Wall clock time and date at job start Mon Mar 30 2020 05:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00364 * 2 1 4 4 H 1.48494 * 109.47358 * 264.71174 * 3 2 1 5 5 H 1.48506 * 109.46862 * 24.71025 * 3 2 1 6 6 H 1.48504 * 109.47531 * 144.70853 * 3 2 1 7 7 C 1.37886 * 119.99897 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99671 * 3.95686 * 7 2 1 9 9 C 1.50699 * 120.00185 * 183.95438 * 7 2 1 10 10 H 1.09006 * 109.69387 * 334.95151 * 9 7 2 11 11 C 1.53409 * 109.73457 * 95.53512 * 9 7 2 12 12 O 1.42810 * 108.40499 * 184.43369 * 11 9 7 13 13 C 1.35842 * 117.88055 * 310.94300 * 12 11 9 14 14 C 1.39130 * 118.48684 * 196.76897 * 13 12 11 15 15 C 1.38079 * 120.20852 * 180.13001 * 14 13 12 16 16 Cl 1.73595 * 120.03536 * 180.17268 * 15 14 13 17 17 C 1.38413 * 119.93171 * 0.25856 * 15 14 13 18 18 C 1.38086 * 119.96534 * 359.81140 * 17 15 14 19 19 C 1.38383 * 121.80787 * 17.04338 * 13 12 11 20 20 C 1.50772 * 121.40407 * 359.60070 * 19 13 12 21 21 H 0.96998 * 119.99799 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.68223 * 304.17626 * 11 9 7 23 23 H 1.08998 * 109.68113 * 64.68885 * 11 9 7 24 24 H 1.08004 * 119.89427 * 0.42560 * 14 13 12 25 25 H 1.07990 * 120.01737 * 179.79084 * 17 15 14 26 26 H 1.08001 * 119.83264 * 180.02562 * 18 17 15 27 27 H 1.09002 * 109.43801 * 137.91416 * 20 19 13 28 28 H 1.08993 * 109.44006 * 257.79853 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.6085 1.9818 -1.3940 5 1 1.3952 2.6823 0.5853 6 1 3.4864 1.4750 0.8089 7 6 2.0045 -1.1941 -0.0005 8 1 1.4664 -2.1282 -0.0655 9 6 3.5088 -1.1958 0.0895 10 1 3.9006 -0.2518 -0.2896 11 6 3.9402 -1.3858 1.5493 12 8 5.3627 -1.2793 1.6167 13 6 6.0965 -2.0032 0.7319 14 6 7.4492 -2.1972 0.9935 15 6 8.2290 -2.9250 0.1167 16 17 9.9153 -3.1680 0.4498 17 6 7.6652 -3.4591 -1.0291 18 6 6.3232 -3.2667 -1.2916 19 6 5.5356 -2.5408 -0.4133 20 6 4.0738 -2.3565 -0.7331 21 1 -0.4850 0.8400 0.0004 22 1 3.4845 -0.6144 2.1702 23 1 3.6286 -2.3700 1.8991 24 1 7.8895 -1.7812 1.8876 25 1 8.2745 -4.0256 -1.7174 26 1 5.8854 -3.6848 -2.1860 27 1 3.9594 -2.1380 -1.7949 28 1 3.5315 -3.2704 -0.4910 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261098868.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:53 Heat of formation + Delta-G solvation = -50.970467 kcal Electronic energy + Delta-G solvation = -14454.130941 eV Core-core repulsion = 11880.761141 eV Total energy + Delta-G solvation = -2573.369800 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.60750 -38.76370 -37.26130 -36.13926 -34.07804 -31.60898 -31.34857 -27.19846 -26.52786 -23.96299 -23.27209 -20.68945 -19.26655 -18.81112 -17.57493 -16.82931 -16.42981 -15.82888 -15.59789 -15.07079 -14.83132 -14.70669 -14.41118 -14.22208 -13.52258 -13.17076 -12.96209 -12.79828 -12.45216 -11.99305 -11.84321 -11.77950 -11.62453 -11.37279 -11.12538 -10.75588 -9.70311 -9.13602 -8.36017 -6.42317 0.11947 0.35041 1.04612 1.31796 1.35966 1.45239 2.29103 2.43202 2.64498 2.98008 3.77802 3.88785 4.05368 4.16284 4.22058 4.30687 4.47557 4.58712 4.73710 4.79969 4.84008 5.14099 5.24748 5.28805 5.32645 5.47074 5.53031 5.69270 6.18424 6.48166 6.67260 7.25122 8.79617 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.049064 B = 0.006260 C = 0.005977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.550764 B = 4471.634087 C = 4683.609758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.024 3.976 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.252 1.252 7 C -0.515 4.515 8 H 0.045 0.955 9 C -0.019 4.019 10 H 0.038 0.962 11 C 0.067 3.933 12 O -0.336 6.336 13 C 0.124 3.876 14 C -0.155 4.155 15 C -0.011 4.011 16 Cl -0.059 7.059 17 C -0.140 4.140 18 C -0.072 4.072 19 C -0.161 4.161 20 C -0.063 4.063 21 H 0.269 0.731 22 H 0.096 0.904 23 H 0.061 0.939 24 H 0.142 0.858 25 H 0.161 0.839 26 H 0.158 0.842 27 H 0.082 0.918 28 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.788 -5.403 -1.121 17.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.175 4.175 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.176 1.176 7 C -0.553 4.553 8 H 0.063 0.937 9 C -0.038 4.038 10 H 0.056 0.944 11 C -0.008 4.008 12 O -0.250 6.250 13 C 0.078 3.922 14 C -0.174 4.174 15 C -0.038 4.038 16 Cl -0.030 7.030 17 C -0.158 4.158 18 C -0.090 4.090 19 C -0.162 4.162 20 C -0.100 4.100 21 H 0.078 0.922 22 H 0.114 0.886 23 H 0.080 0.920 24 H 0.160 0.840 25 H 0.178 0.822 26 H 0.176 0.824 27 H 0.100 0.900 28 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 16.829 -5.186 -0.932 17.634 hybrid contribution -0.408 0.804 0.099 0.907 sum 16.421 -4.382 -0.833 17.016 Atomic orbital electron populations 1.70012 1.08023 1.28342 1.51326 1.25840 0.95349 1.02553 0.93747 0.85947 0.79333 0.79416 0.79586 1.19201 1.21037 1.17585 1.20990 0.89959 0.93552 1.50819 0.93656 1.19729 0.95318 0.96104 0.92692 0.94410 1.23504 0.75106 1.02073 1.00070 1.85877 1.21145 1.63825 1.54168 1.18839 0.91206 0.92762 0.89391 1.20442 0.91190 1.03670 1.02131 1.20566 0.85685 1.00840 0.96714 1.98354 1.13712 1.95657 1.95274 1.21171 0.95320 1.02470 0.96861 1.21169 0.92718 0.96045 0.99028 1.20416 0.97989 1.02398 0.95408 1.20510 0.89348 0.99079 1.01031 0.92186 0.88617 0.92041 0.83980 0.82160 0.82432 0.89973 0.90924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.85 13.96 21.45 0.30 -55.55 15 2 C 0.02 1.33 5.47 84.66 0.46 1.80 15 3 Si 0.93 42.75 26.96 68.60 1.85 44.60 15 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 15 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 15 6 H -0.25 -11.05 6.86 99.48 0.68 -10.37 15 7 C -0.52 -27.51 8.86 25.60 0.23 -27.28 15 8 H 0.05 2.65 8.06 -2.91 -0.02 2.63 15 9 C -0.02 -0.86 1.97 -11.38 -0.02 -0.88 15 10 H 0.04 1.73 5.36 -2.38 -0.01 1.72 15 11 C 0.07 2.77 6.31 72.12 0.45 3.22 15 12 O -0.34 -13.16 10.27 -91.78 -0.94 -14.11 15 13 C 0.12 4.34 6.47 22.52 0.15 4.49 15 14 C -0.16 -4.61 9.72 22.45 0.22 -4.39 15 15 C -0.01 -0.29 6.31 22.27 0.14 -0.15 15 16 Cl -0.06 -1.27 28.96 -2.72 -0.08 -1.35 15 17 C -0.14 -3.21 9.83 22.28 0.22 -2.99 15 18 C -0.07 -1.84 9.66 22.30 0.22 -1.63 15 19 C -0.16 -5.35 5.75 -19.74 -0.11 -5.46 15 20 C -0.06 -2.35 5.17 29.89 0.15 -2.19 15 21 H 0.27 15.02 8.31 -92.71 -0.77 14.25 15 22 H 0.10 3.99 8.14 -2.38 -0.02 3.97 15 23 H 0.06 2.44 8.14 -2.39 -0.02 2.42 15 24 H 0.14 3.90 8.06 -2.91 -0.02 3.88 15 25 H 0.16 2.68 8.06 -2.92 -0.02 2.66 15 26 H 0.16 3.19 8.06 -2.91 -0.02 3.16 15 27 H 0.08 2.92 8.14 -2.39 -0.02 2.90 15 28 H 0.07 2.71 8.09 -2.39 -0.02 2.69 15 Total: -1.00 -59.64 255.17 4.37 -55.27 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: 1.14 Total: 6.60 kcal Atomic # 6 Polarization: -37.56 SS G_CDS: 2.10 Total: -35.46 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: 0.30 Total: -55.55 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.94 Total: -14.11 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 1.85 Total: 44.60 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -0.08 Total: -1.35 kcal Total: -59.64 4.37 -55.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261098868.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.297 kcal (2) G-P(sol) polarization free energy of solvation -59.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds