Wall clock time and date at job start Mon Mar 30 2020 05:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30851 * 1 3 3 Si 1.86796 * 120.00192 * 2 1 4 4 H 1.48501 * 109.47186 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47274 * 299.99390 * 3 2 1 6 6 H 1.48497 * 109.47380 * 59.99841 * 3 2 1 7 7 C 1.39952 * 119.99766 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99956 * 163.19057 * 7 2 1 9 9 C 1.41099 * 120.00129 * 343.18699 * 7 2 1 10 10 C 1.40632 * 120.21731 * 334.39909 * 9 7 2 11 11 C 1.37741 * 120.31853 * 179.97438 * 10 9 7 12 12 C 1.38501 * 120.43941 * 0.06911 * 11 10 9 13 13 C 1.39304 * 120.27759 * 359.91153 * 12 11 10 14 14 C 1.47577 * 133.89529 * 180.02562 * 13 12 11 15 15 C 1.39064 * 134.04947 * 0.04395 * 14 13 12 16 16 C 1.37910 * 119.72077 * 179.97438 * 15 14 13 17 17 C 1.38599 * 120.12828 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.62996 * 0.02562 * 17 16 15 19 19 C 1.39019 * 120.06791 * 359.97438 * 18 17 16 20 20 O 1.35080 * 132.41242 * 180.02562 * 19 18 17 21 21 C 1.34799 * 111.56535 * 179.97438 * 20 19 18 22 22 H 0.96997 * 119.99471 * 0.02562 * 1 2 3 23 23 H 1.07997 * 119.84013 * 0.02562 * 10 9 7 24 24 H 1.07995 * 119.77886 * 180.02562 * 11 10 9 25 25 H 1.07998 * 119.86171 * 179.97438 * 12 11 10 26 26 H 1.08006 * 120.14175 * 359.97438 * 15 14 13 27 27 H 1.08001 * 119.93400 * 180.27811 * 16 15 14 28 28 H 1.08006 * 119.68785 * 179.97438 * 17 16 15 29 29 H 1.07995 * 119.96767 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.7025 1.3463 0.0006 5 1 1.8840 2.3963 -1.2125 6 1 1.8838 2.3964 1.2124 7 6 2.0082 -1.2121 0.0005 8 1 3.0536 -1.2322 -0.2699 9 6 1.3479 -2.4077 0.3545 10 6 0.2195 -2.3716 1.1930 11 6 -0.4270 -3.5375 1.5394 12 6 0.0268 -4.7581 1.0680 13 6 1.1423 -4.8190 0.2358 14 6 1.8677 -5.9218 -0.4240 15 6 1.7044 -7.3024 -0.4584 16 6 2.5789 -8.0763 -1.1922 17 6 3.6163 -7.4803 -1.8919 18 6 3.7880 -6.1125 -1.8638 19 6 2.9165 -5.3161 -1.1297 20 8 2.8506 -3.9817 -0.9304 21 6 1.8176 -3.6507 -0.1301 22 1 -0.4849 0.8401 -0.0004 23 1 -0.1425 -1.4250 1.5663 24 1 -1.2930 -3.4995 2.1835 25 1 -0.4870 -5.6665 1.3459 26 1 0.8962 -7.7668 0.0872 27 1 2.4526 -9.1484 -1.2250 28 1 4.2972 -8.0931 -2.4639 29 1 4.5997 -5.6593 -2.4133 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261091783.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:36 Heat of formation + Delta-G solvation = 13.252069 kcal Electronic energy + Delta-G solvation = -15644.970195 eV Core-core repulsion = 13076.818142 eV Total energy + Delta-G solvation = -2568.152053 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.073 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.00364 -38.95357 -38.15971 -35.69584 -32.91793 -31.84987 -30.81783 -29.60917 -27.30308 -24.49619 -23.67243 -22.74119 -21.73065 -19.25394 -18.97349 -17.82199 -17.08434 -16.90252 -16.67738 -15.68631 -15.59905 -14.87399 -14.74013 -14.52710 -13.98041 -13.58762 -13.28550 -13.08334 -12.90443 -12.73015 -12.67432 -12.20328 -12.10467 -11.77068 -11.42107 -11.19549 -10.47375 -9.85778 -9.02153 -8.89214 -8.71143 -6.42294 -0.03356 0.32715 0.92208 1.16020 1.35114 1.47504 1.51082 2.02543 2.17048 2.57805 2.88846 3.48934 3.65468 3.82555 4.12234 4.23365 4.36963 4.53198 4.55530 4.65029 4.89831 4.92102 5.03297 5.20726 5.26773 5.42985 5.52492 5.56382 5.68627 5.72665 5.93495 5.97870 6.14882 6.29976 6.54831 6.71999 6.85181 8.22648 Molecular weight = 238.07amu Principal moments of inertia in cm(-1) A = 0.035104 B = 0.007290 C = 0.006142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.435636 B = 3839.791050 C = 4557.399488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.038 3.962 3 Si 0.988 3.012 4 H -0.264 1.264 5 H -0.262 1.262 6 H -0.254 1.254 7 C -0.493 4.493 8 H 0.067 0.933 9 C 0.095 3.905 10 C -0.176 4.176 11 C -0.103 4.103 12 C -0.198 4.198 13 C -0.112 4.112 14 C -0.151 4.151 15 C -0.075 4.075 16 C -0.140 4.140 17 C -0.079 4.079 18 C -0.136 4.136 19 C 0.040 3.960 20 O -0.226 6.226 21 C -0.056 4.056 22 H 0.295 0.705 23 H 0.123 0.877 24 H 0.134 0.866 25 H 0.129 0.871 26 H 0.141 0.859 27 H 0.170 0.830 28 H 0.177 0.823 29 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.083 -9.540 -1.267 10.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.178 4.178 3 Si 0.807 3.193 4 H -0.188 1.188 5 H -0.186 1.186 6 H -0.178 1.178 7 C -0.521 4.521 8 H 0.085 0.915 9 C 0.093 3.907 10 C -0.196 4.196 11 C -0.121 4.121 12 C -0.217 4.217 13 C -0.113 4.113 14 C -0.152 4.152 15 C -0.093 4.093 16 C -0.158 4.158 17 C -0.096 4.096 18 C -0.155 4.155 19 C -0.006 4.006 20 O -0.132 6.132 21 C -0.101 4.101 22 H 0.106 0.894 23 H 0.141 0.859 24 H 0.152 0.848 25 H 0.146 0.854 26 H 0.159 0.841 27 H 0.188 0.812 28 H 0.195 0.805 29 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.030 -9.194 -1.382 9.778 hybrid contribution 0.110 1.131 0.023 1.137 sum 3.140 -8.063 -1.358 8.759 Atomic orbital electron populations 1.69836 1.08815 1.31115 1.34310 1.26748 0.95650 1.04352 0.91013 0.85080 0.79011 0.75635 0.79524 1.18810 1.18620 1.17819 1.19675 0.97748 0.92449 1.42273 0.91510 1.17110 0.93396 0.88606 0.91612 1.21078 0.98722 0.98281 1.01486 1.20972 0.99478 0.91838 0.99813 1.20116 0.98760 0.97995 1.04835 1.19509 0.98757 0.91289 1.01722 1.19824 0.97854 0.95213 1.02280 1.20842 1.00109 0.89551 0.98820 1.21444 0.95015 1.01444 0.97880 1.21378 0.98200 0.91928 0.98119 1.20379 0.99834 0.93519 1.01750 1.20465 0.98643 0.81419 1.00096 1.83763 1.46518 1.22928 1.59988 1.20274 0.92230 0.96570 1.01067 0.89450 0.85939 0.84791 0.85355 0.84071 0.81222 0.80538 0.83929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.51 10.96 21.83 0.24 -42.27 15 2 C 0.04 1.97 5.15 85.25 0.44 2.41 15 3 Si 0.99 38.88 29.59 68.60 2.03 40.91 15 4 H -0.26 -10.50 7.11 99.48 0.71 -9.79 15 5 H -0.26 -9.76 7.11 99.48 0.71 -9.05 15 6 H -0.25 -9.29 7.11 99.48 0.71 -8.58 15 7 C -0.49 -28.32 9.04 23.39 0.21 -28.11 15 8 H 0.07 3.87 7.90 -2.91 -0.02 3.85 15 9 C 0.10 5.54 5.58 -21.20 -0.12 5.42 15 10 C -0.18 -9.42 8.66 22.74 0.20 -9.22 15 11 C -0.10 -4.79 10.01 22.21 0.22 -4.57 15 12 C -0.20 -9.05 10.09 22.59 0.23 -8.83 15 13 C -0.11 -5.63 6.38 -20.18 -0.13 -5.76 15 14 C -0.15 -6.53 6.38 -20.14 -0.13 -6.66 15 15 C -0.08 -2.41 10.08 22.39 0.23 -2.19 15 16 C -0.14 -3.36 10.04 22.28 0.22 -3.13 15 17 C -0.08 -1.88 10.01 22.27 0.22 -1.66 15 18 C -0.14 -4.46 10.06 22.37 0.23 -4.24 15 19 C 0.04 1.80 7.35 22.93 0.17 1.97 15 20 O -0.23 -12.22 10.56 -15.22 -0.16 -12.38 15 21 C -0.06 -3.19 7.08 23.44 0.17 -3.03 15 22 H 0.29 13.57 8.30 -92.71 -0.77 12.80 15 23 H 0.12 6.61 6.17 -2.91 -0.02 6.59 15 24 H 0.13 5.16 8.06 -2.91 -0.02 5.14 15 25 H 0.13 4.89 8.06 -2.91 -0.02 4.86 15 26 H 0.14 3.81 8.06 -2.91 -0.02 3.79 15 27 H 0.17 2.51 8.06 -2.91 -0.02 2.49 15 28 H 0.18 2.51 8.06 -2.91 -0.02 2.48 15 29 H 0.14 4.01 8.06 -2.91 -0.02 3.99 15 Total: -1.00 -68.20 259.06 5.43 -62.77 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: 1.17 Total: 18.57 kcal Atomic # 6 Polarization: -69.75 SS G_CDS: 2.15 Total: -67.59 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: 0.24 Total: -42.27 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: -0.16 Total: -12.38 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 2.03 Total: 40.91 kcal Total: -68.20 5.43 -62.77 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261091783.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.022 kcal (2) G-P(sol) polarization free energy of solvation -68.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds