Wall clock time and date at job start Mon Mar 30 2020 05:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00364 * 2 1 4 4 H 1.48494 * 109.47358 * 264.71174 * 3 2 1 5 5 H 1.48506 * 109.46862 * 24.71025 * 3 2 1 6 6 H 1.48504 * 109.47531 * 144.70853 * 3 2 1 7 7 C 1.37886 * 119.99897 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99671 * 3.95686 * 7 2 1 9 9 C 1.50699 * 120.00185 * 183.95438 * 7 2 1 10 10 H 1.09006 * 109.69387 * 334.95151 * 9 7 2 11 11 C 1.53409 * 109.73457 * 95.53512 * 9 7 2 12 12 O 1.42810 * 108.40499 * 184.43369 * 11 9 7 13 13 C 1.35842 * 117.88055 * 310.94300 * 12 11 9 14 14 C 1.39130 * 118.48684 * 196.76897 * 13 12 11 15 15 C 1.38079 * 120.20852 * 180.13001 * 14 13 12 16 16 Cl 1.73595 * 120.03536 * 180.17268 * 15 14 13 17 17 C 1.38413 * 119.93171 * 0.25856 * 15 14 13 18 18 C 1.38086 * 119.96534 * 359.81140 * 17 15 14 19 19 C 1.38383 * 121.80787 * 17.04338 * 13 12 11 20 20 C 1.50772 * 121.40407 * 359.60070 * 19 13 12 21 21 H 0.96998 * 119.99799 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.68223 * 304.17626 * 11 9 7 23 23 H 1.08998 * 109.68113 * 64.68885 * 11 9 7 24 24 H 1.08004 * 119.89427 * 0.42560 * 14 13 12 25 25 H 1.07990 * 120.01737 * 179.79084 * 17 15 14 26 26 H 1.08001 * 119.83264 * 180.02562 * 18 17 15 27 27 H 1.09002 * 109.43801 * 137.91416 * 20 19 13 28 28 H 1.08993 * 109.44006 * 257.79853 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.6085 1.9818 -1.3940 5 1 1.3952 2.6823 0.5853 6 1 3.4864 1.4750 0.8089 7 6 2.0045 -1.1941 -0.0005 8 1 1.4664 -2.1282 -0.0655 9 6 3.5088 -1.1958 0.0895 10 1 3.9006 -0.2518 -0.2896 11 6 3.9402 -1.3858 1.5493 12 8 5.3627 -1.2793 1.6167 13 6 6.0965 -2.0032 0.7319 14 6 7.4492 -2.1972 0.9935 15 6 8.2290 -2.9250 0.1167 16 17 9.9153 -3.1680 0.4498 17 6 7.6652 -3.4591 -1.0291 18 6 6.3232 -3.2667 -1.2916 19 6 5.5356 -2.5408 -0.4133 20 6 4.0738 -2.3565 -0.7331 21 1 -0.4850 0.8400 0.0004 22 1 3.4845 -0.6144 2.1702 23 1 3.6286 -2.3700 1.8991 24 1 7.8895 -1.7812 1.8876 25 1 8.2745 -4.0256 -1.7174 26 1 5.8854 -3.6848 -2.1860 27 1 3.9594 -2.1380 -1.7949 28 1 3.5315 -3.2704 -0.4910 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261098868.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:53 Heat of formation + Delta-G solvation = -35.775172 kcal Electronic energy + Delta-G solvation = -14453.472024 eV Core-core repulsion = 11880.761141 eV Total energy + Delta-G solvation = -2572.710883 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.22954 -37.48972 -36.13784 -34.42749 -32.23526 -30.14137 -30.07098 -25.41900 -25.00801 -22.62770 -21.84120 -19.12142 -17.49596 -17.29973 -16.14524 -15.51245 -14.73815 -14.33347 -14.19072 -13.52543 -13.38058 -13.27323 -12.94033 -12.63427 -12.09776 -11.84367 -11.41173 -11.11433 -10.95473 -10.80716 -10.44404 -10.06167 -9.88155 -9.71087 -9.28861 -8.72341 -8.49002 -7.82689 -6.26318 -4.29683 1.32946 1.55797 2.15460 3.19342 3.28673 3.32184 3.76603 3.96661 4.27128 4.97070 4.98425 5.20415 5.24889 5.51443 5.54790 5.81522 5.96601 6.03682 6.18343 6.29515 6.32879 6.35842 6.48588 6.71680 6.85260 6.95021 7.06052 7.48652 7.90326 8.31487 8.77727 9.34916 10.85705 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.049064 B = 0.006260 C = 0.005977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.550764 B = 4471.634087 C = 4683.609758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.076 3.924 3 Si 0.873 3.127 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.519 4.519 8 H 0.078 0.922 9 C -0.017 4.017 10 H 0.045 0.955 11 C 0.059 3.941 12 O -0.326 6.326 13 C 0.156 3.844 14 C -0.153 4.153 15 C -0.010 4.010 16 Cl -0.080 7.080 17 C -0.153 4.153 18 C -0.078 4.078 19 C -0.145 4.145 20 C -0.069 4.069 21 H 0.267 0.733 22 H 0.102 0.898 23 H 0.058 0.942 24 H 0.135 0.865 25 H 0.128 0.872 26 H 0.131 0.869 27 H 0.076 0.924 28 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.047 -5.019 -0.400 14.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.127 4.127 3 Si 0.700 3.300 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.186 1.186 7 C -0.557 4.557 8 H 0.096 0.904 9 C -0.036 4.036 10 H 0.063 0.937 11 C -0.015 4.015 12 O -0.240 6.240 13 C 0.109 3.891 14 C -0.172 4.172 15 C -0.037 4.037 16 Cl -0.051 7.051 17 C -0.172 4.172 18 C -0.096 4.096 19 C -0.146 4.146 20 C -0.106 4.106 21 H 0.077 0.923 22 H 0.120 0.880 23 H 0.076 0.924 24 H 0.153 0.847 25 H 0.146 0.854 26 H 0.149 0.851 27 H 0.095 0.905 28 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 14.057 -4.786 -0.209 14.851 hybrid contribution 0.324 0.826 -0.099 0.893 sum 14.381 -3.960 -0.308 14.920 Atomic orbital electron populations 1.69885 1.06337 1.27427 1.49046 1.25091 0.94753 0.99110 0.93761 0.86913 0.80362 0.83512 0.79260 1.19885 1.21232 1.18601 1.20797 0.87802 0.94938 1.52121 0.90366 1.19776 0.97957 0.94983 0.90864 0.93660 1.23835 0.74011 1.02065 1.01578 1.85914 1.22111 1.62723 1.53233 1.18546 0.90382 0.91283 0.88908 1.20322 0.91945 1.03538 1.01431 1.20406 0.84690 1.01715 0.96890 1.98340 1.15554 1.95865 1.95345 1.20796 0.95568 1.03722 0.97099 1.20899 0.92482 0.97241 0.98971 1.20507 0.98884 1.00702 0.94538 1.20689 0.87869 1.00643 1.01374 0.92270 0.88023 0.92363 0.84721 0.85378 0.85063 0.90521 0.90611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.80 13.96 55.43 0.77 -25.03 15 2 C 0.08 2.08 5.47 -17.82 -0.10 1.98 15 3 Si 0.87 20.59 26.96 -169.99 -4.58 16.01 15 4 H -0.27 -6.40 7.11 56.52 0.40 -5.99 15 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 15 6 H -0.26 -6.00 6.86 56.52 0.39 -5.62 15 7 C -0.52 -13.53 8.86 -34.44 -0.31 -13.83 15 8 H 0.08 2.20 8.06 -52.49 -0.42 1.77 15 9 C -0.02 -0.37 1.97 -91.52 -0.18 -0.55 15 10 H 0.05 1.05 5.36 -51.93 -0.28 0.77 15 11 C 0.06 1.22 6.31 37.37 0.24 1.45 15 12 O -0.33 -6.49 10.27 -19.24 -0.20 -6.69 15 13 C 0.16 2.84 6.47 -39.20 -0.25 2.58 15 14 C -0.15 -2.44 9.72 -39.31 -0.38 -2.82 15 15 C -0.01 -0.15 6.31 -39.58 -0.25 -0.40 15 16 Cl -0.08 -1.00 28.96 -51.86 -1.50 -2.50 15 17 C -0.15 -2.07 9.83 -39.57 -0.39 -2.46 15 18 C -0.08 -1.13 9.66 -39.53 -0.38 -1.51 15 19 C -0.15 -2.54 5.75 -104.43 -0.60 -3.14 15 20 C -0.07 -1.31 5.17 -27.81 -0.14 -1.45 15 21 H 0.27 7.28 8.31 -40.82 -0.34 6.94 15 22 H 0.10 2.10 8.14 -51.93 -0.42 1.68 15 23 H 0.06 1.14 8.14 -51.93 -0.42 0.72 15 24 H 0.13 1.98 8.06 -52.48 -0.42 1.56 15 25 H 0.13 1.42 8.06 -52.49 -0.42 1.00 15 26 H 0.13 1.59 8.06 -52.49 -0.42 1.17 15 27 H 0.08 1.40 8.14 -51.93 -0.42 0.98 15 28 H 0.08 1.42 8.09 -51.93 -0.42 1.00 15 LS Contribution 255.17 15.07 3.85 3.85 Total: -1.00 -27.65 255.17 -7.22 -34.87 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: -2.81 Total: -0.35 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: -2.75 Total: -20.15 kcal Atomic # 7 Polarization: -25.80 SS G_CDS: 0.77 Total: -25.03 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.20 Total: -6.69 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.58 Total: 16.01 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.50 Total: -2.50 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -27.65 -7.22 -34.87 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261098868.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.909 kcal (2) G-P(sol) polarization free energy of solvation -27.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds