Wall clock time and date at job start Mon Mar 30 2020 05:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 119.99550 * 2 1 4 4 H 1.48501 * 109.47018 * 264.87327 * 3 2 1 5 5 H 1.48500 * 109.47464 * 24.87384 * 3 2 1 6 6 H 1.48497 * 109.47075 * 144.87676 * 3 2 1 7 7 C 1.37873 * 120.00252 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99904 * 2.20952 * 7 2 1 9 9 C 1.50694 * 120.00187 * 182.20972 * 7 2 1 10 10 H 1.09002 * 109.43259 * 335.17754 * 9 7 2 11 11 C 1.53068 * 109.43668 * 95.09082 * 9 7 2 12 12 C 1.53413 * 108.29917 * 168.23070 * 11 9 7 13 13 O 1.42828 * 108.35816 * 295.24155 * 12 11 9 14 14 C 1.35847 * 117.84838 * 49.20774 * 13 12 11 15 15 C 1.39133 * 118.47760 * 162.89749 * 14 13 12 16 16 C 1.38080 * 120.20413 * 179.80756 * 15 14 13 17 17 Cl 1.73603 * 120.03423 * 180.02562 * 16 15 14 18 18 C 1.38406 * 119.92791 * 359.97438 * 16 15 14 19 19 C 1.38080 * 119.97278 * 0.08777 * 18 16 15 20 20 C 1.38379 * 121.81281 * 342.85376 * 14 13 12 21 21 H 0.97000 * 119.99999 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.69955 * 48.52736 * 11 9 7 23 23 H 1.09002 * 109.72963 * 287.94835 * 11 9 7 24 24 H 1.08999 * 109.68197 * 175.52730 * 12 11 9 25 25 H 1.08998 * 109.71879 * 54.97920 * 12 11 9 26 26 H 1.08005 * 119.89639 * 359.78968 * 15 14 13 27 27 H 1.08009 * 120.01365 * 180.02562 * 18 16 15 28 28 H 1.08003 * 119.83080 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6049 1.9840 -1.3945 5 1 1.3966 2.6816 0.5889 6 1 3.4883 1.4740 0.8055 7 6 2.0046 -1.1940 0.0005 8 1 1.4652 -2.1290 -0.0351 9 6 3.5107 -1.1944 0.0509 10 1 3.8873 -0.2536 -0.3507 11 6 3.9718 -1.3497 1.5021 12 6 5.4776 -1.6434 1.5003 13 8 5.6888 -2.9066 0.8682 14 6 5.0898 -3.1238 -0.3316 15 6 5.5541 -4.1679 -1.1255 16 6 4.9687 -4.4230 -2.3497 17 17 5.5510 -5.7273 -3.3364 18 6 3.9164 -3.6384 -2.7889 19 6 3.4548 -2.6009 -2.0033 20 6 4.0400 -2.3392 -0.7755 21 1 -0.4850 0.8400 -0.0004 22 1 3.4370 -2.1755 1.9712 23 1 3.7780 -0.4278 2.0505 24 1 5.8458 -1.6797 2.5256 25 1 6.0036 -0.8642 0.9487 26 1 6.3751 -4.7805 -0.7832 27 1 3.4572 -3.8370 -3.7461 28 1 2.6339 -1.9898 -2.3485 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261068442.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:47 Heat of formation + Delta-G solvation = -32.817312 kcal Electronic energy + Delta-G solvation = -14661.522848 eV Core-core repulsion = 12088.940227 eV Total energy + Delta-G solvation = -2572.582621 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.13910 -37.31191 -35.95228 -34.52788 -31.93321 -30.00311 -29.69200 -26.74196 -23.49698 -22.78498 -21.60176 -19.20614 -17.40969 -17.12565 -16.24329 -15.49172 -14.67744 -14.57772 -13.81811 -13.57709 -13.17138 -13.08601 -12.67939 -12.49371 -12.02742 -11.59843 -11.27060 -11.06014 -10.72863 -10.66048 -10.46927 -10.18089 -10.01700 -9.58388 -9.32077 -8.74057 -8.17894 -7.62245 -6.23288 -4.24943 1.66929 1.84160 2.37722 3.15718 3.23849 3.26079 3.80741 4.16964 4.25902 5.00406 5.31072 5.43800 5.51778 5.55547 5.60722 5.74618 5.77204 5.99979 6.27008 6.33357 6.47935 6.55984 6.68989 6.89817 6.97941 7.16790 7.29561 7.53743 7.88164 8.35031 8.82077 9.36649 10.89071 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.031199 B = 0.008083 C = 0.006884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.236011 B = 3463.064502 C = 4066.479955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.075 3.925 3 Si 0.873 3.127 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.509 4.509 8 H 0.078 0.922 9 C 0.048 3.952 10 H 0.048 0.952 11 C -0.153 4.153 12 C 0.056 3.944 13 O -0.320 6.320 14 C 0.128 3.872 15 C -0.153 4.153 16 C -0.018 4.018 17 Cl -0.087 7.087 18 C -0.152 4.152 19 C -0.052 4.052 20 C -0.110 4.110 21 H 0.266 0.734 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.097 0.903 25 H 0.055 0.945 26 H 0.130 0.870 27 H 0.126 0.874 28 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.247 -4.195 -2.125 11.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.127 4.127 3 Si 0.700 3.300 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.546 4.546 8 H 0.096 0.904 9 C 0.029 3.971 10 H 0.066 0.934 11 C -0.191 4.191 12 C -0.019 4.019 13 O -0.235 6.235 14 C 0.083 3.917 15 C -0.173 4.173 16 C -0.044 4.044 17 Cl -0.058 7.058 18 C -0.171 4.171 19 C -0.070 4.070 20 C -0.112 4.112 21 H 0.077 0.923 22 H 0.092 0.908 23 H 0.091 0.909 24 H 0.115 0.885 25 H 0.074 0.926 26 H 0.148 0.852 27 H 0.144 0.856 28 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 10.234 -4.309 -2.096 11.300 hybrid contribution 0.233 0.977 -0.041 1.005 sum 10.467 -3.332 -2.138 11.190 Atomic orbital electron populations 1.69881 1.06238 1.27232 1.49572 1.25052 0.94722 0.98807 0.94168 0.86931 0.80202 0.83850 0.79018 1.19913 1.21288 1.18993 1.20804 0.87367 0.94835 1.51627 0.90366 1.18221 0.97539 0.91595 0.89718 0.93427 1.22579 0.92720 1.02810 1.00974 1.23117 0.98593 0.83248 0.96945 1.85876 1.69266 1.36966 1.31375 1.18565 0.92286 0.95266 0.85588 1.20154 1.03186 1.00680 0.93242 1.20359 0.98427 0.92724 0.92897 1.98323 1.88480 1.48932 1.70089 1.20937 0.97520 0.97209 1.01388 1.21127 0.98009 0.95387 0.92515 1.20589 0.94094 0.99666 0.96808 0.92350 0.90765 0.90914 0.88512 0.92636 0.85222 0.85556 0.83762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.67 13.96 55.43 0.77 -24.90 15 2 C 0.08 2.01 5.47 -17.82 -0.10 1.92 15 3 Si 0.87 19.92 26.81 -169.99 -4.56 15.36 15 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 15 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 15 6 H -0.27 -5.68 6.51 56.52 0.37 -5.31 15 7 C -0.51 -13.19 7.56 -34.44 -0.26 -13.45 15 8 H 0.08 2.26 8.06 -52.48 -0.42 1.84 15 9 C 0.05 1.06 1.91 -92.85 -0.18 0.88 15 10 H 0.05 1.06 5.40 -51.93 -0.28 0.78 15 11 C -0.15 -2.99 5.48 -26.48 -0.15 -3.14 15 12 C 0.06 0.92 7.03 37.37 0.26 1.18 15 13 O -0.32 -5.87 10.27 -19.26 -0.20 -6.07 15 14 C 0.13 2.46 6.47 -39.20 -0.25 2.20 15 15 C -0.15 -2.65 9.72 -39.31 -0.38 -3.03 15 16 C -0.02 -0.29 6.31 -39.58 -0.25 -0.54 15 17 Cl -0.09 -1.24 28.96 -51.86 -1.50 -2.74 15 18 C -0.15 -2.59 9.83 -39.58 -0.39 -2.98 15 19 C -0.05 -1.02 9.09 -39.54 -0.36 -1.38 15 20 C -0.11 -2.28 5.43 -104.43 -0.57 -2.84 15 21 H 0.27 7.21 8.31 -40.82 -0.34 6.87 15 22 H 0.07 1.52 8.10 -51.93 -0.42 1.10 15 23 H 0.07 1.39 7.62 -51.93 -0.40 0.99 15 24 H 0.10 1.29 8.14 -51.93 -0.42 0.87 15 25 H 0.06 0.87 8.14 -51.93 -0.42 0.44 15 26 H 0.13 2.00 8.06 -52.48 -0.42 1.58 15 27 H 0.13 1.87 8.06 -52.48 -0.42 1.45 15 28 H 0.14 2.92 7.36 -52.48 -0.39 2.53 15 LS Contribution 252.28 15.07 3.80 3.80 Total: -1.00 -27.48 252.28 -7.07 -34.54 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -2.77 Total: 1.18 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: -2.62 Total: -21.18 kcal Atomic # 7 Polarization: -25.67 SS G_CDS: 0.77 Total: -24.90 kcal Atomic # 8 Polarization: -5.87 SS G_CDS: -0.20 Total: -6.07 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.56 Total: 15.36 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -1.50 Total: -2.74 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -27.48 -7.07 -34.54 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261068442.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.724 kcal (2) G-P(sol) polarization free energy of solvation -27.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds