Wall clock time and date at job start Mon Mar 30 2020 05:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86802 * 120.00463 * 2 1 4 4 H 1.48510 * 109.46881 * 264.79963 * 3 2 1 5 5 H 1.48493 * 109.47140 * 24.79471 * 3 2 1 6 6 H 1.48500 * 109.47382 * 144.80187 * 3 2 1 7 7 C 1.37876 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99537 * 6.18347 * 7 2 1 9 9 C 1.50707 * 120.00514 * 186.17849 * 7 2 1 10 10 H 1.08997 * 109.43638 * 34.21353 * 9 7 2 11 11 C 1.53076 * 109.40101 * 274.31684 * 9 7 2 12 12 C 1.53403 * 108.29369 * 191.70017 * 11 9 7 13 13 O 1.42827 * 108.39007 * 64.69832 * 12 11 9 14 14 C 1.35850 * 117.86835 * 310.83190 * 13 12 11 15 15 C 1.39121 * 118.49601 * 196.96136 * 14 13 12 16 16 C 1.38075 * 120.20877 * 180.45885 * 15 14 13 17 17 Cl 1.73597 * 120.03629 * 180.02562 * 16 15 14 18 18 C 1.38413 * 119.93358 * 0.28285 * 16 15 14 19 19 C 1.38091 * 119.96196 * 359.37561 * 18 16 15 20 20 C 1.38388 * 121.79903 * 17.28426 * 14 13 12 21 21 H 0.97007 * 119.99676 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.70177 * 311.40659 * 11 9 7 23 23 H 1.09007 * 109.69560 * 71.96371 * 11 9 7 24 24 H 1.09003 * 109.68154 * 184.41620 * 12 11 9 25 25 H 1.08995 * 109.68272 * 304.93602 * 12 11 9 26 26 H 1.08005 * 119.89332 * 0.47518 * 15 14 13 27 27 H 1.07995 * 120.02221 * 179.62947 * 18 16 15 28 28 H 1.08005 * 119.83055 * 180.25915 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6066 1.9829 -1.3944 5 1 1.3961 2.6819 0.5871 6 1 3.4875 1.4743 0.8070 7 6 2.0044 -1.1940 0.0005 8 1 1.4690 -2.1267 -0.0998 9 6 3.5049 -1.1979 0.1410 10 1 3.8101 -0.3809 0.7948 11 6 4.1451 -1.0139 -1.2372 12 6 5.6447 -1.3132 -1.1154 13 8 5.8029 -2.6905 -0.7721 14 6 5.0648 -3.1766 0.2596 15 6 5.4474 -4.3820 0.8394 16 6 4.7171 -4.9133 1.8838 17 17 5.1990 -6.4173 2.6044 18 6 3.5973 -4.2481 2.3522 19 6 3.2196 -3.0480 1.7830 20 6 3.9497 -2.5098 0.7362 21 1 -0.4850 0.8401 -0.0004 22 1 3.6896 -1.7024 -1.9489 23 1 4.0010 0.0124 -1.5752 24 1 6.1375 -1.1132 -2.0669 25 1 6.0819 -0.6878 -0.3371 26 1 6.3186 -4.9037 0.4715 27 1 3.0216 -4.6653 3.1651 28 1 2.3479 -2.5287 2.1530 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261068440.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:44 Heat of formation + Delta-G solvation = -46.929973 kcal Electronic energy + Delta-G solvation = -14662.944162 eV Core-core repulsion = 12089.749570 eV Total energy + Delta-G solvation = -2573.194591 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.59186 -38.67543 -37.26413 -36.23843 -33.85827 -31.42918 -31.14649 -28.49547 -25.01419 -24.38631 -23.15918 -20.76239 -19.10158 -18.80345 -17.69326 -16.91838 -16.41243 -16.05992 -15.38479 -15.02070 -14.76364 -14.59895 -14.42710 -13.93483 -13.53173 -13.15429 -12.84909 -12.64461 -12.51131 -12.02006 -11.92359 -11.73110 -11.58697 -11.32244 -11.10177 -10.66854 -9.62325 -9.07427 -8.30003 -6.34756 0.22791 0.40681 1.06964 1.34318 1.36536 1.45474 2.32904 2.44632 2.70957 3.02358 3.87627 3.99974 4.05172 4.13409 4.20124 4.30530 4.45777 4.57128 4.73341 4.89539 4.93742 5.02882 5.20770 5.35080 5.38370 5.57796 5.68509 5.79205 6.29214 6.44609 6.70963 7.29151 8.86042 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.033532 B = 0.007918 C = 0.006722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.821158 B = 3535.187132 C = 4164.229916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.018 3.982 3 Si 0.933 3.067 4 H -0.258 1.258 5 H -0.292 1.292 6 H -0.241 1.241 7 C -0.504 4.504 8 H 0.032 0.968 9 C 0.040 3.960 10 H 0.053 0.947 11 C -0.155 4.155 12 C 0.059 3.941 13 O -0.322 6.322 14 C 0.122 3.878 15 C -0.149 4.149 16 C -0.014 4.014 17 Cl -0.058 7.058 18 C -0.146 4.146 19 C -0.070 4.070 20 C -0.135 4.135 21 H 0.267 0.733 22 H 0.058 0.942 23 H 0.074 0.926 24 H 0.136 0.864 25 H 0.071 0.929 26 H 0.153 0.847 27 H 0.148 0.852 28 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.801 -4.885 2.225 13.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.183 1.183 5 H -0.218 1.218 6 H -0.164 1.164 7 C -0.542 4.542 8 H 0.051 0.949 9 C 0.021 3.979 10 H 0.071 0.929 11 C -0.193 4.193 12 C -0.015 4.015 13 O -0.236 6.236 14 C 0.077 3.923 15 C -0.168 4.168 16 C -0.041 4.041 17 Cl -0.029 7.029 18 C -0.165 4.165 19 C -0.088 4.088 20 C -0.136 4.136 21 H 0.076 0.924 22 H 0.077 0.923 23 H 0.093 0.907 24 H 0.154 0.846 25 H 0.089 0.911 26 H 0.170 0.830 27 H 0.166 0.834 28 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 12.826 -5.007 2.164 13.938 hybrid contribution -0.663 0.845 -0.001 1.074 sum 12.163 -4.162 2.163 13.036 Atomic orbital electron populations 1.70046 1.08257 1.28157 1.52002 1.25850 0.95351 1.02778 0.93981 0.85991 0.79627 0.78751 0.79945 1.18263 1.21814 1.16428 1.20959 0.90229 0.93125 1.49857 0.94938 1.18280 0.94774 0.91520 0.93324 0.92916 1.22490 0.95288 1.02268 0.99260 1.23280 0.96359 0.78992 1.02889 1.85878 1.61782 1.28840 1.47115 1.18652 0.90672 0.93941 0.89071 1.20409 1.02821 0.96066 0.97515 1.20450 0.96987 0.89642 0.96973 1.98337 1.91411 1.30778 1.82416 1.21091 0.97138 0.95611 1.02660 1.21047 0.98400 0.94765 0.94589 1.20413 0.94840 0.99775 0.98572 0.92438 0.92305 0.90744 0.84608 0.91053 0.82980 0.83439 0.85787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.79 13.96 21.45 0.30 -56.49 15 2 C 0.02 1.00 5.47 84.66 0.46 1.47 15 3 Si 0.93 40.93 25.90 68.60 1.78 42.71 15 4 H -0.26 -10.63 7.11 99.48 0.71 -9.92 15 5 H -0.29 -12.94 7.11 99.48 0.71 -12.24 15 6 H -0.24 -9.61 6.13 99.48 0.61 -9.00 15 7 C -0.50 -27.23 7.65 25.60 0.20 -27.04 15 8 H 0.03 2.00 7.90 -2.91 -0.02 1.97 15 9 C 0.04 1.75 1.87 -12.23 -0.02 1.73 15 10 H 0.05 2.33 5.72 -2.39 -0.01 2.31 15 11 C -0.16 -5.88 5.26 30.75 0.16 -5.71 15 12 C 0.06 1.75 7.03 72.12 0.51 2.26 15 13 O -0.32 -10.91 10.27 -91.87 -0.94 -11.85 15 14 C 0.12 4.47 6.47 22.52 0.15 4.62 15 15 C -0.15 -4.76 9.72 22.44 0.22 -4.54 15 16 C -0.01 -0.43 6.31 22.27 0.14 -0.29 15 17 Cl -0.06 -1.48 28.96 -2.72 -0.08 -1.56 15 18 C -0.15 -4.83 9.83 22.28 0.22 -4.61 15 19 C -0.07 -2.76 9.00 22.30 0.20 -2.56 15 20 C -0.13 -5.55 5.42 -19.74 -0.11 -5.66 15 21 H 0.27 15.04 8.31 -92.70 -0.77 14.27 15 22 H 0.06 2.40 8.10 -2.39 -0.02 2.38 15 23 H 0.07 2.69 6.39 -2.38 -0.02 2.68 15 24 H 0.14 3.01 8.14 -2.39 -0.02 2.99 15 25 H 0.07 1.94 8.14 -2.39 -0.02 1.92 15 26 H 0.15 4.14 8.06 -2.91 -0.02 4.12 15 27 H 0.15 4.14 8.06 -2.91 -0.02 4.12 15 28 H 0.12 5.32 7.36 -2.91 -0.02 5.30 15 Total: -1.00 -60.88 249.62 4.25 -56.63 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: 1.07 Total: 10.90 kcal Atomic # 6 Polarization: -42.46 SS G_CDS: 2.12 Total: -40.34 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: 0.30 Total: -56.49 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: -0.94 Total: -11.85 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 1.78 Total: 42.71 kcal Atomic # 17 Polarization: -1.48 SS G_CDS: -0.08 Total: -1.56 kcal Total: -60.88 4.25 -56.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261068440.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.705 kcal (2) G-P(sol) polarization free energy of solvation -60.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds