Wall clock time and date at job start Mon Mar 30 2020 05:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99943 * 2 1 4 4 H 1.48501 * 109.47460 * 269.99859 * 3 2 1 5 5 H 1.48499 * 109.47301 * 30.00162 * 3 2 1 6 6 H 1.48503 * 109.46964 * 150.00141 * 3 2 1 7 7 C 1.37876 * 119.99771 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00374 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99780 * 180.02562 * 7 2 1 10 10 C 1.50704 * 109.47018 * 180.02562 * 9 7 2 11 11 C 1.38413 * 119.97598 * 89.99553 * 10 9 7 12 12 F 1.35104 * 119.97172 * 359.97438 * 11 10 9 13 13 C 1.38409 * 120.06110 * 180.24887 * 11 10 9 14 14 C 1.38241 * 120.08225 * 359.55544 * 13 11 10 15 15 C 1.38637 * 120.09807 * 0.49433 * 14 13 11 16 16 C 1.38662 * 119.97036 * 269.97664 * 10 9 7 17 17 O 1.36102 * 119.38757 * 359.64576 * 16 10 9 18 18 C 1.43165 * 116.72719 * 162.88586 * 17 16 10 19 19 C 1.53475 * 108.25818 * 46.20362 * 18 17 16 20 20 O 1.36164 * 119.37333 * 179.46719 * 15 14 13 21 21 H 0.96997 * 119.99929 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.47418 * 59.99511 * 9 7 2 23 23 H 1.09004 * 109.46720 * 299.99356 * 9 7 2 24 24 H 1.08000 * 119.96173 * 179.78915 * 13 11 10 25 25 H 1.07998 * 119.95105 * 180.24363 * 14 13 11 26 26 H 1.09005 * 109.70629 * 286.51677 * 18 17 16 27 27 H 1.08996 * 109.71090 * 165.89336 * 18 17 16 28 28 H 1.09002 * 109.70724 * 180.59558 * 19 18 17 29 29 H 1.08994 * 109.70811 * 59.96799 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0139 -2.6149 -0.0013 11 6 4.2447 -3.2656 -1.2010 12 9 4.0191 -2.6266 -2.3698 13 6 4.7012 -4.5723 -1.2043 14 6 4.9362 -5.2272 -0.0098 15 6 4.7057 -4.5806 1.1947 16 6 4.2447 -3.2692 1.1992 17 8 4.0204 -2.6139 2.3708 18 6 3.9059 -3.4206 3.5480 19 6 5.0504 -4.4430 3.5436 20 8 4.9317 -5.2434 2.3625 21 1 -0.4850 0.8400 -0.0004 22 1 3.8746 -0.6808 0.8904 23 1 3.8752 -0.6797 -0.8896 24 1 4.8775 -5.0796 -2.1413 25 1 5.2961 -6.2455 -0.0149 26 1 2.9481 -3.9411 3.5451 27 1 3.9796 -2.7903 4.4342 28 1 4.9795 -5.0780 4.4267 29 1 6.0081 -3.9226 3.5404 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260882202.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:17 Heat of formation + Delta-G solvation = -116.869709 kcal Electronic energy + Delta-G solvation = -16953.952733 eV Core-core repulsion = 13949.388952 eV Total energy + Delta-G solvation = -3004.563781 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.76247 -42.18310 -38.63117 -38.23093 -35.37328 -33.27448 -31.91689 -29.52430 -29.16116 -25.73012 -25.11704 -22.47844 -21.91128 -19.59333 -19.07507 -18.76596 -18.32920 -17.14968 -16.65603 -16.40710 -16.05227 -15.95213 -15.75096 -15.27061 -15.00404 -14.42680 -14.24737 -14.08339 -13.62438 -13.50080 -12.94038 -12.52337 -12.40166 -12.07441 -11.90846 -11.79702 -11.56614 -11.27985 -10.82023 -9.38254 -9.00016 -8.33466 -6.37765 0.14982 0.22389 1.31945 1.33790 1.46132 2.04847 2.28660 2.32307 2.59864 3.00326 3.30219 3.48596 3.68542 3.97614 3.99262 4.13002 4.20852 4.35325 4.54355 4.62611 4.73383 4.84753 5.02951 5.09369 5.13968 5.40357 5.49707 5.70029 5.95376 6.18033 6.43956 6.63928 7.24347 8.83400 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.024653 B = 0.009645 C = 0.007649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.513121 B = 2902.220000 C = 3659.624319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.011 3.989 3 Si 0.948 3.052 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.250 1.250 7 C -0.513 4.513 8 H 0.024 0.976 9 C 0.034 3.966 10 C -0.108 4.108 11 C 0.073 3.927 12 F -0.145 7.145 13 C -0.137 4.137 14 C -0.093 4.093 15 C 0.036 3.964 16 C 0.062 3.938 17 O -0.320 6.320 18 C 0.007 3.993 19 C 0.022 3.978 20 O -0.311 6.311 21 H 0.269 0.731 22 H 0.034 0.966 23 H 0.025 0.975 24 H 0.176 0.824 25 H 0.179 0.821 26 H 0.068 0.932 27 H 0.150 0.850 28 H 0.162 0.838 29 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.475 -9.969 5.997 17.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.186 4.186 3 Si 0.770 3.230 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.174 1.174 7 C -0.551 4.551 8 H 0.042 0.958 9 C -0.003 4.003 10 C -0.110 4.110 11 C 0.054 3.946 12 F -0.124 7.124 13 C -0.156 4.156 14 C -0.112 4.112 15 C -0.010 4.010 16 C 0.016 3.984 17 O -0.235 6.235 18 C -0.068 4.068 19 C -0.052 4.052 20 O -0.226 6.226 21 H 0.078 0.922 22 H 0.052 0.948 23 H 0.043 0.957 24 H 0.193 0.807 25 H 0.196 0.804 26 H 0.086 0.914 27 H 0.168 0.832 28 H 0.180 0.820 29 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 13.312 -9.833 6.038 17.617 hybrid contribution -0.531 1.147 -0.101 1.268 sum 12.781 -8.687 5.937 16.555 Atomic orbital electron populations 1.70041 1.08096 1.28300 1.52264 1.25906 0.95659 1.03182 0.93834 0.85697 0.79507 0.78326 0.79446 1.18912 1.20023 1.17406 1.20985 0.90247 0.92987 1.50902 0.95774 1.18327 0.94836 0.89849 0.97267 1.19568 1.01321 0.99455 0.90643 1.17486 1.04412 0.92601 0.80118 1.91432 1.92817 1.82449 1.45670 1.21147 1.02134 0.91501 1.00769 1.20508 1.01471 1.01917 0.87271 1.19012 1.02664 0.90746 0.88542 1.18463 1.01374 0.92069 0.86487 1.86366 1.87619 1.35339 1.14182 1.24013 0.99546 0.95816 0.87424 1.23939 0.98502 0.95203 0.87605 1.86256 1.87841 1.34573 1.13892 0.92227 0.94771 0.95706 0.80711 0.80360 0.91352 0.83240 0.82044 0.89655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.34 13.96 21.45 0.30 -61.04 15 2 C 0.01 0.69 5.47 84.65 0.46 1.16 15 3 Si 0.95 46.35 27.47 68.60 1.88 48.23 15 4 H -0.26 -12.41 7.11 99.48 0.71 -11.70 15 5 H -0.28 -12.85 7.11 99.48 0.71 -12.15 15 6 H -0.25 -11.58 6.54 99.48 0.65 -10.93 15 7 C -0.51 -31.89 9.65 25.60 0.25 -31.65 15 8 H 0.02 1.66 7.98 -2.91 -0.02 1.64 15 9 C 0.03 1.82 3.76 29.11 0.11 1.93 15 10 C -0.11 -5.01 5.09 -19.72 -0.10 -5.11 15 11 C 0.07 3.01 7.24 22.35 0.16 3.17 15 12 F -0.14 -6.35 16.47 44.97 0.74 -5.61 15 13 C -0.14 -4.17 10.02 22.31 0.22 -3.95 15 14 C -0.09 -2.60 9.96 22.37 0.22 -2.38 15 15 C 0.04 1.18 6.49 22.55 0.15 1.32 15 16 C 0.06 2.52 6.47 22.56 0.15 2.66 15 17 O -0.32 -12.76 9.40 -82.49 -0.78 -13.53 15 18 C 0.01 0.18 7.26 72.14 0.52 0.70 15 19 C 0.02 0.44 7.26 72.14 0.52 0.97 15 20 O -0.31 -8.48 10.42 -83.20 -0.87 -9.35 15 21 H 0.27 16.09 8.31 -92.71 -0.77 15.32 15 22 H 0.03 1.80 6.55 -2.39 -0.02 1.78 15 23 H 0.02 1.29 7.06 -2.38 -0.02 1.28 15 24 H 0.18 3.92 8.06 -2.91 -0.02 3.89 15 25 H 0.18 3.45 8.06 -2.91 -0.02 3.43 15 26 H 0.07 1.88 8.14 -2.38 -0.02 1.86 15 27 H 0.15 2.84 8.14 -2.39 -0.02 2.82 15 28 H 0.16 1.80 8.14 -2.39 -0.02 1.78 15 29 H 0.09 1.57 8.14 -2.39 -0.02 1.55 15 Total: -1.00 -76.96 255.72 5.06 -71.89 By element: Atomic # 1 Polarization: -0.53 SS G_CDS: 1.11 Total: 0.58 kcal Atomic # 6 Polarization: -33.84 SS G_CDS: 2.67 Total: -31.17 kcal Atomic # 7 Polarization: -61.34 SS G_CDS: 0.30 Total: -61.04 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -1.64 Total: -22.88 kcal Atomic # 9 Polarization: -6.35 SS G_CDS: 0.74 Total: -5.61 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 1.88 Total: 48.23 kcal Total: -76.96 5.06 -71.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260882202.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.975 kcal (2) G-P(sol) polarization free energy of solvation -76.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds