Wall clock time and date at job start Mon Mar 30 2020 05:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46997 * 180.02562 * 9 7 2 11 11 H 1.08998 * 110.66849 * 51.77794 * 10 9 7 12 12 C 1.54712 * 110.75057 * 174.99778 * 10 9 7 13 13 C 1.51646 * 101.90998 * 143.68411 * 12 10 9 14 14 C 1.37749 * 132.16761 * 164.30247 * 13 12 10 15 15 C 1.38444 * 119.96749 * 180.33208 * 14 13 12 16 16 Cl 1.73604 * 120.12595 * 179.97438 * 15 14 13 17 17 C 1.38386 * 119.74339 * 359.97438 * 15 14 13 18 18 C 1.37931 * 120.33514 * 359.84650 * 17 15 14 19 19 C 1.38876 * 107.03766 * 344.32425 * 13 12 10 20 20 O 1.36160 * 111.24769 * 359.35282 * 19 13 12 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 23 23 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 24 24 H 1.09000 * 110.93716 * 261.83746 * 12 10 9 25 25 H 1.08996 * 110.93704 * 25.49462 * 12 10 9 26 26 H 1.07992 * 120.01159 * 0.32188 * 14 13 12 27 27 H 1.08005 * 119.83457 * 179.87506 * 17 15 14 28 28 H 1.07994 * 119.87245 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 1 3.5552 -3.2087 -0.8034 12 6 5.5631 -2.6728 -0.1270 13 6 5.9217 -3.8504 0.7587 14 6 7.0706 -4.6007 0.8793 15 6 7.1217 -5.6466 1.7849 16 17 8.5673 -6.5953 1.9398 17 6 6.0159 -5.9328 2.5662 18 6 4.8662 -5.1798 2.4489 19 6 4.8079 -4.1247 1.5416 20 8 3.7913 -3.2594 1.2738 21 1 -0.4850 0.8401 0.0004 22 1 3.8752 -0.6797 -0.8895 23 1 3.8746 -0.6808 0.8905 24 1 5.8658 -2.8545 -1.1582 25 1 6.0064 -1.7514 0.2506 26 1 7.9310 -4.3732 0.2675 27 1 6.0534 -6.7497 3.2717 28 1 4.0076 -5.4100 3.0620 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261046369.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:26 Heat of formation + Delta-G solvation = -39.807883 kcal Electronic energy + Delta-G solvation = -14096.392404 eV Core-core repulsion = 11523.506650 eV Total energy + Delta-G solvation = -2572.885754 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.11298 -38.82445 -37.14961 -35.36179 -33.90566 -32.31515 -30.84796 -28.88335 -25.17001 -23.44486 -22.72871 -22.18746 -19.03219 -18.42327 -17.84456 -17.21199 -16.70764 -15.81282 -15.29070 -14.95483 -14.66874 -14.29539 -14.15501 -13.90381 -13.76067 -13.37015 -13.11746 -12.79047 -12.45949 -12.20366 -11.96511 -11.80468 -11.66484 -11.42785 -11.23504 -10.79281 -9.99878 -9.03951 -8.29748 -6.35065 0.12923 0.20691 1.13353 1.37116 1.39014 1.49983 2.33509 2.36480 2.57894 3.06235 3.42626 3.61663 3.84905 4.08552 4.12307 4.21646 4.43168 4.59865 4.75177 4.81113 4.87384 4.97862 5.12134 5.16085 5.29890 5.37170 5.50993 5.60439 6.18735 6.28824 6.71213 7.27800 8.87405 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.060670 B = 0.005082 C = 0.004837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.403987 B = 5507.800509 C = 5787.888068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.002 3.998 3 Si 0.954 3.046 4 H -0.272 1.272 5 H -0.234 1.234 6 H -0.283 1.283 7 C -0.530 4.530 8 H 0.026 0.974 9 C -0.008 4.008 10 C 0.093 3.907 11 H 0.074 0.926 12 C -0.098 4.098 13 C -0.171 4.171 14 C -0.058 4.058 15 C -0.075 4.075 16 Cl -0.060 7.060 17 C -0.068 4.068 18 C -0.143 4.143 19 C 0.086 3.914 20 O -0.319 6.319 21 H 0.267 0.733 22 H 0.060 0.940 23 H 0.026 0.974 24 H 0.118 0.882 25 H 0.101 0.899 26 H 0.156 0.844 27 H 0.166 0.834 28 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.397 -9.775 2.275 20.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.195 4.195 3 Si 0.776 3.224 4 H -0.197 1.197 5 H -0.157 1.157 6 H -0.209 1.209 7 C -0.568 4.568 8 H 0.045 0.955 9 C -0.045 4.045 10 C 0.038 3.962 11 H 0.092 0.908 12 C -0.135 4.135 13 C -0.172 4.172 14 C -0.077 4.077 15 C -0.102 4.102 16 Cl -0.031 7.031 17 C -0.086 4.086 18 C -0.162 4.162 19 C 0.040 3.960 20 O -0.234 6.234 21 H 0.076 0.924 22 H 0.078 0.922 23 H 0.044 0.956 24 H 0.136 0.864 25 H 0.119 0.881 26 H 0.174 0.826 27 H 0.183 0.817 28 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 18.176 -9.690 2.394 20.736 hybrid contribution -0.476 0.645 0.023 0.802 sum 17.700 -9.045 2.416 20.024 Atomic orbital electron populations 1.70080 1.08486 1.28249 1.52408 1.26074 0.95705 1.03721 0.93981 0.85615 0.79898 0.77769 0.79109 1.19696 1.15692 1.20888 1.21316 0.91713 0.93088 1.50709 0.95536 1.19709 0.94711 0.91687 0.98375 1.23456 0.94867 0.95245 0.82608 0.90791 1.21940 0.93644 0.96497 1.01403 1.20923 0.94444 0.99887 1.01988 1.20300 0.97216 0.92777 0.97401 1.20700 0.89932 0.97662 1.01878 1.98353 1.36222 1.71210 1.97318 1.20962 0.89822 0.99443 0.98422 1.20452 1.00418 0.94168 1.01133 1.20320 0.88051 0.91112 0.96566 1.87013 1.44547 1.53242 1.38549 0.92449 0.92198 0.95561 0.86412 0.88073 0.82631 0.81670 0.83911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.31 13.96 21.45 0.30 -60.01 15 2 C 0.00 0.11 5.47 84.66 0.46 0.57 15 3 Si 0.95 43.35 27.47 68.60 1.88 45.24 15 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 15 5 H -0.23 -9.37 6.54 99.48 0.65 -8.72 15 6 H -0.28 -12.64 7.11 99.48 0.71 -11.93 15 7 C -0.53 -30.87 9.60 25.60 0.25 -30.63 15 8 H 0.03 1.74 7.99 -2.91 -0.02 1.71 15 9 C -0.01 -0.35 3.73 29.85 0.11 -0.24 15 10 C 0.09 3.70 3.51 31.18 0.11 3.81 15 11 H 0.07 2.98 8.14 -2.39 -0.02 2.96 15 12 C -0.10 -2.83 6.65 30.73 0.20 -2.63 15 13 C -0.17 -4.97 6.27 -19.53 -0.12 -5.09 15 14 C -0.06 -1.37 9.82 22.20 0.22 -1.15 15 15 C -0.07 -1.67 6.33 22.35 0.14 -1.53 15 16 Cl -0.06 -1.12 28.97 -2.72 -0.08 -1.20 15 17 C -0.07 -1.51 9.81 22.23 0.22 -1.30 15 18 C -0.14 -3.99 10.06 22.45 0.23 -3.76 15 19 C 0.09 2.94 7.04 22.67 0.16 3.10 15 20 O -0.32 -13.76 10.74 -95.37 -1.02 -14.78 15 21 H 0.27 15.69 8.31 -92.71 -0.77 14.92 15 22 H 0.06 2.49 7.20 -2.38 -0.02 2.47 15 23 H 0.03 1.19 7.57 -2.39 -0.02 1.17 15 24 H 0.12 2.68 8.14 -2.39 -0.02 2.66 15 25 H 0.10 2.72 7.92 -2.39 -0.02 2.70 15 26 H 0.16 2.82 8.06 -2.91 -0.02 2.80 15 27 H 0.17 2.65 8.06 -2.91 -0.02 2.63 15 28 H 0.14 3.65 8.06 -2.91 -0.02 3.63 15 Total: -1.00 -68.17 259.61 4.16 -64.01 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: 1.11 Total: 5.60 kcal Atomic # 6 Polarization: -40.82 SS G_CDS: 1.97 Total: -38.85 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: 0.30 Total: -60.01 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -1.02 Total: -14.78 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.88 Total: 45.24 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -0.08 Total: -1.20 kcal Total: -68.17 4.16 -64.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261046369.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.198 kcal (2) G-P(sol) polarization free energy of solvation -68.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds