Wall clock time and date at job start Mon Mar 30 2020 05:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46997 * 180.02562 * 9 7 2 11 11 H 1.08998 * 110.66849 * 51.77794 * 10 9 7 12 12 C 1.54712 * 110.75057 * 174.99778 * 10 9 7 13 13 C 1.51646 * 101.90998 * 143.68411 * 12 10 9 14 14 C 1.37749 * 132.16761 * 164.30247 * 13 12 10 15 15 C 1.38444 * 119.96749 * 180.33208 * 14 13 12 16 16 Cl 1.73604 * 120.12595 * 179.97438 * 15 14 13 17 17 C 1.38386 * 119.74339 * 359.97438 * 15 14 13 18 18 C 1.37931 * 120.33514 * 359.84650 * 17 15 14 19 19 C 1.38876 * 107.03766 * 344.32425 * 13 12 10 20 20 O 1.36160 * 111.24769 * 359.35282 * 19 13 12 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 23 23 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 24 24 H 1.09000 * 110.93716 * 261.83746 * 12 10 9 25 25 H 1.08996 * 110.93704 * 25.49462 * 12 10 9 26 26 H 1.07992 * 120.01159 * 0.32188 * 14 13 12 27 27 H 1.08005 * 119.83457 * 179.87506 * 17 15 14 28 28 H 1.07994 * 119.87245 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 1 3.5552 -3.2087 -0.8034 12 6 5.5631 -2.6728 -0.1270 13 6 5.9217 -3.8504 0.7587 14 6 7.0706 -4.6007 0.8793 15 6 7.1217 -5.6466 1.7849 16 17 8.5673 -6.5953 1.9398 17 6 6.0159 -5.9328 2.5662 18 6 4.8662 -5.1798 2.4489 19 6 4.8079 -4.1247 1.5416 20 8 3.7913 -3.2594 1.2738 21 1 -0.4850 0.8401 0.0004 22 1 3.8752 -0.6797 -0.8895 23 1 3.8746 -0.6808 0.8905 24 1 5.8658 -2.8545 -1.1582 25 1 6.0064 -1.7514 0.2506 26 1 7.9310 -4.3732 0.2675 27 1 6.0534 -6.7497 3.2717 28 1 4.0076 -5.4100 3.0620 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261046369.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:27 Heat of formation + Delta-G solvation = -21.917938 kcal Electronic energy + Delta-G solvation = -14095.616638 eV Core-core repulsion = 11523.506650 eV Total energy + Delta-G solvation = -2572.109988 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.84765 -37.67950 -36.13371 -33.45965 -32.41868 -30.68825 -29.71950 -27.34102 -23.48984 -22.24735 -21.56750 -20.56108 -17.21202 -16.95278 -16.61904 -15.95554 -15.13974 -14.15738 -14.01715 -13.72305 -13.22709 -13.03465 -12.77521 -12.41586 -12.23479 -11.96934 -11.67253 -11.42812 -11.22098 -10.78817 -10.52915 -10.40616 -9.93760 -9.75527 -9.31381 -8.94528 -8.61219 -7.84563 -6.09931 -4.09117 1.23206 1.28486 2.12793 3.26143 3.33541 3.33826 3.54748 3.75787 4.38225 4.58268 4.80937 4.98362 5.19870 5.20861 5.26826 5.46213 5.58412 5.84187 5.94158 6.05578 6.17825 6.24017 6.25473 6.47799 6.53041 6.92092 7.08390 7.53204 7.67756 8.44269 8.94797 9.49833 11.03329 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.060670 B = 0.005082 C = 0.004837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.403987 B = 5507.800509 C = 5787.888068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.068 3.932 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.266 1.266 6 H -0.286 1.286 7 C -0.520 4.520 8 H 0.076 0.924 9 C -0.012 4.012 10 C 0.099 3.901 11 H 0.085 0.915 12 C -0.111 4.111 13 C -0.169 4.169 14 C -0.061 4.061 15 C -0.078 4.078 16 Cl -0.080 7.080 17 C -0.075 4.075 18 C -0.139 4.139 19 C 0.129 3.871 20 O -0.278 6.278 21 H 0.264 0.736 22 H 0.040 0.960 23 H 0.025 0.975 24 H 0.089 0.911 25 H 0.091 0.909 26 H 0.131 0.869 27 H 0.137 0.863 28 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.994 -9.764 2.287 18.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.190 1.190 6 H -0.212 1.212 7 C -0.558 4.558 8 H 0.094 0.906 9 C -0.049 4.049 10 C 0.044 3.956 11 H 0.103 0.897 12 C -0.148 4.148 13 C -0.170 4.170 14 C -0.080 4.080 15 C -0.105 4.105 16 Cl -0.051 7.051 17 C -0.094 4.094 18 C -0.158 4.158 19 C 0.081 3.919 20 O -0.191 6.191 21 H 0.074 0.926 22 H 0.058 0.942 23 H 0.044 0.956 24 H 0.107 0.893 25 H 0.110 0.890 26 H 0.148 0.852 27 H 0.154 0.846 28 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 14.741 -9.647 2.408 17.781 hybrid contribution 0.576 0.848 -0.046 1.026 sum 15.316 -8.800 2.361 17.821 Atomic orbital electron populations 1.69905 1.06261 1.26966 1.50591 1.25003 0.94777 0.99063 0.94490 0.86806 0.80256 0.83745 0.78634 1.20171 1.19046 1.21213 1.20995 0.88685 0.94852 1.51265 0.90611 1.19789 0.98463 0.88866 0.97752 1.23620 0.91689 0.97505 0.82794 0.89671 1.22047 0.97371 0.95850 0.99555 1.20881 0.94269 0.99604 1.02260 1.20060 0.97296 0.93341 0.97278 1.20511 0.89258 0.98013 1.02701 1.98337 1.37511 1.71856 1.97444 1.20663 0.90830 0.99460 0.98397 1.20198 0.99267 0.94667 1.01653 1.19948 0.87945 0.89824 0.94187 1.87094 1.42399 1.51586 1.37996 0.92602 0.94187 0.95642 0.89255 0.89037 0.85151 0.84555 0.84531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.41 13.96 55.43 0.77 -26.63 15 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 15 3 Si 0.88 21.11 27.47 -169.99 -4.67 16.44 15 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 5 H -0.27 -5.98 6.54 56.52 0.37 -5.61 15 6 H -0.29 -6.83 7.11 56.52 0.40 -6.42 15 7 C -0.52 -14.56 9.60 -34.44 -0.33 -14.89 15 8 H 0.08 2.32 7.99 -52.49 -0.42 1.90 15 9 C -0.01 -0.27 3.73 -27.88 -0.10 -0.37 15 10 C 0.10 1.94 3.51 -25.83 -0.09 1.85 15 11 H 0.09 1.64 8.14 -51.93 -0.42 1.22 15 12 C -0.11 -1.72 6.65 -26.52 -0.18 -1.89 15 13 C -0.17 -2.60 6.27 -104.10 -0.65 -3.26 15 14 C -0.06 -0.81 9.82 -39.68 -0.39 -1.20 15 15 C -0.08 -0.99 6.33 -39.45 -0.25 -1.24 15 16 Cl -0.08 -0.89 28.97 -51.86 -1.50 -2.39 15 17 C -0.07 -0.93 9.81 -39.64 -0.39 -1.31 15 18 C -0.14 -1.99 10.06 -39.31 -0.40 -2.39 15 19 C 0.13 2.21 7.04 -38.96 -0.27 1.93 15 20 O -0.28 -5.78 10.74 -20.25 -0.22 -6.00 15 21 H 0.26 7.52 8.31 -40.82 -0.34 7.18 15 22 H 0.04 0.87 7.20 -51.93 -0.37 0.50 15 23 H 0.03 0.59 7.57 -51.93 -0.39 0.19 15 24 H 0.09 1.16 8.14 -51.93 -0.42 0.74 15 25 H 0.09 1.36 7.92 -51.93 -0.41 0.95 15 26 H 0.13 1.46 8.06 -52.49 -0.42 1.04 15 27 H 0.14 1.33 8.06 -52.48 -0.42 0.91 15 28 H 0.14 1.75 8.06 -52.49 -0.42 1.33 15 LS Contribution 259.61 15.07 3.91 3.91 Total: -1.00 -30.14 259.61 -7.73 -37.87 By element: Atomic # 1 Polarization: 0.60 SS G_CDS: -2.88 Total: -2.28 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: -3.15 Total: -20.91 kcal Atomic # 7 Polarization: -27.41 SS G_CDS: 0.77 Total: -26.63 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: -0.22 Total: -6.00 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.67 Total: 16.44 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.50 Total: -2.39 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.14 -7.73 -37.87 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261046369.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.955 kcal (2) G-P(sol) polarization free energy of solvation -30.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds