Wall clock time and date at job start Mon Mar 30 2020 05:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00527 * 2 1 4 4 H 1.48502 * 109.47121 * 270.00219 * 3 2 1 5 5 H 1.48497 * 109.47276 * 29.99949 * 3 2 1 6 6 H 1.48501 * 109.47392 * 150.00134 * 3 2 1 7 7 C 1.37883 * 119.99231 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00092 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99563 * 179.97438 * 7 2 1 10 10 C 1.52992 * 109.47010 * 180.02562 * 9 7 2 11 11 H 1.09006 * 110.67101 * 303.23625 * 10 9 7 12 12 C 1.54702 * 110.75421 * 179.81450 * 10 9 7 13 13 C 1.51647 * 101.94917 * 216.45622 * 12 10 9 14 14 C 1.37745 * 132.15058 * 195.59193 * 13 12 10 15 15 C 1.38447 * 119.96778 * 179.12795 * 14 13 12 16 16 Cl 1.73596 * 120.13018 * 179.97438 * 15 14 13 17 17 C 1.38389 * 119.74004 * 359.97438 * 15 14 13 18 18 C 1.37926 * 120.33630 * 0.18981 * 17 15 14 19 19 C 1.38874 * 107.05153 * 15.13464 * 13 12 10 20 20 O 1.36163 * 111.21530 * 1.43490 * 19 13 12 21 21 H 0.97008 * 119.99404 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.47424 * 59.99963 * 9 7 2 23 23 H 1.09002 * 109.47154 * 300.00075 * 9 7 2 24 24 H 1.09006 * 110.93646 * 98.29027 * 12 10 9 25 25 H 1.09005 * 110.93139 * 334.61703 * 12 10 9 26 26 H 1.08003 * 120.01038 * 359.14774 * 14 13 12 27 27 H 1.07997 * 119.83138 * 180.16569 * 17 15 14 28 28 H 1.07996 * 119.87138 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4469 2.6526 0.7000 6 1 3.5469 1.4400 0.7000 7 6 2.0044 -1.1942 -0.0005 8 1 1.4643 -2.1294 -0.0005 9 6 3.5115 -1.1943 -0.0011 10 6 4.0213 -2.6367 -0.0023 11 1 3.6228 -3.1864 0.8506 12 6 5.5679 -2.6715 -0.0076 13 6 5.8520 -3.8719 -0.8897 14 6 6.9884 -4.6244 -1.0888 15 6 6.9614 -5.7007 -1.9592 16 17 8.3913 -6.6516 -2.2139 17 6 5.7900 -6.0157 -2.6253 18 6 4.6524 -5.2608 -2.4291 19 6 4.6730 -4.1737 -1.5587 20 8 3.6842 -3.2953 -1.2353 21 1 -0.4850 0.8402 -0.0004 22 1 3.8752 -0.6807 0.8888 23 1 3.8745 -0.6803 -0.8911 24 1 5.9575 -2.8266 0.9986 25 1 5.9764 -1.7608 -0.4458 26 1 7.9000 -4.3750 -0.5660 27 1 5.7665 -6.8566 -3.3025 28 1 3.7424 -5.5130 -2.9532 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261046370.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:29 Heat of formation + Delta-G solvation = -39.629984 kcal Electronic energy + Delta-G solvation = -14105.879482 eV Core-core repulsion = 11533.001441 eV Total energy + Delta-G solvation = -2572.878040 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.10825 -38.82203 -37.14909 -35.35000 -33.90208 -32.31245 -30.84409 -28.87952 -25.17153 -23.44545 -22.72163 -22.17856 -18.99852 -18.43288 -17.84700 -17.21234 -16.70330 -15.81106 -15.29512 -14.95823 -14.67025 -14.29930 -14.14922 -13.88348 -13.73275 -13.39491 -13.11250 -12.79279 -12.44570 -12.20263 -11.95732 -11.80663 -11.66777 -11.41680 -11.22980 -10.78827 -9.99715 -9.03710 -8.29247 -6.34409 0.13088 0.20836 1.13423 1.37197 1.39151 1.50100 2.34321 2.37315 2.57991 3.06675 3.42973 3.61894 3.85187 4.08582 4.12633 4.21641 4.43155 4.59788 4.75259 4.81775 4.87836 4.97896 5.11547 5.16165 5.31019 5.37470 5.50554 5.61049 6.19108 6.29976 6.72258 7.28305 8.87974 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.060159 B = 0.005115 C = 0.004853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.317778 B = 5472.942992 C = 5768.793298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.001 3.999 3 Si 0.954 3.046 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.234 1.234 7 C -0.529 4.529 8 H 0.026 0.974 9 C -0.008 4.008 10 C 0.093 3.907 11 H 0.075 0.925 12 C -0.098 4.098 13 C -0.171 4.171 14 C -0.058 4.058 15 C -0.075 4.075 16 Cl -0.060 7.060 17 C -0.068 4.068 18 C -0.143 4.143 19 C 0.085 3.915 20 O -0.318 6.318 21 H 0.266 0.734 22 H 0.060 0.940 23 H 0.026 0.974 24 H 0.118 0.882 25 H 0.101 0.899 26 H 0.156 0.844 27 H 0.166 0.834 28 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.180 -9.865 -2.644 20.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.195 4.195 3 Si 0.776 3.224 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.157 1.157 7 C -0.567 4.567 8 H 0.044 0.956 9 C -0.045 4.045 10 C 0.038 3.962 11 H 0.093 0.907 12 C -0.135 4.135 13 C -0.172 4.172 14 C -0.077 4.077 15 C -0.102 4.102 16 Cl -0.031 7.031 17 C -0.087 4.087 18 C -0.162 4.162 19 C 0.039 3.961 20 O -0.233 6.233 21 H 0.075 0.925 22 H 0.078 0.922 23 H 0.044 0.956 24 H 0.137 0.863 25 H 0.119 0.881 26 H 0.174 0.826 27 H 0.183 0.817 28 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 17.949 -9.783 -2.757 20.627 hybrid contribution -0.476 0.647 -0.023 0.804 sum 17.473 -9.135 -2.780 19.912 Atomic orbital electron populations 1.70086 1.08499 1.28218 1.52483 1.26080 0.95708 1.03725 0.94025 0.85610 0.79897 0.77755 0.79104 1.19687 1.20930 1.15669 1.21293 0.91719 0.93070 1.50589 0.95555 1.19718 0.94751 0.91674 0.98379 1.23456 0.93956 0.94750 0.84063 0.90693 1.21938 0.94028 0.96167 1.01321 1.20929 0.93783 0.99602 1.02898 1.20303 0.97848 0.92593 0.96952 1.20698 0.89465 0.97215 1.02792 1.98352 1.37653 1.71134 1.95955 1.20956 0.89467 0.99626 0.98612 1.20451 1.00591 0.93714 1.01456 1.20326 0.88288 0.91035 0.96451 1.87043 1.43578 1.51330 1.41314 0.92476 0.92219 0.95554 0.86331 0.88119 0.82606 0.81697 0.83987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.45 13.96 21.45 0.30 -60.16 15 2 C 0.00 0.06 5.47 84.66 0.46 0.53 15 3 Si 0.95 43.36 27.47 68.60 1.88 45.25 15 4 H -0.27 -12.08 7.11 99.48 0.71 -11.38 15 5 H -0.28 -12.67 7.11 99.48 0.71 -11.97 15 6 H -0.23 -9.36 6.54 99.48 0.65 -8.70 15 7 C -0.53 -30.82 9.51 25.60 0.24 -30.57 15 8 H 0.03 1.73 7.99 -2.91 -0.02 1.71 15 9 C -0.01 -0.37 3.75 29.85 0.11 -0.26 15 10 C 0.09 3.67 3.55 31.17 0.11 3.78 15 11 H 0.08 2.98 8.14 -2.38 -0.02 2.96 15 12 C -0.10 -2.81 6.65 30.73 0.20 -2.61 15 13 C -0.17 -4.97 6.27 -19.53 -0.12 -5.10 15 14 C -0.06 -1.37 9.82 22.20 0.22 -1.15 15 15 C -0.07 -1.68 6.33 22.36 0.14 -1.54 15 16 Cl -0.06 -1.13 28.97 -2.72 -0.08 -1.20 15 17 C -0.07 -1.53 9.81 22.23 0.22 -1.31 15 18 C -0.14 -4.04 10.06 22.45 0.23 -3.82 15 19 C 0.09 2.94 7.03 22.67 0.16 3.10 15 20 O -0.32 -13.83 10.64 -95.40 -1.02 -14.84 15 21 H 0.27 15.71 8.31 -92.70 -0.77 14.94 15 22 H 0.06 2.47 7.20 -2.39 -0.02 2.46 15 23 H 0.03 1.18 7.57 -2.39 -0.02 1.17 15 24 H 0.12 2.67 8.14 -2.38 -0.02 2.65 15 25 H 0.10 2.71 7.92 -2.38 -0.02 2.70 15 26 H 0.16 2.82 8.06 -2.91 -0.02 2.80 15 27 H 0.17 2.69 8.06 -2.91 -0.02 2.66 15 28 H 0.14 3.69 8.06 -2.91 -0.02 3.67 15 Total: -1.00 -68.43 259.48 4.17 -64.26 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: 1.11 Total: 5.65 kcal Atomic # 6 Polarization: -40.93 SS G_CDS: 1.97 Total: -38.95 kcal Atomic # 7 Polarization: -60.45 SS G_CDS: 0.30 Total: -60.16 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -1.02 Total: -14.84 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.88 Total: 45.25 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.08 Total: -1.20 kcal Total: -68.43 4.17 -64.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261046370.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.626 kcal (2) G-P(sol) polarization free energy of solvation -68.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds