 12 11 10 14 14 C 1.53954 * 87.01990 * 220.04647 * 13 12 11 15 15 C 1.53778 * 113.61360 * 324.15002 * 12 11 10 16 16 N 1.32452 * 119.26400 * 359.97438 * 11 10 9 17 17 C 1.32145 * 121.27783 * 0.02562 * 16 11 10 18 18 Cl 1.73605 * 118.99401 * 180.02562 * 17 16 11 19 19 N 1.31531 * 122.01206 * 359.97438 * 17 16 11 20 20 H 0.97000 * 119.99757 * 359.97438 * 1 2 3 21 21 H 1.08009 * 120.90700 * 0.02562 * 10 9 7 22 22 H 1.08996 * 112.85128 * 192.95154 * 12 11 10 23 23 H 1.09003 * 113.61324 * 334.56318 * 13 12 11 24 24 H 1.09001 * 113.61540 * 105.46955 * 13 12 11 25 25 H 1.08996 * 113.53912 * 270.81068 * 14 13 12 26 26 H 1.09004 * 113.74273 * 139.93878 * 14 13 12 27 27 H 1.09002 * 113.61610 * 254.52984 * 15 12 11 28 28 H 1.08997 * 113.61800 * 25.43515 * 15 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6176 0.0000 4 1 2.5940 1.9852 -1.3948 5 1 1.3893 2.6809 0.5916 6 1 3.4814 1.4729 0.8032 7 6 2.0072 -1.2135 -0.0005 8 1 3.0811 -1.2171 0.1140 9 6 1.3075 -2.4346 -0.1511 10 6 1.9747 -3.6676 -0.0077 11 6 1.2416 -4.8295 -0.1661 12 6 1.9055 -6.1747 -0.0228 13 6 2.4968 -6.4242 1.3747 14 6 3.6933 -7.0816 0.6631 15 6 3.3476 -6.2098 -0.5557 16 7 -0.0508 -4.7469 -0.4440 17 6 -0.6513 -3.5769 -0.5731 18 17 -2.3483 -3.5376 -0.9374 19 7 -0.0029 -2.4411 -0.4330 20 1 -0.4850 0.8401 0.0004 21 1 3.0300 -3.7042 0.2197 22 1 1.2854 -6.9937 -0.3870 23 1 2.7552 -5.5099 1.9091 24 1 1.9119 -7.1179 1.9788 25 1 3.5623 -8.1493 0.4875 26 1 4.6570 -6.8416 1.1123 27 1 3.4487 -6.7307 -1.5078 28 1 3.8390 -5.2369 -0.5500 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260869723.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:12 Heat of formation + Delta-G solvation = 25.971349 kcal Electronic energy + Delta-G solvation = -14368.502387 eV Core-core repulsion = 11830.761786 eV Total energy + Delta-G solvation = -2537.740602 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.24155 -39.21431 -37.45732 -35.95534 -33.48163 -32.25757 -28.64085 -26.79947 -26.42847 -24.25271 -23.06374 -20.48387 -19.35428 -18.19261 -17.16887 -16.51787 -16.17360 -15.85357 -15.53778 -15.14334 -14.68829 -13.56766 -13.37814 -13.28998 -13.12548 -12.85948 -12.82647 -12.36223 -12.15985 -11.95369 -11.67685 -11.59905 -11.37624 -11.18989 -10.97505 -10.53609 -9.82960 -9.52459 -8.50093 -6.84138 0.55219 0.87457 0.91199 1.40852 1.53922 1.56450 2.17361 2.70809 3.59157 3.60521 3.78286 3.91561 4.16669 4.18301 4.42921 4.60766 4.73020 4.83225 4.91658 4.97133 5.09719 5.11291 5.15807 5.22279 5.37211 5.64649 5.74161 5.98029 6.44089 6.64689 6.95783 7.89464 8.27091 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.019824 B = 0.009254 C = 0.006521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.077544 B = 3025.008821 C = 4292.581831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.024 3.976 3 Si 0.996 3.004 4 H -0.262 1.262 5 H -0.269 1.269 6 H -0.247 1.247 7 C -0.436 4.436 8 H 0.108 0.892 9 C 0.242 3.758 10 C -0.323 4.323 11 C 0.181 3.819 12 C -0.066 4.066 13 C -0.126 4.126 14 C -0.118 4.118 15 C -0.128 4.128 16 N -0.626 5.626 17 C 0.353 3.647 18 Cl -0.023 7.023 19 N -0.540 5.540 20 H 0.288 0.712 21 H 0.135 0.865 22 H 0.099 0.901 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.099 0.901 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.271 -5.396 1.041 8.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.364 5.364 2 C -0.201 4.201 3 Si 0.815 3.185 4 H -0.187 1.187 5 H -0.193 1.193 6 H -0.170 1.170 7 C -0.469 4.469 8 H 0.126 0.874 9 C 0.115 3.885 10 C -0.349 4.349 11 C 0.044 3.956 12 C -0.086 4.086 13 C -0.164 4.164 14 C -0.156 4.156 15 C -0.166 4.166 16 N -0.353 5.353 17 C 0.055 3.945 18 Cl 0.004 6.996 19 N -0.265 5.265 20 H 0.098 0.902 21 H 0.153 0.847 22 H 0.117 0.883 23 H 0.089 0.911 24 H 0.093 0.907 25 H 0.117 0.883 26 H 0.102 0.898 27 H 0.096 0.904 28 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.992 -5.244 0.826 7.287 hybrid contribution 0.256 0.825 0.021 0.864 sum 5.248 -4.419 0.847 6.913 Atomic orbital electron populations 1.70104 1.09417 1.30400 1.26526 1.27180 0.95680 1.05158 0.92039 0.85004 0.78995 0.74659 0.79823 1.18656 1.19294 1.17039 1.20168 0.95991 0.89618 1.41155 0.87385 1.19207 0.86922 0.94207 0.88148 1.22355 1.01889 0.93265 1.17377 1.21370 0.87754 0.96039 0.90470 1.21583 0.95697 0.91482 0.99790 1.22967 0.98018 1.00941 0.94520 1.22777 0.97946 0.99648 0.95180 1.23027 0.93269 1.01035 0.99284 1.67434 1.12417 1.27761 1.27715 1.22934 0.88707 0.87090 0.95725 1.98276 1.10019 1.98574 1.92730 1.68675 1.10046 1.26625 1.21133 0.90152 0.84749 0.88312 0.91089 0.90683 0.88270 0.89757 0.90413 0.90258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -39.07 11.62 21.85 0.25 -38.82 15 2 C 0.02 1.17 5.48 85.32 0.47 1.63 15 3 Si 1.00 35.57 29.57 68.60 2.03 37.60 15 4 H -0.26 -9.16 7.11 99.48 0.71 -8.45 15 5 H -0.27 -9.23 7.11 99.48 0.71 -8.52 15 6 H -0.25 -8.25 7.11 99.48 0.71 -7.54 15 7 C -0.44 -22.33 9.19 23.54 0.22 -22.11 15 8 H 0.11 4.97 7.86 -2.91 -0.02 4.94 15 9 C 0.24 13.20 6.55 40.28 0.26 13.46 15 10 C -0.32 -15.32 8.60 22.94 0.20 -15.13 15 11 C 0.18 8.18 6.22 42.48 0.26 8.45 15 12 C -0.07 -2.24 4.17 -11.02 -0.05 -2.28 15 13 C -0.13 -3.53 7.57 31.18 0.24 -3.30 15 14 C -0.12 -2.52 8.09 31.18 0.25 -2.27 15 15 C -0.13 -3.47 7.47 31.12 0.23 -3.24 15 16 N -0.63 -31.56 10.32 -179.13 -1.85 -33.41 15 17 C 0.35 18.84 8.17 180.86 1.48 20.32 15 18 Cl -0.02 -1.07 29.26 -2.72 -0.08 -1.15 15 19 N -0.54 -30.91 8.12 -184.25 -1.50 -32.41 15 20 H 0.29 13.60 8.29 -92.71 -0.77 12.83 15 21 H 0.13 5.62 6.66 -2.91 -0.02 5.60 15 22 H 0.10 3.26 8.14 -2.39 -0.02 3.24 15 23 H 0.07 2.18 7.80 -2.39 -0.02 2.16 15 24 H 0.07 1.93 8.14 -2.39 -0.02 1.91 15 25 H 0.10 1.72 8.14 -2.39 -0.02 1.70 15 26 H 0.08 1.55 8.14 -2.38 -0.02 1.53 15 27 H 0.08 1.89 8.14 -2.39 -0.02 1.87 15 28 H 0.08 2.31 6.28 -2.39 -0.02 2.29 15 Total: -1.00 -62.69 259.31 3.60 -59.09 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: 1.18 Total: 13.55 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: 3.56 Total: -4.46 kcal Atomic # 7 Polarization: -101.54 SS G_CDS: -3.09 Total: -104.64 kcal Atomic # 14 Polarization: 35.57 SS G_CDS: 2.03 Total: 37.60 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -0.08 Total: -1.15 kcal Total: -62.69 3.60 -59.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260869723.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.064 kcal (2) G-P(sol) polarization free energy of solvation -62.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds