Wall clock time and date at job start Mon Mar 30 2020 05:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00302 * 2 1 4 4 H 1.48506 * 109.46741 * 240.00111 * 3 2 1 5 5 H 1.48504 * 109.46894 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47340 * 119.99866 * 3 2 1 7 7 C 1.37877 * 119.99721 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00058 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00222 * 0.02562 * 7 2 1 10 10 C 1.50693 * 109.47231 * 179.97438 * 9 7 2 11 11 C 1.38246 * 119.96029 * 99.81270 * 10 9 7 12 12 C 1.38644 * 120.09726 * 179.75855 * 11 10 9 13 13 C 1.39005 * 119.86338 * 0.30098 * 12 11 10 14 14 C 1.38663 * 119.84619 * 359.96450 * 13 12 11 15 15 C 1.38415 * 119.95552 * 279.99421 * 10 9 7 16 16 F 1.35098 * 119.96884 * 0.08030 * 15 10 9 17 17 O 1.36103 * 120.78514 * 180.02562 * 13 12 11 18 18 C 1.43180 * 116.70016 * 342.72629 * 17 13 12 19 19 C 1.53478 * 108.22990 * 46.27720 * 18 17 13 20 20 O 1.36165 * 119.37122 * 180.02562 * 12 11 10 21 21 H 0.96999 * 119.99616 * 0.02562 * 1 2 3 22 22 H 1.08993 * 109.47078 * 59.98986 * 9 7 2 23 23 H 1.09002 * 109.46694 * 299.99537 * 9 7 2 24 24 H 1.07995 * 119.94650 * 0.18257 * 11 10 9 25 25 H 1.07999 * 119.97757 * 179.91239 * 14 13 12 26 26 H 1.08997 * 109.71759 * 165.96146 * 18 17 13 27 27 H 1.09008 * 109.70891 * 286.60027 * 18 17 13 28 28 H 1.09003 * 109.70636 * 59.91987 * 19 18 17 29 29 H 1.08998 * 109.70922 * 180.54203 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6962 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2302 -3.6446 0.0005 11 6 2.5237 -4.3020 1.1807 12 6 3.4204 -5.3594 1.1831 13 6 4.0289 -5.7536 -0.0028 14 6 3.7358 -5.0879 -1.1833 15 6 2.8375 -4.0347 -1.1805 16 9 2.5530 -3.3872 -2.3316 17 8 4.9116 -6.7894 -0.0221 18 6 5.4636 -7.1878 1.2375 19 6 4.3185 -7.2833 2.2549 20 8 3.6982 -5.9968 2.3539 21 1 -0.4849 0.8401 -0.0004 22 1 0.6246 -2.5570 -0.8895 23 1 0.6240 -2.5567 0.8904 24 1 2.0485 -3.9958 2.1009 25 1 4.2084 -5.3914 -2.1057 26 1 5.9473 -8.1593 1.1363 27 1 6.1907 -6.4472 1.5709 28 1 3.5878 -8.0186 1.9180 29 1 4.7142 -7.5764 3.2273 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261100945.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:22 Heat of formation + Delta-G solvation = -120.258928 kcal Electronic energy + Delta-G solvation = -16556.970921 eV Core-core repulsion = 13552.260172 eV Total energy + Delta-G solvation = -3004.710749 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.74032 -42.19396 -38.80336 -38.23284 -35.36052 -33.01087 -31.61748 -30.28500 -28.31668 -25.94270 -24.63420 -23.72365 -21.45811 -19.65944 -18.76663 -18.63433 -18.25085 -17.02910 -16.69226 -16.43913 -16.22082 -15.81663 -15.69877 -15.35497 -14.95741 -14.45947 -14.15348 -14.02054 -13.56884 -13.44982 -12.95961 -12.52933 -12.47456 -12.02056 -11.92716 -11.76961 -11.39442 -11.33482 -10.60965 -9.64181 -8.93711 -8.20343 -6.34121 0.10959 0.19398 1.39724 1.43180 1.51085 1.97653 2.21474 2.38047 2.56904 3.10330 3.27245 3.52837 3.67179 3.99615 4.00777 4.11380 4.20692 4.35034 4.54166 4.63208 4.69909 4.97545 5.03336 5.12575 5.27588 5.62231 5.65998 5.71094 5.87217 6.12229 6.38197 6.75614 7.33777 8.88671 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.036312 B = 0.006517 C = 0.006133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.916899 B = 4295.108223 C = 4564.001581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.966 3.034 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.531 4.531 8 H 0.053 0.947 9 C 0.062 3.938 10 C -0.088 4.088 11 C -0.100 4.100 12 C 0.048 3.952 13 C 0.061 3.939 14 C -0.145 4.145 15 C 0.082 3.918 16 F -0.143 7.143 17 O -0.313 6.313 18 C 0.014 3.986 19 C 0.011 3.989 20 O -0.319 6.319 21 H 0.267 0.733 22 H 0.006 0.994 23 H 0.017 0.983 24 H 0.140 0.860 25 H 0.163 0.837 26 H 0.163 0.837 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.908 -15.474 3.716 19.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.569 4.569 8 H 0.071 0.929 9 C 0.026 3.974 10 C -0.090 4.090 11 C -0.118 4.118 12 C 0.003 3.997 13 C 0.016 3.984 14 C -0.164 4.164 15 C 0.063 3.937 16 F -0.122 7.122 17 O -0.228 6.228 18 C -0.061 4.061 19 C -0.063 4.063 20 O -0.234 6.234 21 H 0.076 0.924 22 H 0.024 0.976 23 H 0.036 0.964 24 H 0.158 0.842 25 H 0.180 0.820 26 H 0.180 0.820 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 10.782 -15.400 3.712 19.162 hybrid contribution -0.051 1.074 -0.245 1.103 sum 10.731 -14.326 3.467 18.232 Atomic orbital electron populations 1.70063 1.07601 1.28121 1.50964 1.25896 0.95807 1.03046 0.94390 0.85494 0.78359 0.78046 0.79155 1.19544 1.20298 1.18992 1.21279 0.92979 0.91140 1.51495 0.92891 1.17985 0.92566 0.90245 0.96642 1.20245 0.99352 0.97573 0.91794 1.20180 0.97972 0.95576 0.98097 1.18747 0.98462 0.96812 0.85726 1.18252 0.94682 0.92769 0.92719 1.20270 1.01137 0.95849 0.99182 1.17258 1.00003 0.94590 0.81886 1.91443 1.92527 1.80704 1.47490 1.86259 1.56455 1.46296 1.33814 1.24051 0.95376 1.04790 0.81863 1.24056 0.95556 0.82431 1.04275 1.86309 1.77400 1.33561 1.26136 0.92441 0.97551 0.96435 0.84203 0.81976 0.81986 0.90198 0.89870 0.82416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.72 13.29 21.45 0.28 -56.43 15 2 C 0.01 0.41 5.46 84.65 0.46 0.88 15 3 Si 0.97 45.17 29.54 68.60 2.03 47.20 15 4 H -0.27 -12.35 7.11 99.48 0.71 -11.64 15 5 H -0.28 -12.52 7.11 99.48 0.71 -11.82 15 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 15 7 C -0.53 -31.21 9.09 25.60 0.23 -30.98 15 8 H 0.05 3.07 7.74 -2.91 -0.02 3.05 15 9 C 0.06 3.45 4.82 29.10 0.14 3.59 15 10 C -0.09 -4.09 5.08 -19.82 -0.10 -4.19 15 11 C -0.10 -4.00 9.58 22.37 0.21 -3.79 15 12 C 0.05 1.64 6.49 22.55 0.15 1.79 15 13 C 0.06 1.98 6.49 22.56 0.15 2.13 15 14 C -0.15 -5.08 9.94 22.42 0.22 -4.85 15 15 C 0.08 3.52 7.23 22.36 0.16 3.69 15 16 F -0.14 -6.63 16.65 44.97 0.75 -5.88 15 17 O -0.31 -8.09 10.42 -82.51 -0.86 -8.95 15 18 C 0.01 0.22 7.26 72.14 0.52 0.74 15 19 C 0.01 0.19 7.26 72.14 0.52 0.71 15 20 O -0.32 -9.05 10.42 -83.22 -0.87 -9.92 15 21 H 0.27 15.27 8.31 -92.71 -0.77 14.50 15 22 H 0.01 0.37 7.94 -2.39 -0.02 0.36 15 23 H 0.02 0.99 8.00 -2.39 -0.02 0.97 15 24 H 0.14 5.47 8.03 -2.91 -0.02 5.45 15 25 H 0.16 4.77 8.06 -2.91 -0.02 4.75 15 26 H 0.16 1.17 8.14 -2.39 -0.02 1.15 15 27 H 0.08 1.26 8.14 -2.38 -0.02 1.24 15 28 H 0.08 1.29 8.14 -2.39 -0.02 1.27 15 29 H 0.16 1.35 8.14 -2.39 -0.02 1.33 15 Total: -1.00 -70.02 260.99 5.17 -64.85 By element: Atomic # 1 Polarization: -1.73 SS G_CDS: 1.17 Total: -0.57 kcal Atomic # 6 Polarization: -32.97 SS G_CDS: 2.67 Total: -30.30 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: 0.28 Total: -56.43 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -1.73 Total: -18.87 kcal Atomic # 9 Polarization: -6.63 SS G_CDS: 0.75 Total: -5.88 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -70.02 5.17 -64.85 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261100945.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.412 kcal (2) G-P(sol) polarization free energy of solvation -70.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds