Wall clock time and date at job start Mon Mar 30 2020 05:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99943 * 2 1 4 4 H 1.48501 * 109.47460 * 269.99859 * 3 2 1 5 5 H 1.48499 * 109.47301 * 30.00162 * 3 2 1 6 6 H 1.48503 * 109.46964 * 150.00141 * 3 2 1 7 7 C 1.37876 * 119.99771 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00374 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99780 * 180.02562 * 7 2 1 10 10 C 1.50704 * 109.47018 * 180.02562 * 9 7 2 11 11 C 1.38413 * 119.97598 * 89.99553 * 10 9 7 12 12 F 1.35104 * 119.97172 * 359.97438 * 11 10 9 13 13 C 1.38409 * 120.06110 * 180.24887 * 11 10 9 14 14 C 1.38241 * 120.08225 * 359.55544 * 13 11 10 15 15 C 1.38637 * 120.09807 * 0.49433 * 14 13 11 16 16 C 1.38662 * 119.97036 * 269.97664 * 10 9 7 17 17 O 1.36102 * 119.38757 * 359.64576 * 16 10 9 18 18 C 1.43165 * 116.72719 * 162.88586 * 17 16 10 19 19 C 1.53475 * 108.25818 * 46.20362 * 18 17 16 20 20 O 1.36164 * 119.37333 * 179.46719 * 15 14 13 21 21 H 0.96997 * 119.99929 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.47418 * 59.99511 * 9 7 2 23 23 H 1.09004 * 109.46720 * 299.99356 * 9 7 2 24 24 H 1.08000 * 119.96173 * 179.78915 * 13 11 10 25 25 H 1.07998 * 119.95105 * 180.24363 * 14 13 11 26 26 H 1.09005 * 109.70629 * 286.51677 * 18 17 16 27 27 H 1.08996 * 109.71090 * 165.89336 * 18 17 16 28 28 H 1.09002 * 109.70724 * 180.59558 * 19 18 17 29 29 H 1.08994 * 109.70811 * 59.96799 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0139 -2.6149 -0.0013 11 6 4.2447 -3.2656 -1.2010 12 9 4.0191 -2.6266 -2.3698 13 6 4.7012 -4.5723 -1.2043 14 6 4.9362 -5.2272 -0.0098 15 6 4.7057 -4.5806 1.1947 16 6 4.2447 -3.2692 1.1992 17 8 4.0204 -2.6139 2.3708 18 6 3.9059 -3.4206 3.5480 19 6 5.0504 -4.4430 3.5436 20 8 4.9317 -5.2434 2.3625 21 1 -0.4850 0.8400 -0.0004 22 1 3.8746 -0.6808 0.8904 23 1 3.8752 -0.6797 -0.8896 24 1 4.8775 -5.0796 -2.1413 25 1 5.2961 -6.2455 -0.0149 26 1 2.9481 -3.9411 3.5451 27 1 3.9796 -2.7903 4.4342 28 1 4.9795 -5.0780 4.4267 29 1 6.0081 -3.9226 3.5404 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260882202.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:17 Heat of formation + Delta-G solvation = -94.157930 kcal Electronic energy + Delta-G solvation = -16952.967877 eV Core-core repulsion = 13949.388952 eV Total energy + Delta-G solvation = -3003.578925 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.17198 -40.89500 -37.27747 -36.91866 -33.32276 -31.39598 -30.73701 -27.90935 -27.65027 -24.46672 -23.27527 -20.96032 -20.49110 -18.25579 -17.46715 -16.97269 -16.79766 -15.77433 -15.14708 -14.74772 -14.67696 -14.53058 -14.19961 -13.98635 -13.16446 -13.13197 -12.69802 -12.33884 -12.23869 -11.63026 -11.29485 -10.88274 -10.79990 -10.60666 -10.42435 -9.97364 -9.84290 -9.36337 -8.53216 -7.83771 -7.63329 -6.03022 -4.01102 1.56706 1.64764 3.25186 3.33218 3.39615 3.43856 3.48355 4.01254 4.41693 4.46351 4.84933 4.93123 4.97891 5.03541 5.26680 5.31028 5.43629 5.59974 5.65201 5.85107 6.07136 6.29447 6.48720 6.60686 6.97918 7.07340 7.21333 7.35613 7.70421 7.76720 8.51545 8.99515 9.56999 11.10133 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.024653 B = 0.009645 C = 0.007649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.513121 B = 2902.220000 C = 3659.624319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.071 3.929 3 Si 0.876 3.124 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.505 4.505 8 H 0.071 0.929 9 C 0.023 3.977 10 C -0.062 4.062 11 C 0.099 3.901 12 F -0.130 7.130 13 C -0.153 4.153 14 C -0.109 4.109 15 C 0.032 3.968 16 C 0.078 3.922 17 O -0.285 6.285 18 C 0.019 3.981 19 C 0.021 3.979 20 O -0.310 6.310 21 H 0.264 0.736 22 H 0.039 0.961 23 H 0.028 0.972 24 H 0.137 0.863 25 H 0.136 0.864 26 H 0.077 0.923 27 H 0.118 0.882 28 H 0.117 0.883 29 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.254 -8.808 5.156 15.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.130 4.130 3 Si 0.703 3.297 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.543 4.543 8 H 0.090 0.910 9 C -0.014 4.014 10 C -0.064 4.064 11 C 0.080 3.920 12 F -0.109 7.109 13 C -0.172 4.172 14 C -0.128 4.128 15 C -0.012 4.012 16 C 0.032 3.968 17 O -0.199 6.199 18 C -0.057 4.057 19 C -0.055 4.055 20 O -0.225 6.225 21 H 0.074 0.926 22 H 0.057 0.943 23 H 0.047 0.953 24 H 0.155 0.845 25 H 0.153 0.847 26 H 0.095 0.905 27 H 0.136 0.864 28 H 0.135 0.865 29 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.080 -8.653 5.181 14.983 hybrid contribution 0.188 0.949 0.050 0.968 sum 11.267 -7.705 5.231 14.618 Atomic orbital electron populations 1.69894 1.06200 1.26898 1.50991 1.24925 0.94721 0.98904 0.94468 0.86822 0.80484 0.83672 0.78700 1.20055 1.21217 1.18873 1.20800 0.87806 0.94651 1.51016 0.91044 1.18628 0.97789 0.87007 0.98002 1.19633 0.97926 1.00342 0.88452 1.17101 1.02814 0.90949 0.81170 1.91482 1.92445 1.81859 1.45084 1.20759 1.04361 0.93458 0.98623 1.19961 1.03807 1.00525 0.88495 1.18820 1.03722 0.91893 0.86807 1.18331 1.00773 0.90855 0.86843 1.86444 1.87446 1.33035 1.12953 1.23599 0.98831 0.94820 0.88410 1.23592 0.99165 0.95086 0.87630 1.86257 1.88313 1.34187 1.13758 0.92647 0.94272 0.95345 0.84505 0.84652 0.90470 0.86370 0.86524 0.90834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.20 13.96 55.43 0.77 -27.43 15 2 C 0.07 2.12 5.47 -17.82 -0.10 2.02 15 3 Si 0.88 22.10 27.47 -169.99 -4.67 17.43 15 4 H -0.27 -6.80 7.11 56.52 0.40 -6.40 15 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 15 6 H -0.26 -6.41 6.54 56.52 0.37 -6.04 15 7 C -0.50 -14.93 9.65 -34.44 -0.33 -15.27 15 8 H 0.07 2.31 7.98 -52.49 -0.42 1.89 15 9 C 0.02 0.58 3.76 -29.03 -0.11 0.47 15 10 C -0.06 -1.39 5.09 -104.40 -0.53 -1.93 15 11 C 0.10 2.03 7.24 -39.45 -0.29 1.74 15 12 F -0.13 -2.79 16.47 2.25 0.04 -2.75 15 13 C -0.15 -2.51 10.02 -39.52 -0.40 -2.91 15 14 C -0.11 -1.71 9.96 -39.43 -0.39 -2.10 15 15 C 0.03 0.56 6.49 -39.15 -0.25 0.31 15 16 C 0.08 1.58 6.47 -39.14 -0.25 1.32 15 17 O -0.29 -5.62 9.40 -32.85 -0.31 -5.93 15 18 C 0.02 0.27 7.26 37.40 0.27 0.54 15 19 C 0.02 0.25 7.26 37.40 0.27 0.52 15 20 O -0.31 -4.73 10.42 -33.05 -0.34 -5.08 15 21 H 0.26 7.69 8.31 -40.82 -0.34 7.35 15 22 H 0.04 1.00 6.55 -51.93 -0.34 0.66 15 23 H 0.03 0.72 7.06 -51.93 -0.37 0.35 15 24 H 0.14 1.80 8.06 -52.49 -0.42 1.38 15 25 H 0.14 1.69 8.06 -52.49 -0.42 1.27 15 26 H 0.08 1.08 8.14 -51.93 -0.42 0.66 15 27 H 0.12 1.24 8.14 -51.93 -0.42 0.82 15 28 H 0.12 0.93 8.14 -51.93 -0.42 0.50 15 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 15 LS Contribution 255.72 15.07 3.85 3.85 Total: -1.00 -33.45 255.72 -5.60 -39.05 By element: Atomic # 1 Polarization: -1.03 SS G_CDS: -2.83 Total: -3.86 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -2.11 Total: -15.28 kcal Atomic # 7 Polarization: -28.20 SS G_CDS: 0.77 Total: -27.43 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: -0.65 Total: -11.01 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.04 Total: -2.75 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -33.45 -5.60 -39.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260882202.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.112 kcal (2) G-P(sol) polarization free energy of solvation -33.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds