Wall clock time and date at job start Mon Mar 30 2020 05:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 119.99550 * 2 1 4 4 H 1.48501 * 109.47018 * 264.87327 * 3 2 1 5 5 H 1.48500 * 109.47464 * 24.87384 * 3 2 1 6 6 H 1.48497 * 109.47075 * 144.87676 * 3 2 1 7 7 C 1.37873 * 120.00252 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99904 * 2.20952 * 7 2 1 9 9 C 1.50694 * 120.00187 * 182.20972 * 7 2 1 10 10 H 1.09002 * 109.43259 * 335.17754 * 9 7 2 11 11 C 1.53068 * 109.43668 * 95.09082 * 9 7 2 12 12 C 1.53413 * 108.29917 * 168.23070 * 11 9 7 13 13 O 1.42828 * 108.35816 * 295.24155 * 12 11 9 14 14 C 1.35847 * 117.84838 * 49.20774 * 13 12 11 15 15 C 1.39133 * 118.47760 * 162.89749 * 14 13 12 16 16 C 1.38080 * 120.20413 * 179.80756 * 15 14 13 17 17 Cl 1.73603 * 120.03423 * 180.02562 * 16 15 14 18 18 C 1.38406 * 119.92791 * 359.97438 * 16 15 14 19 19 C 1.38080 * 119.97278 * 0.08777 * 18 16 15 20 20 C 1.38379 * 121.81281 * 342.85376 * 14 13 12 21 21 H 0.97000 * 119.99999 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.69955 * 48.52736 * 11 9 7 23 23 H 1.09002 * 109.72963 * 287.94835 * 11 9 7 24 24 H 1.08999 * 109.68197 * 175.52730 * 12 11 9 25 25 H 1.08998 * 109.71879 * 54.97920 * 12 11 9 26 26 H 1.08005 * 119.89639 * 359.78968 * 15 14 13 27 27 H 1.08009 * 120.01365 * 180.02562 * 18 16 15 28 28 H 1.08003 * 119.83080 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6049 1.9840 -1.3945 5 1 1.3966 2.6816 0.5889 6 1 3.4883 1.4740 0.8055 7 6 2.0046 -1.1940 0.0005 8 1 1.4652 -2.1290 -0.0351 9 6 3.5107 -1.1944 0.0509 10 1 3.8873 -0.2536 -0.3507 11 6 3.9718 -1.3497 1.5021 12 6 5.4776 -1.6434 1.5003 13 8 5.6888 -2.9066 0.8682 14 6 5.0898 -3.1238 -0.3316 15 6 5.5541 -4.1679 -1.1255 16 6 4.9687 -4.4230 -2.3497 17 17 5.5510 -5.7273 -3.3364 18 6 3.9164 -3.6384 -2.7889 19 6 3.4548 -2.6009 -2.0033 20 6 4.0400 -2.3392 -0.7755 21 1 -0.4850 0.8400 -0.0004 22 1 3.4370 -2.1755 1.9712 23 1 3.7780 -0.4278 2.0505 24 1 5.8458 -1.6797 2.5256 25 1 6.0036 -0.8642 0.9487 26 1 6.3751 -4.7805 -0.7832 27 1 3.4572 -3.8370 -3.7461 28 1 2.6339 -1.9898 -2.3485 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261068442.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:47 Heat of formation + Delta-G solvation = -48.272640 kcal Electronic energy + Delta-G solvation = -14662.193041 eV Core-core repulsion = 12088.940227 eV Total energy + Delta-G solvation = -2573.252814 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.58562 -38.67082 -37.26278 -36.21885 -33.86013 -31.42498 -31.12925 -28.50785 -25.03122 -24.34056 -23.15819 -20.73528 -19.14824 -18.77694 -17.68231 -16.92196 -16.41765 -16.04249 -15.38785 -15.00805 -14.79169 -14.51681 -14.43007 -13.95155 -13.48879 -13.14765 -12.79669 -12.70094 -12.47638 -11.98657 -11.92242 -11.77219 -11.58672 -11.31711 -11.07028 -10.74507 -9.62071 -9.07429 -8.29946 -6.35470 0.22897 0.40978 1.07086 1.35584 1.36800 1.46672 2.33020 2.45096 2.71478 3.03405 3.88084 4.01386 4.07780 4.14060 4.21031 4.30880 4.46122 4.58078 4.71024 4.90432 4.94276 5.05446 5.21257 5.33478 5.38416 5.58968 5.69086 5.79828 6.28896 6.45087 6.70742 7.29106 8.86312 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.031199 B = 0.008083 C = 0.006884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.236011 B = 3463.064502 C = 4066.479955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.019 3.981 3 Si 0.936 3.064 4 H -0.268 1.268 5 H -0.289 1.289 6 H -0.237 1.237 7 C -0.502 4.502 8 H 0.030 0.970 9 C 0.045 3.955 10 H 0.050 0.950 11 C -0.152 4.152 12 C 0.059 3.941 13 O -0.323 6.323 14 C 0.122 3.878 15 C -0.149 4.149 16 C -0.014 4.014 17 Cl -0.059 7.059 18 C -0.147 4.147 19 C -0.069 4.069 20 C -0.138 4.138 21 H 0.267 0.733 22 H 0.055 0.945 23 H 0.078 0.922 24 H 0.135 0.865 25 H 0.070 0.930 26 H 0.152 0.848 27 H 0.148 0.852 28 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.042 -4.338 -2.163 13.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.179 4.179 3 Si 0.759 3.241 4 H -0.193 1.193 5 H -0.215 1.215 6 H -0.160 1.160 7 C -0.540 4.540 8 H 0.049 0.951 9 C 0.027 3.973 10 H 0.067 0.933 11 C -0.190 4.190 12 C -0.015 4.015 13 O -0.237 6.237 14 C 0.077 3.923 15 C -0.169 4.169 16 C -0.040 4.040 17 Cl -0.030 7.030 18 C -0.166 4.166 19 C -0.087 4.087 20 C -0.139 4.139 21 H 0.076 0.924 22 H 0.074 0.926 23 H 0.097 0.903 24 H 0.153 0.847 25 H 0.089 0.911 26 H 0.170 0.830 27 H 0.166 0.834 28 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 13.059 -4.470 -2.132 13.967 hybrid contribution -0.650 0.847 -0.097 1.073 sum 12.409 -3.623 -2.229 13.117 Atomic orbital electron populations 1.70039 1.08272 1.28182 1.52007 1.25881 0.95373 1.02700 0.93953 0.85912 0.79750 0.78762 0.79651 1.19288 1.21526 1.16020 1.20904 0.89774 0.92906 1.50433 0.95149 1.18168 0.94648 0.92627 0.91867 0.93264 1.22446 0.95342 1.02486 0.98730 1.23287 0.95946 0.83046 0.99210 1.85877 1.68958 1.37900 1.30966 1.18663 0.92093 0.95466 0.86114 1.20416 1.03386 1.00023 0.93033 1.20452 0.97677 0.92934 0.92979 1.98337 1.88039 1.47358 1.69230 1.21090 0.97482 0.96196 1.01790 1.21041 0.98066 0.96518 0.93086 1.20511 0.95733 1.00369 0.97301 0.92408 0.92579 0.90336 0.84683 0.91134 0.83013 0.83435 0.85775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.71 13.96 21.45 0.30 -56.41 15 2 C 0.02 1.02 5.47 84.65 0.46 1.49 15 3 Si 0.94 41.05 26.81 68.60 1.84 42.89 15 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 15 5 H -0.29 -12.72 7.11 99.48 0.71 -12.01 15 6 H -0.24 -9.23 6.51 99.48 0.65 -8.59 15 7 C -0.50 -27.09 7.56 25.60 0.19 -26.89 15 8 H 0.03 1.87 8.06 -2.91 -0.02 1.85 15 9 C 0.05 2.00 1.91 -12.24 -0.02 1.98 15 10 H 0.05 2.13 5.40 -2.39 -0.01 2.12 15 11 C -0.15 -5.77 5.48 30.76 0.17 -5.60 15 12 C 0.06 1.77 7.03 72.12 0.51 2.27 15 13 O -0.32 -10.97 10.27 -91.83 -0.94 -11.91 15 14 C 0.12 4.48 6.47 22.52 0.15 4.62 15 15 C -0.15 -4.78 9.72 22.45 0.22 -4.56 15 16 C -0.01 -0.42 6.31 22.27 0.14 -0.28 15 17 Cl -0.06 -1.49 28.96 -2.72 -0.08 -1.57 15 18 C -0.15 -4.85 9.83 22.27 0.22 -4.63 15 19 C -0.07 -2.72 9.09 22.30 0.20 -2.52 15 20 C -0.14 -5.67 5.43 -19.74 -0.11 -5.78 15 21 H 0.27 15.02 8.31 -92.71 -0.77 14.25 15 22 H 0.06 2.30 8.10 -2.39 -0.02 2.28 15 23 H 0.08 2.84 7.62 -2.39 -0.02 2.83 15 24 H 0.14 3.01 8.14 -2.39 -0.02 2.99 15 25 H 0.07 1.93 8.14 -2.39 -0.02 1.91 15 26 H 0.15 4.15 8.06 -2.91 -0.02 4.12 15 27 H 0.15 4.13 8.06 -2.91 -0.02 4.11 15 28 H 0.12 5.30 7.36 -2.91 -0.02 5.28 15 Total: -1.00 -60.84 252.28 4.35 -56.48 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 1.11 Total: 10.42 kcal Atomic # 6 Polarization: -42.03 SS G_CDS: 2.13 Total: -39.90 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: 0.30 Total: -56.41 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: -0.94 Total: -11.91 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 1.84 Total: 42.89 kcal Atomic # 17 Polarization: -1.49 SS G_CDS: -0.08 Total: -1.57 kcal Total: -60.84 4.35 -56.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261068442.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.212 kcal (2) G-P(sol) polarization free energy of solvation -60.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds