Wall clock time and date at job start Mon Mar 30 2020 05:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30851 * 1 3 3 Si 1.86796 * 120.00192 * 2 1 4 4 H 1.48501 * 109.47186 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47274 * 299.99390 * 3 2 1 6 6 H 1.48497 * 109.47380 * 59.99841 * 3 2 1 7 7 C 1.39952 * 119.99766 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99956 * 163.19057 * 7 2 1 9 9 C 1.41099 * 120.00129 * 343.18699 * 7 2 1 10 10 C 1.40632 * 120.21731 * 334.39909 * 9 7 2 11 11 C 1.37741 * 120.31853 * 179.97438 * 10 9 7 12 12 C 1.38501 * 120.43941 * 0.06911 * 11 10 9 13 13 C 1.39304 * 120.27759 * 359.91153 * 12 11 10 14 14 C 1.47577 * 133.89529 * 180.02562 * 13 12 11 15 15 C 1.39064 * 134.04947 * 0.04395 * 14 13 12 16 16 C 1.37910 * 119.72077 * 179.97438 * 15 14 13 17 17 C 1.38599 * 120.12828 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.62996 * 0.02562 * 17 16 15 19 19 C 1.39019 * 120.06791 * 359.97438 * 18 17 16 20 20 O 1.35080 * 132.41242 * 180.02562 * 19 18 17 21 21 C 1.34799 * 111.56535 * 179.97438 * 20 19 18 22 22 H 0.96997 * 119.99471 * 0.02562 * 1 2 3 23 23 H 1.07997 * 119.84013 * 0.02562 * 10 9 7 24 24 H 1.07995 * 119.77886 * 180.02562 * 11 10 9 25 25 H 1.07998 * 119.86171 * 179.97438 * 12 11 10 26 26 H 1.08006 * 120.14175 * 359.97438 * 15 14 13 27 27 H 1.08001 * 119.93400 * 180.27811 * 16 15 14 28 28 H 1.08006 * 119.68785 * 179.97438 * 17 16 15 29 29 H 1.07995 * 119.96767 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.7025 1.3463 0.0006 5 1 1.8840 2.3963 -1.2125 6 1 1.8838 2.3964 1.2124 7 6 2.0082 -1.2121 0.0005 8 1 3.0536 -1.2322 -0.2699 9 6 1.3479 -2.4077 0.3545 10 6 0.2195 -2.3716 1.1930 11 6 -0.4270 -3.5375 1.5394 12 6 0.0268 -4.7581 1.0680 13 6 1.1423 -4.8190 0.2358 14 6 1.8677 -5.9218 -0.4240 15 6 1.7044 -7.3024 -0.4584 16 6 2.5789 -8.0763 -1.1922 17 6 3.6163 -7.4803 -1.8919 18 6 3.7880 -6.1125 -1.8638 19 6 2.9165 -5.3161 -1.1297 20 8 2.8506 -3.9817 -0.9304 21 6 1.8176 -3.6507 -0.1301 22 1 -0.4849 0.8401 -0.0004 23 1 -0.1425 -1.4250 1.5663 24 1 -1.2930 -3.4995 2.1835 25 1 -0.4870 -5.6665 1.3459 26 1 0.8962 -7.7668 0.0872 27 1 2.4526 -9.1484 -1.2250 28 1 4.2972 -8.0931 -2.4639 29 1 4.5997 -5.6593 -2.4133 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261091783.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:36 Heat of formation + Delta-G solvation = 28.051274 kcal Electronic energy + Delta-G solvation = -15644.328453 eV Core-core repulsion = 13076.818142 eV Total energy + Delta-G solvation = -2567.510311 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.073 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.33821 -37.43484 -36.43161 -33.85266 -31.31695 -30.20741 -29.20443 -27.97802 -25.40247 -22.94607 -22.10232 -21.02842 -20.05791 -17.50665 -17.31928 -16.07497 -15.55089 -15.16493 -14.99656 -14.25393 -13.97989 -13.33629 -13.08863 -12.88893 -12.35848 -11.89158 -11.74756 -11.52513 -11.26323 -11.17913 -10.89022 -10.57612 -10.52314 -10.10355 -9.61962 -9.40707 -8.89680 -8.29043 -7.25747 -7.17213 -6.88920 -4.45637 1.44833 1.77497 2.67050 2.91980 3.02021 3.08065 3.11378 3.64143 3.84645 4.20322 4.52729 5.15571 5.23043 5.30587 5.42272 5.66895 5.75915 5.87300 6.10445 6.31883 6.33727 6.55427 6.67940 6.79894 6.85381 6.94631 7.10285 7.17777 7.27235 7.53226 7.61677 7.85759 8.00870 8.08861 8.45332 8.63454 8.72925 10.02951 Molecular weight = 238.07amu Principal moments of inertia in cm(-1) A = 0.035104 B = 0.007290 C = 0.006142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.435636 B = 3839.791050 C = 4557.399488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.074 3.926 3 Si 0.914 3.086 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.450 4.450 8 H 0.083 0.917 9 C 0.128 3.872 10 C -0.156 4.156 11 C -0.102 4.102 12 C -0.199 4.199 13 C -0.098 4.098 14 C -0.119 4.119 15 C -0.069 4.069 16 C -0.160 4.160 17 C -0.101 4.101 18 C -0.128 4.128 19 C 0.081 3.919 20 O -0.194 6.194 21 C -0.018 4.018 22 H 0.284 0.716 23 H 0.132 0.868 24 H 0.100 0.900 25 H 0.095 0.905 26 H 0.119 0.881 27 H 0.121 0.879 28 H 0.126 0.874 29 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.707 -6.898 -0.762 7.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.144 4.144 3 Si 0.738 3.262 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.479 4.479 8 H 0.102 0.898 9 C 0.125 3.875 10 C -0.176 4.176 11 C -0.120 4.120 12 C -0.219 4.219 13 C -0.099 4.099 14 C -0.120 4.120 15 C -0.087 4.087 16 C -0.178 4.178 17 C -0.119 4.119 18 C -0.146 4.146 19 C 0.032 3.968 20 O -0.098 6.098 21 C -0.063 4.063 22 H 0.095 0.905 23 H 0.149 0.851 24 H 0.118 0.882 25 H 0.113 0.887 26 H 0.137 0.863 27 H 0.139 0.861 28 H 0.143 0.857 29 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.667 -6.520 -0.879 7.099 hybrid contribution 0.180 0.650 -0.047 0.676 sum 2.846 -5.870 -0.926 6.589 Atomic orbital electron populations 1.69818 1.07619 1.29598 1.34136 1.25930 0.94819 1.01531 0.92147 0.86157 0.81040 0.80331 0.78712 1.18207 1.19781 1.19473 1.19574 0.98103 0.90828 1.39399 0.89838 1.16704 0.92282 0.87775 0.90726 1.21054 0.98271 0.97563 1.00710 1.20617 0.98914 0.92564 0.99908 1.19683 0.99354 0.96823 1.06000 1.18999 0.98579 0.90519 1.01800 1.19611 0.97576 0.93753 1.01110 1.20436 0.98717 0.91319 0.98232 1.20820 0.96967 0.99286 1.00742 1.20705 0.98329 0.93105 0.99738 1.19857 1.00084 0.92377 1.02303 1.19719 0.96593 0.82486 0.97959 1.83854 1.46245 1.20449 1.59260 1.19996 0.90852 0.95743 0.99673 0.90523 0.85068 0.88191 0.88669 0.86255 0.86138 0.85652 0.85732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.70 10.96 55.55 0.61 -19.09 15 2 C 0.07 1.83 5.15 -17.33 -0.09 1.74 15 3 Si 0.91 18.32 29.59 -169.99 -5.03 13.29 15 4 H -0.26 -5.19 7.11 56.52 0.40 -4.79 15 5 H -0.27 -5.38 7.11 56.52 0.40 -4.97 15 6 H -0.27 -5.25 7.11 56.52 0.40 -4.85 15 7 C -0.45 -12.01 9.04 -37.86 -0.34 -12.35 15 8 H 0.08 2.20 7.90 -52.49 -0.41 1.79 15 9 C 0.13 3.46 5.58 -106.69 -0.59 2.87 15 10 C -0.16 -3.97 8.66 -38.86 -0.34 -4.31 15 11 C -0.10 -2.33 10.01 -39.67 -0.40 -2.73 15 12 C -0.20 -4.54 10.09 -39.09 -0.39 -4.94 15 13 C -0.10 -2.39 6.38 -105.10 -0.67 -3.06 15 14 C -0.12 -2.59 6.38 -105.05 -0.67 -3.26 15 15 C -0.07 -1.21 10.08 -39.40 -0.40 -1.61 15 16 C -0.16 -2.36 10.04 -39.57 -0.40 -2.75 15 17 C -0.10 -1.46 10.01 -39.58 -0.40 -1.86 15 18 C -0.13 -2.21 10.06 -39.42 -0.40 -2.60 15 19 C 0.08 1.76 7.35 -38.56 -0.28 1.48 15 20 O -0.19 -4.88 10.56 2.15 0.02 -4.86 15 21 C -0.02 -0.46 7.08 -37.77 -0.27 -0.73 15 22 H 0.28 6.37 8.30 -40.82 -0.34 6.03 15 23 H 0.13 3.34 6.17 -52.49 -0.32 3.02 15 24 H 0.10 1.97 8.06 -52.49 -0.42 1.55 15 25 H 0.10 1.90 8.06 -52.49 -0.42 1.48 15 26 H 0.12 1.84 8.06 -52.48 -0.42 1.41 15 27 H 0.12 1.37 8.06 -52.49 -0.42 0.95 15 28 H 0.13 1.36 8.06 -52.48 -0.42 0.93 15 29 H 0.12 1.86 8.06 -52.49 -0.42 1.43 15 LS Contribution 259.06 15.07 3.90 3.90 Total: -1.00 -28.34 259.06 -8.54 -36.88 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -2.41 Total: 3.99 kcal Atomic # 6 Polarization: -28.48 SS G_CDS: -5.63 Total: -34.12 kcal Atomic # 7 Polarization: -19.70 SS G_CDS: 0.61 Total: -19.09 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: 0.02 Total: -4.86 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -28.34 -8.54 -36.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261091783.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.934 kcal (2) G-P(sol) polarization free energy of solvation -28.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds